Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
22:49:20 (12256): wrapper (7.7.26015): starting
22:49:20 (12256): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 22:49:20] Arguments: --nthreads 4
[2025-10-12 22:49:20] Threads: 4
[2025-10-12 22:49:20] Checking for CVMFS
[2025-10-12 22:49:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 22:49:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 22:49:20] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 22:49:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 22:49:20] 2.11.2.0 2311 43505 67676 151645 3 58 10970541 20275200 1 130560 0 23255578 99.989 1409980 55695 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 22:49:20] CVMFS is ok
[2025-10-12 22:49:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 22:49:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 22:49:20] Further information can be found at the LHC@home message board.
[2025-10-12 22:49:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 22:49:20] Checking for apptainer binary...
[2025-10-12 22:49:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 22:49:20] Running /usr/bin/apptainer --version
[2025-10-12 22:49:20] apptainer version 1.3.2-1.el7
[2025-10-12 22:49:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 22:49:21] c-205-34.aglt2.org
[2025-10-12 22:49:21] apptainer works
[2025-10-12 22:49:21] Set ATHENA_PROC_NUMBER=4
[2025-10-12 22:49:21] Set ATHENA_CORE_NUMBER=4
[2025-10-12 22:49:21] Starting ATLAS job with PandaID=6840851901
[2025-10-12 22:49:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 00:22:56]  *** The last 200 lines of the pilot log: ***
[2025-10-13 00:22:56]  lfn=log.46676269._091080.job.log.tgz.1
[2025-10-13 00:22:56]  mtime=0
[2025-10-13 00:22:56]  protocol_id=None
[2025-10-13 00:22:56]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-13 00:22:56]  replicas=None
[2025-10-13 00:22:56]  scope=mc23_13p6TeV
[2025-10-13 00:22:56]  status=None
[2025-10-13 00:22:56]  status_code=0
[2025-10-13 00:22:56]  storage_token=
[2025-10-13 00:22:56]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6840851901/log.46676269._091080.job.log.tgz.1
[2025-10-13 00:22:56]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3c/3f/log.46676269._091080.job.log.tgz.1
[2025-10-13 00:22:56]  workdir=None
[2025-10-13 00:22:56] ]
[2025-10-13 00:22:56] 2025-10-13 04:22:17,585 | INFO     | transferring file log.46676269._091080.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6840851901/log.46676269._091080.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 00:22:56] 2025-10-13 04:22:17,585 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6840851901/log.46676269._091080.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._091080.job
[2025-10-13 00:22:56] 2025-10-13 04:22:17,595 | INFO     | adding to output.list: log.46676269._091080.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3c/3f/log.46676269._091080.job.log.tg
[2025-10-13 00:22:56] 2025-10-13 04:22:17,596 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 00:22:56] 2025-10-13 04:22:17,596 | INFO     | summary of transferred files:
[2025-10-13 00:22:56] 2025-10-13 04:22:17,596 | INFO     |  -- lfn=log.46676269._091080.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 00:22:56] 2025-10-13 04:22:17,596 | INFO     | stage-out finished correctly
[2025-10-13 00:22:56] 2025-10-13 04:22:18,486 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 00:22:56] 2025-10-13 04:22:19,054 | INFO     | time since job start (5570s) is within the limit (172800.0s)
[2025-10-13 00:22:56] 2025-10-13 04:22:20,796 | INFO     | job 6840851901 has state=finished
[2025-10-13 00:22:56] 2025-10-13 04:22:20,796 | INFO     | preparing for final server update for job 6840851901 in state='finished'
[2025-10-13 00:22:56] 2025-10-13 04:22:20,797 | INFO     | this job has now completed (state=finished)
