Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
22:41:57 (12341): wrapper (7.7.26015): starting
22:41:57 (12341): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 22:41:57] Arguments: --nthreads 8
[2025-10-12 22:41:57] Threads: 8
[2025-10-12 22:41:57] Checking for CVMFS
[2025-10-12 22:41:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 22:41:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 22:41:57] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 22:41:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 22:41:57] 2.11.2.0 4362 114283 141668 151645 1 59 18332238 18432000 1833 130560 1 112228771 99.989 4995839 22313 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 22:41:57] CVMFS is ok
[2025-10-12 22:41:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 22:41:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 22:41:57] Further information can be found at the LHC@home message board.
[2025-10-12 22:41:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 22:41:57] Checking for apptainer binary...
[2025-10-12 22:41:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 22:41:57] Running /usr/bin/apptainer --version
[2025-10-12 22:41:57] apptainer version 1.3.2-1.el7
[2025-10-12 22:41:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 22:41:58] c-206-29.aglt2.org
[2025-10-12 22:41:58] apptainer works
[2025-10-12 22:41:58] Set ATHENA_PROC_NUMBER=8
[2025-10-12 22:41:58] Set ATHENA_CORE_NUMBER=8
[2025-10-12 22:41:58] Starting ATLAS job with PandaID=6840748843
[2025-10-12 22:41:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 01:42:39]  *** The last 200 lines of the pilot log: ***
[2025-10-13 01:42:39] 2025-10-13 05:42:07,075 | INFO     | intersect: 10555659069.853205
[2025-10-13 01:42:39] 2025-10-13 05:42:07,075 | INFO     | chi2: 2.394452170831364
[2025-10-13 01:42:39] 2025-10-13 05:42:07,075 | INFO     | sum of square deviations: 1577789583.0
[2025-10-13 01:42:39] 2025-10-13 05:42:07,076 | INFO     | sum of deviations: 1702586646.4999952
[2025-10-13 01:42:39] 2025-10-13 05:42:07,076 | INFO     | mean x: 1760328570.5
[2025-10-13 01:42:39] 2025-10-13 05:42:07,077 | INFO     | mean y: 2504024.2034883723
[2025-10-13 01:42:39] 2025-10-13 05:42:07,077 | INFO     | -- intersect: -1897059738.8472438
[2025-10-13 01:42:39] 2025-10-13 05:42:07,077 | INFO     | intersect: -1897059738.8472438
[2025-10-13 01:42:39] 2025-10-13 05:42:07,077 | INFO     | chi2: 1.6128445171788763
[2025-10-13 01:42:39] 2025-10-13 05:42:07,077 | INFO     | current chi2=1.6128445171788763 (change=32.6424416897461 %)
[2025-10-13 01:42:39] 2025-10-13 05:42:07,078 | INFO     | sum of square deviations: 1444149868.0
[2025-10-13 01:42:39] 2025-10-13 05:42:07,079 | INFO     | sum of deviations: 1711774070.0000021
[2025-10-13 01:42:39] 2025-10-13 05:42:07,079 | INFO     | mean x: 1760328418.0
[2025-10-13 01:42:39] 2025-10-13 05:42:07,079 | INFO     | mean y: 2504034.706586826
[2025-10-13 01:42:39] 2025-10-13 05:42:07,079 | INFO     | -- intersect: -2084041556.8459134
[2025-10-13 01:42:39] 2025-10-13 05:42:07,079 | INFO     | intersect: -2084041556.8459134
[2025-10-13 01:42:39] 2025-10-13 05:42:07,080 | INFO     | chi2: 1.6132501462257363
[2025-10-13 01:42:39] 2025-10-13 05:42:07,080 | INFO     | current chi2=1.6132501462257363 (change=-0.02514991634590007 %)
[2025-10-13 01:42:39] 2025-10-13 05:42:07,080 | INFO     | right removable region: 166
[2025-10-13 01:42:39] 2025-10-13 05:42:07,080 | INFO     | sum of square deviations: 1577789583.0
[2025-10-13 01:42:39] 2025-10-13 05:42:07,081 | INFO     | sum of deviations: -36546203124.0
[2025-10-13 01:42:39] 2025-10-13 05:42:07,081 | INFO     | mean x: 1760328875.5