[2025-10-13 00:22:56] 2025-10-13 04:22:20,797 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 00:22:56] 2025-10-13 04:22:20,797 | INFO     | log transfer has been attempted: DONE
[2025-10-13 00:22:56] 2025-10-13 04:22:20,797 | INFO     | job 6840851901 has finished - writing final server update
[2025-10-13 00:22:56] 2025-10-13 04:22:20,797 | INFO     | total number of processed events: 400 (read)
[2025-10-13 00:22:56] 2025-10-13 04:22:20,798 | INFO     | executing command: lscpu
[2025-10-13 00:22:56] 2025-10-13 04:22:20,810 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 00:22:56] 2025-10-13 04:22:21,056 | INFO     | time since job start (5572s) is within the limit (172800.0s)
[2025-10-13 00:22:56] 2025-10-13 04:22:21,865 | WARNING  | process 22244 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 00:22:56] 2025-10-13 04:22:21,865 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840851901/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 00:22:56] 2025-10-13 04:22:21,895 | INFO     | number of running child processes to parent process 22244: 1
[2025-10-13 00:22:56] 2025-10-13 04:22:21,895 | INFO     | maximum number of monitored processes: 6
[2025-10-13 00:22:56] 2025-10-13 04:22:23,087 | INFO     | time since job start (5574s) is within the limit (172800.0s)
[2025-10-13 00:22:56] 2025-10-13 04:22:23,436 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 00:22:56] 2025-10-13 04:22:23,437 | INFO     | found 4 cores (4 cores per socket, 1 socket) , CPU MHz: 3393.44725
[2025-10-13 00:22:56] 2025-10-13 04:22:23,438 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840851901/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 00:22:56] 2025-10-13 04:22:23,438 | INFO     | extracted standard info from prmon json
[2025-10-13 00:22:56] 2025-10-13 04:22:23,438 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 00:22:56] 2025-10-13 04:22:23,438 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 00:22:56] 2025-10-13 04:22:23,438 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 00:22:56] 2025-10-13 04:22:23,438 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 00:22:56] 2025-10-13 04:22:23,439 | INFO     | fitting pss+swap vs Time
[2025-10-13 00:22:56] 2025-10-13 04:22:23,439 | INFO     | sum of square deviations: 183761585.0
[2025-10-13 00:22:56] 2025-10-13 04:22:23,440 | INFO     | sum of deviations: -11011283697.499998
[2025-10-13 00:22:56] 2025-10-13 04:22:23,440 | INFO     | mean x: 1760326626.5
[2025-10-13 00:22:56] 2025-10-13 04:22:23,440 | INFO     | mean y: 2425991.8928571427
[2025-10-13 00:22:56] 2025-10-13 04:22:23,440 | INFO     | -- intersect: 105483970922.2689
[2025-10-13 00:22:56] 2025-10-13 04:22:23,440 | INFO     | intersect: 105483970922.2689
[2025-10-13 00:22:56] 2025-10-13 04:22:23,440 | INFO     | chi2: 0.09005802160971106
[2025-10-13 00:22:56] 2025-10-13 04:22:23,440 | INFO     | -- intersect: 105483970922.2689
[2025-10-13 00:22:56] 2025-10-13 04:22:23,440 | INFO     | current memory leak: -59.92 B/s (using 84 data points, chi2=0.09)
[2025-10-13 00:22:56] 2025-10-13 04:22:23,440 | INFO     | could have reported an average CPU frequency of 3282 MHz (7 samples)
[2025-10-13 00:22:56] 2025-10-13 04:22:23,440 | INFO     | ..............................
[2025-10-13 00:22:56] 2025-10-13 04:22:23,440 | INFO     | . Timing measurements:
[2025-10-13 00:22:56] 2025-10-13 04:22:23,440 | INFO     | . get job = 0 s
[2025-10-13 00:22:56] 2025-10-13 04:22:23,440 | INFO     | . initial setup = 2 s
[2025-10-13 00:22:56] 2025-10-13 04:22:23,440 | INFO     | . payload setup = 3 s
[2025-10-13 00:22:56] 2025-10-13 04:22:23,441 | INFO     | . stage-in = 0 s
[2025-10-13 00:22:56] 2025-10-13 04:22:23,441 | INFO     | . payload execution = 5546 s
[2025-10-13 00:22:56] 2025-10-13 04:22:23,441 | INFO     | . stage-out = 0 s
[2025-10-13 00:22:56] 2025-10-13 04:22:23,441 | INFO     | . log creation = 0 s
[2025-10-13 00:22:56] 2025-10-13 04:22:23,441 | INFO     | ..............................