[2025-10-13 01:42:39] 2025-10-13 05:42:07,081 | INFO     | mean y: 2519260.3720930233
[2025-10-13 01:42:39] 2025-10-13 05:42:07,082 | INFO     | -- intersect: 40776864168.102104
[2025-10-13 01:42:39] 2025-10-13 05:42:07,082 | INFO     | size of work directory /tmp/boinchome/slots/1/PanDA_Pilot-6840748843: 3318381 B (within 2537553920 B limit)
[2025-10-13 01:42:39] 2025-10-13 05:42:07,082 | INFO     | intersect: 40776864168.102104
[2025-10-13 01:42:39] 2025-10-13 05:42:07,082 | INFO     | chi2: 0.9636285698437049
[2025-10-13 01:42:39] 2025-10-13 05:42:07,082 | INFO     | pfn file=/tmp/boinchome/slots/1/PanDA_Pilot-6840748843/HITS.46676269._088409.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-13 01:42:39] 2025-10-13 05:42:07,083 | INFO     | current chi2=0.9636285698437049 (change=59.75578123537423 %)
[2025-10-13 01:42:39] 2025-10-13 05:42:07,083 | INFO     | total size of present files: 0 B (workdir size: 3318381 B)
[2025-10-13 01:42:39] 2025-10-13 05:42:07,083 | INFO     | sum of square deviations: 1444149868.0
[2025-10-13 01:42:39] 2025-10-13 05:42:07,085 | INFO     | sum of deviations: -35070296290.0
[2025-10-13 01:42:39] 2025-10-13 05:42:07,085 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/1/PanDA_Pilot-6840748843/HITS.46676269._088409.pool.root.1 since it does not exist
[2025-10-13 01:42:39] 2025-10-13 05:42:07,085 | INFO     | mean x: 1760329028.0
[2025-10-13 01:42:39] 2025-10-13 05:42:07,086 | INFO     | mean y: 2517514.2035928145
[2025-10-13 01:42:39] 2025-10-13 05:42:07,086 | INFO     | -- intersect: 42751031326.931854
[2025-10-13 01:42:39] 2025-10-13 05:42:07,086 | INFO     | intersect: 42751031326.931854
[2025-10-13 01:42:39] 2025-10-13 05:42:07,086 | INFO     | chi2: 0.9486597403615236
[2025-10-13 01:42:39] 2025-10-13 05:42:07,087 | INFO     | current chi2=0.9486597403615236 (change=1.5533816607999933 %)
[2025-10-13 01:42:39] 2025-10-13 05:42:07,087 | INFO     | left removable region: 20
[2025-10-13 01:42:39] 2025-10-13 05:42:07,087 | INFO     | sum of square deviations: 964976232.5
[2025-10-13 01:42:39] 2025-10-13 05:42:07,088 | INFO     | sum of deviations: -12589541882.5
[2025-10-13 01:42:39] 2025-10-13 05:42:07,089 | INFO     | mean x: 1760328997.5
[2025-10-13 01:42:39] 2025-10-13 05:42:07,089 | INFO     | mean y: 2518916.6506849313
[2025-10-13 01:42:39] 2025-10-13 05:42:07,089 | INFO     | -- intersect: 22968613722.51989
[2025-10-13 01:42:39] 2025-10-13 05:42:07,089 | INFO     | intersect: 22968613722.51989
[2025-10-13 01:42:39] 2025-10-13 05:42:07,090 | INFO     | chi2: 0.10778603536627623
[2025-10-13 01:42:39] 2025-10-13 05:42:07,090 | INFO     | -- intersect: 22968613722.51989
[2025-10-13 01:42:39] 2025-10-13 05:42:07,090 | INFO     | current memory leak: -13.05 B/s (using 146 data points, chi2=0.11)
[2025-10-13 01:42:39] 2025-10-13 05:42:07,091 | INFO     | could have reported an average CPU frequency of 2566 MHz (9 samples)
[2025-10-13 01:42:39] 2025-10-13 05:42:07,091 | INFO     | ..............................
[2025-10-13 01:42:39] 2025-10-13 05:42:07,092 | INFO     | . Timing measurements:
[2025-10-13 01:42:39] 2025-10-13 05:42:07,092 | INFO     | . get job = 0 s
[2025-10-13 01:42:39] 2025-10-13 05:42:07,092 | INFO     | . initial setup = 2 s
[2025-10-13 01:42:39] 2025-10-13 05:42:07,092 | INFO     | . payload setup = 5 s
[2025-10-13 01:42:39] 2025-10-13 05:42:07,093 | INFO     | . stage-in = 0 s
[2025-10-13 01:42:39] 2025-10-13 05:42:07,093 | INFO     | . payload execution = 10764 s
[2025-10-13 01:42:39] 2025-10-13 05:42:07,093 | INFO     | . stage-out = 1 s
[2025-10-13 01:42:39] 2025-10-13 05:42:07,093 | INFO     | . log creation = 0 s
[2025-10-13 01:42:39] 2025-10-13 05:42:07,094 | INFO     | ..............................