[2025-10-13 00:22:56] 2025-10-13 04:22:23,745 | INFO     | 
[2025-10-13 00:22:56] 2025-10-13 04:22:23,745 | INFO     | job summary report
[2025-10-13 00:22:56] 2025-10-13 04:22:23,746 | INFO     | --------------------------------------------------
[2025-10-13 00:22:56] 2025-10-13 04:22:23,746 | INFO     | PanDA job id: 6840851901
[2025-10-13 00:22:56] 2025-10-13 04:22:23,746 | INFO     | task id: 46676269
[2025-10-13 00:22:56] 2025-10-13 04:22:23,746 | INFO     | errors: (none)
[2025-10-13 00:22:56] 2025-10-13 04:22:23,746 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 00:22:56] 2025-10-13 04:22:23,746 | INFO     | pilot state: finished 
[2025-10-13 00:22:56] 2025-10-13 04:22:23,746 | INFO     | transexitcode: 0
[2025-10-13 00:22:56] 2025-10-13 04:22:23,746 | INFO     | exeerrorcode: 0
[2025-10-13 00:22:56] 2025-10-13 04:22:23,746 | INFO     | exeerrordiag: 
[2025-10-13 00:22:56] 2025-10-13 04:22:23,746 | INFO     | exitcode: 0
[2025-10-13 00:22:56] 2025-10-13 04:22:23,746 | INFO     | exitmsg: OK
[2025-10-13 00:22:56] 2025-10-13 04:22:23,746 | INFO     | cpuconsumptiontime: 21271 s
[2025-10-13 00:22:56] 2025-10-13 04:22:23,747 | INFO     | nevents: 400
[2025-10-13 00:22:56] 2025-10-13 04:22:23,747 | INFO     | neventsw: 0
[2025-10-13 00:22:56] 2025-10-13 04:22:23,747 | INFO     | pid: 22244
[2025-10-13 00:22:56] 2025-10-13 04:22:23,747 | INFO     | pgrp: 22244
[2025-10-13 00:22:56] 2025-10-13 04:22:23,747 | INFO     | corecount: 4
[2025-10-13 00:22:56] 2025-10-13 04:22:23,747 | INFO     | event service: False
[2025-10-13 00:22:56] 2025-10-13 04:22:23,747 | INFO     | sizes: {0: 2348855, 3: 2349117, 11: 2349145, 5553: 2375866, 5555: 2384864, 5556: 2384920, 5561: 2385242}
[2025-10-13 00:22:56] 2025-10-13 04:22:23,747 | INFO     | --------------------------------------------------
[2025-10-13 00:22:56] 2025-10-13 04:22:23,747 | INFO     | 
[2025-10-13 00:22:56] 2025-10-13 04:22:23,747 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 00:22:56] 2025-10-13 04:22:23,766 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 00:22:56] 2025-10-13 04:22:23,766 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 00:22:56] 2025-10-13 04:22:23,767 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 00:22:56] 2025-10-13 04:22:23,767 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 00:22:56] 2025-10-13 04:22:23,767 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 00:22:56] 2025-10-13 04:22:23,767 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 00:22:56] 2025-10-13 04:22:23,767 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 00:22:56] 2025-10-13 04:22:23,767 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 00:22:56] 2025-10-13 04:22:23,767 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 00:22:56] 2025-10-13 04:22:23,767 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 00:22:56] 2025-10-13 04:22:23,767 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 00:22:56] 2025-10-13 04:22:23,768 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 00:22:56] 2025-10-13 04:22:23,768 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 00:22:56] 2025-10-13 04:22:23,768 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 00:22:56] 2025-10-13 04:22:23,768 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 00:22:56] 2025-10-13 04:22:23,768 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 00:22:56] 2025-10-13 04:22:23,768 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 00:22:56] 2025-10-13 04:22:23,768 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 00:22:56] 2025-10-13 04:22:23,768 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 00:22:56] 2025-10-13 04:22:23,768 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 00:22:56] 2025-10-13 04:22:23,769 | INFO     | job 6840851901 has completed (purged errors)
[2025-10-13 00:22:56] 2025-10-13 04:22:23,769 | INFO     | overall cleanup function is called
[2025-10-13 00:22:56] 2025-10-13 04:22:24,776 | INFO     | --- collectZombieJob: --- 10, [22244]
[2025-10-13 00:22:56] 2025-10-13 04:22:24,776 | INFO     | zombie collector waiting for pid 22244
[2025-10-13 00:22:56] 2025-10-13 04:22:24,776 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 00:22:56] 2025-10-13 04:22:24,776 | INFO     | collected zombie processes
[2025-10-13 00:22:56] 2025-10-13 04:22:24,776 | INFO     | will attempt to kill all subprocesses of pid=22244
[2025-10-13 00:22:56] 2025-10-13 04:22:24,807 | INFO     | process IDs to be killed: [22244] (in reverse order)
[2025-10-13 00:22:56] 2025-10-13 04:22:24,830 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 00:22:56] 2025-10-13 04:22:24,830 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 00:22:56] 2025-10-13 04:22:24,831 | INFO     | did not find any defunct processes belonging to 22244
[2025-10-13 00:22:56] 2025-10-13 04:22:24,832 | INFO     | did not find any defunct processes belonging to 22244
[2025-10-13 00:22:56] 2025-10-13 04:22:24,832 | INFO     | ready for new job
[2025-10-13 00:22:56] 2025-10-13 04:22:24,832 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 00:22:56] 2025-10-13 04:22:24,833 | INFO     | ***************************************
[2025-10-13 00:22:56] 2025-10-13 04:22:24,833 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 00:22:56] 2025-10-13 04:22:24,833 | INFO     | ***************************************
[2025-10-13 00:22:56] 2025-10-13 04:22:24,833 | INFO     | 
[2025-10-13 00:22:56] 2025-10-13 04:22:24,834 | INFO     | architecture information:
[2025-10-13 00:22:56] 2025-10-13 04:22:24,834 | INFO     | executing command: cat /etc/os-release
[2025-10-13 00:22:56] 2025-10-13 04:22:24,842 | INFO     | cat /etc/os-release:
[2025-10-13 00:22:56] NAME="CentOS Linux"
[2025-10-13 00:22:56] VERSION="7 (Core)"
[2025-10-13 00:22:56] ID="centos"
[2025-10-13 00:22:56] ID_LIKE="rhel fedora"
[2025-10-13 00:22:56] VERSION_ID="7"
[2025-10-13 00:22:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 00:22:56] ANSI_COLOR="0;31"
[2025-10-13 00:22:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 00:22:56] HOME_URL="https://www.centos.org/"
[2025-10-13 00:22:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 00:22:56] 
[2025-10-13 00:22:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 00:22:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 00:22:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 00:22:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 00:22:56] 
[2025-10-13 00:22:56] 2025-10-13 04:22:24,842 | INFO     | ***************************************
[2025-10-13 00:22:56] 2025-10-13 04:22:25,344 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 00:22:56] 2025-10-13 04:22:25,362 | INFO     | sufficient remaining disk space (29355933696 B)
[2025-10-13 00:22:56] 2025-10-13 04:22:25,363 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 00:22:56] 2025-10-13 04:22:25,363 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 00:22:56] 2025-10-13 04:22:25,363 | INFO     | update_server=False
[2025-10-13 00:22:56] 2025-10-13 04:22:25,363 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 00:22:56] 2025-10-13 04:22:25,364 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 00:22:56] 2025-10-13 04:22:25,364 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 00:22:56] 2025-10-13 04:22:25,403 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 00:22:56] 2025-10-13 04:22:25,403 | INFO     | aborting loop
[2025-10-13 00:22:56] 2025-10-13 04:22:25,645 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 00:22:56] 2025-10-13 04:22:25,966 | INFO     | all data control threads have been joined
[2025-10-13 00:22:56] 2025-10-13 04:22:26,369 | INFO     | [job] retrieve thread has finished
[2025-10-13 00:22:56] 2025-10-13 04:22:26,369 | INFO     | [job] queue monitor thread has finished
[2025-10-13 00:22:56] 2025-10-13 04:22:26,408 | INFO     | all payload control threads have been joined
[2025-10-13 00:22:56] 2025-10-13 04:22:26,409 | INFO     | [job] job monitor thread has finished
[2025-10-13 00:22:56] 2025-10-13 04:22:26,414 | INFO     | [job] validate thread has finished
[2025-10-13 00:22:56] 2025-10-13 04:22:26,476 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 00:22:56] 2025-10-13 04:22:26,490 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 00:22:56] 2025-10-13 04:22:26,508 | INFO     | [data] copytool_in thread has finished
[2025-10-13 00:22:56] 2025-10-13 04:22:26,573 | INFO     | all job control threads have been joined
[2025-10-13 00:22:56] 2025-10-13 04:22:26,704 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 00:22:56] 2025-10-13 04:22:26,727 | INFO     | [payload] failed_post thread has finished
[2025-10-13 00:22:56] 2025-10-13 04:22:26,779 | INFO     | [payload] validate_post thread has finished
[2025-10-13 00:22:56] 2025-10-13 04:22:26,969 | INFO     | [data] control thread has finished
[2025-10-13 00:22:56] 2025-10-13 04:22:27,495 | INFO     | [payload] control thread has finished
[2025-10-13 00:22:56] 2025-10-13 04:22:27,578 | INFO     | [job] control thread has finished
[2025-10-13 00:22:56] 2025-10-13 04:22:27,648 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 00:22:56] 2025-10-13 04:22:27,650 | INFO     | [data] copytool_out thread has finished
[2025-10-13 00:22:56] 2025-10-13 04:22:29,370 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 00:22:56] 2025-10-13 04:22:38,201 | INFO     | [monitor] cgroup control has ended
[2025-10-13 00:22:56] 2025-10-13 04:22:39,204 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139978093094720)>', '<ExcThread(monitor, started 139977639831296)>']
[2025-10-13 00:22:56] 2025-10-13 04:22:44,215 | INFO     | all workflow threads have been joined
[2025-10-13 00:22:56] 2025-10-13 04:22:44,215 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 00:22:56] 2025-10-13 04:22:44,215 | INFO     | traces error code: 0
[2025-10-13 00:22:56] 2025-10-13 04:22:44,216 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 00:22:56] 2025-10-13 04:22:56,196 | INFO     | PID=15903 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 00:22:56] 2025-10-13 04:22:56,196 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 00:22:56] 2025-10-13 04:22:56,196 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 00:22:56] 2025-10-13 04:22:56,196 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 00:22:56] 2025-10-13 04:22:56,196 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 00:22:56] 2025-10-13 04:22:56,197 | INFO     | [monitor] control thread has ended
[2025-10-13 00:22:56] 2025-10-13 04:22:56,253 [wrapper] ==== pilot stdout END ====
[2025-10-13 00:22:56] 2025-10-13 04:22:56,255 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 00:22:56] 2025-10-13 04:22:56,257 [wrapper] pilotpid: 15903
[2025-10-13 00:22:56] 2025-10-13 04:22:56,259 [wrapper] Pilot exit status: 0
[2025-10-13 00:22:56] 2025-10-13 04:22:56,265 [wrapper] pandaids: 6840851901
[2025-10-13 00:22:56] 2025-10-13 04:22:56,280 [wrapper] cleanup supervisor_pilot 20694 15904
[2025-10-13 00:22:56] 2025-10-13 04:22:56,282 [wrapper] Test setup, not cleaning
[2025-10-13 00:22:56] 2025-10-13 04:22:56,284 [wrapper] apfmon messages muted
[2025-10-13 00:22:56] 2025-10-13 04:22:56,286 [wrapper] ==== wrapper stdout END ====
[2025-10-13 00:22:56] 2025-10-13 04:22:56,288 [wrapper] ==== wrapper stderr END ====
[2025-10-13 00:22:56]  *** Error codes and diagnostics ***
[2025-10-13 00:22:56]     "exeErrorCode": 0,
[2025-10-13 00:22:56]     "exeErrorDiag": "",
[2025-10-13 00:22:56]     "pilotErrorCode": 0,
[2025-10-13 00:22:56]     "pilotErrorDiag": "",
[2025-10-13 00:22:56]  *** Listing of results directory ***
[2025-10-13 00:22:56] total 419464
[2025-10-13 00:22:56] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 17:57 pilot3.tar.gz
[2025-10-13 00:22:56] -rwx------ 1 boincer umatlas     36292 Oct 12 18:28 runpilot2-wrapper.sh
[2025-10-13 00:22:56] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 18:28 queuedata.json
[2025-10-13 00:22:56] -rw-r--r-- 1 boincer umatlas       100 Oct 12 22:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 00:22:56] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 22:49 run_atlas
[2025-10-13 00:22:56] -rw-r--r-- 1 boincer umatlas       105 Oct 12 22:49 job.xml
[2025-10-13 00:22:56] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 22:49 start_atlas.sh
[2025-10-13 00:22:56] drwxrwx--x 2 boincer umatlas      4096 Oct 12 22:49 shared
[2025-10-13 00:22:56] -rw-r--r-- 2 boincer umatlas    569680 Oct 12 22:49 input.tar.gz
[2025-10-13 00:22:56] -rw-r--r-- 2 boincer umatlas 223345333 Oct 12 22:49 EVNT.46676267._004615.pool.root.1
[2025-10-13 00:22:56] -rw-r--r-- 1 boincer umatlas         0 Oct 12 22:49 boinc_lockfile
[2025-10-13 00:22:56] -rw-r--r-- 1 boincer umatlas      2549 Oct 12 22:49 pandaJob.out
[2025-10-13 00:22:56] -rw------- 1 boincer umatlas    974373 Oct 12 22:49 agis_schedconf.cvmfs.json
[2025-10-13 00:22:56] -rw------- 1 boincer umatlas   1560580 Oct 12 22:49 agis_ddmendpoints.agis.ALL.json
[2025-10-13 00:22:56] drwx------ 5 boincer umatlas      4096 Oct 12 22:49 pilot3
[2025-10-13 00:22:56] -rw-r--r-- 1 boincer umatlas      6238 Oct 13 00:19 init_data.xml
[2025-10-13 00:22:56] -rw------- 1 boincer umatlas 200142974 Oct 13 00:21 HITS.46676269._091080.pool.root.1
[2025-10-13 00:22:56] -rw-r--r-- 1 boincer umatlas       529 Oct 13 00:21 boinc_task_state.xml
[2025-10-13 00:22:56] -rw------- 1 boincer umatlas      1055 Oct 13 00:22 memory_monitor_summary.json
[2025-10-13 00:22:56] -rw------- 1 boincer umatlas        95 Oct 13 00:22 pilot_heartbeat.json
[2025-10-13 00:22:56] -rw------- 1 boincer umatlas    266559 Oct 13 00:22 log.46676269._091080.job.log.tgz.1
[2025-10-13 00:22:56] -rw------- 1 boincer umatlas      7827 Oct 13 00:22 heartbeat.json
[2025-10-13 00:22:56] -rw-r--r-- 1 boincer umatlas        27 Oct 13 00:22 wrapper_checkpoint.txt
[2025-10-13 00:22:56] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 00:22 boinc_mmap_file
[2025-10-13 00:22:56] -rw------- 1 boincer umatlas       745 Oct 13 00:22 pilotlog.txt
[2025-10-13 00:22:56] -rw------- 1 boincer umatlas    805923 Oct 13 00:22 log.46676269._091080.job.log.1
[2025-10-13 00:22:56] -rw------- 1 boincer umatlas       357 Oct 13 00:22 output.list
[2025-10-13 00:22:56] -rw-r--r-- 1 boincer umatlas       620 Oct 13 00:22 runtime_log
[2025-10-13 00:22:56] -rw------- 1 boincer umatlas   1095680 Oct 13 00:22 result.tar.gz
[2025-10-13 00:22:56] -rw-r--r-- 1 boincer umatlas      8703 Oct 13 00:22 runtime_log.err
[2025-10-13 00:22:56] -rw------- 1 boincer umatlas       656 Oct 13 00:22 7G0KDmhjJS8n9Rq4apOajLDm4fhM0noT9bVof3QYDm2AVMDmxLJF6n.diag
[2025-10-13 00:22:56] -rw-r--r-- 1 boincer umatlas     21617 Oct 13 00:22 stderr.txt
[2025-10-13 00:22:56] HITS file was successfully produced:
[2025-10-13 00:22:56] -rw------- 1 boincer umatlas 200142974 Oct 13 00:21 shared/HITS.pool.root.1
[2025-10-13 00:22:56]  *** Contents of shared directory: ***
[2025-10-13 00:22:56] total 415216
[2025-10-13 00:22:56] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 22:49 start_atlas.sh
[2025-10-13 00:22:56] -rw-r--r-- 2 boincer umatlas    569680 Oct 12 22:49 input.tar.gz
[2025-10-13 00:22:56] -rw-r--r-- 2 boincer umatlas 223345333 Oct 12 22:49 ATLAS.root_0
[2025-10-13 00:22:56] -rw------- 1 boincer umatlas 200142974 Oct 13 00:21 HITS.pool.root.1
[2025-10-13 00:22:56] -rw------- 1 boincer umatlas   1095680 Oct 13 00:22 result.tar.gz
00:22:58 (12256): run_atlas exited; CPU time 21284.922517
00:22:58 (12256): called boinc_finish(0)

</stderr_txt>
]]>

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