[2025-10-13 01:42:39] 2025-10-13 05:42:07,309 | INFO     | 
[2025-10-13 01:42:39] 2025-10-13 05:42:07,310 | INFO     | job summary report
[2025-10-13 01:42:39] 2025-10-13 05:42:07,310 | INFO     | number of running child processes to parent process 22562: 1
[2025-10-13 01:42:39] 2025-10-13 05:42:07,311 | INFO     | --------------------------------------------------
[2025-10-13 01:42:39] 2025-10-13 05:42:07,311 | INFO     | maximum number of monitored processes: 6
[2025-10-13 01:42:39] 2025-10-13 05:42:07,311 | INFO     | PanDA job id: 6840748843
[2025-10-13 01:42:39] 2025-10-13 05:42:07,311 | INFO     | aborting job monitoring since job object (job id=6840748843) has expired
[2025-10-13 01:42:39] 2025-10-13 05:42:07,311 | INFO     | task id: 46676269
[2025-10-13 01:42:39] 2025-10-13 05:42:07,312 | INFO     | errors: (none)
[2025-10-13 01:42:39] 2025-10-13 05:42:07,312 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 01:42:39] 2025-10-13 05:42:07,312 | INFO     | pilot state: finished 
[2025-10-13 01:42:39] 2025-10-13 05:42:07,312 | INFO     | transexitcode: 0
[2025-10-13 01:42:39] 2025-10-13 05:42:07,313 | INFO     | exeerrorcode: 0
[2025-10-13 01:42:39] 2025-10-13 05:42:07,313 | INFO     | exeerrordiag: 
[2025-10-13 01:42:39] 2025-10-13 05:42:07,313 | INFO     | exitcode: 0
[2025-10-13 01:42:39] 2025-10-13 05:42:07,313 | INFO     | exitmsg: OK
[2025-10-13 01:42:39] 2025-10-13 05:42:07,313 | INFO     | cpuconsumptiontime: 81291 s
[2025-10-13 01:42:39] 2025-10-13 05:42:07,313 | INFO     | nevents: 400
[2025-10-13 01:42:39] 2025-10-13 05:42:07,313 | INFO     | neventsw: 0
[2025-10-13 01:42:39] 2025-10-13 05:42:07,314 | INFO     | pid: 22562
[2025-10-13 01:42:39] 2025-10-13 05:42:07,314 | INFO     | pgrp: 22562
[2025-10-13 01:42:39] 2025-10-13 05:42:07,314 | INFO     | corecount: 8
[2025-10-13 01:42:39] 2025-10-13 05:42:07,314 | INFO     | event service: False
[2025-10-13 01:42:39] 2025-10-13 05:42:07,314 | INFO     | sizes: {0: 2348636, 1: 2348835, 4: 2349097, 12: 2349125, 10772: 2378084, 10773: 2378083, 10775: 2387265, 10777: 2387321, 10781: 2387607}
[2025-10-13 01:42:39] 2025-10-13 05:42:07,314 | INFO     | --------------------------------------------------
[2025-10-13 01:42:39] 2025-10-13 05:42:07,315 | INFO     | 
[2025-10-13 01:42:39] 2025-10-13 05:42:07,315 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-13 01:42:39] 2025-10-13 05:42:07,345 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 01:42:39] 2025-10-13 05:42:07,345 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 01:42:39] 2025-10-13 05:42:07,345 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 01:42:39] 2025-10-13 05:42:07,345 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 01:42:39] 2025-10-13 05:42:07,346 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 01:42:39] 2025-10-13 05:42:07,346 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 01:42:39] 2025-10-13 05:42:07,346 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 01:42:39] 2025-10-13 05:42:07,346 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 01:42:39] 2025-10-13 05:42:07,346 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 01:42:39] 2025-10-13 05:42:07,347 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 01:42:39] 2025-10-13 05:42:07,347 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 01:42:39] 2025-10-13 05:42:07,347 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 01:42:39] 2025-10-13 05:42:07,347 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 01:42:39] 2025-10-13 05:42:07,347 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 01:42:39] 2025-10-13 05:42:07,347 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 01:42:39] 2025-10-13 05:42:07,348 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 01:42:39] 2025-10-13 05:42:07,348 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 01:42:39] 2025-10-13 05:42:07,348 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 01:42:39] 2025-10-13 05:42:07,348 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 01:42:39] 2025-10-13 05:42:07,348 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 01:42:39] 2025-10-13 05:42:07,349 | INFO     | job 6840748843 has completed (purged errors)
[2025-10-13 01:42:39] 2025-10-13 05:42:07,349 | INFO     | overall cleanup function is called
[2025-10-13 01:42:39] 2025-10-13 05:42:07,522 [wrapper] supervise_pilot (15 min periods counter: 13)
[2025-10-13 01:42:39] 2025-10-13 05:42:08,357 | INFO     | --- collectZombieJob: --- 10, [22562]
[2025-10-13 01:42:39] 2025-10-13 05:42:08,357 | INFO     | zombie collector waiting for pid 22562
[2025-10-13 01:42:39] 2025-10-13 05:42:08,357 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 01:42:39] 2025-10-13 05:42:08,358 | INFO     | collected zombie processes
[2025-10-13 01:42:39] 2025-10-13 05:42:08,358 | INFO     | will attempt to kill all subprocesses of pid=22562
[2025-10-13 01:42:39] 2025-10-13 05:42:08,491 | INFO     | process IDs to be killed: [22562] (in reverse order)
[2025-10-13 01:42:39] 2025-10-13 05:42:08,564 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 01:42:39] 2025-10-13 05:42:08,564 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 01:42:39] 2025-10-13 05:42:08,567 | INFO     | did not find any defunct processes belonging to 22562
[2025-10-13 01:42:39] 2025-10-13 05:42:08,569 | INFO     | did not find any defunct processes belonging to 22562
[2025-10-13 01:42:39] 2025-10-13 05:42:08,570 | INFO     | ready for new job
[2025-10-13 01:42:39] 2025-10-13 05:42:08,570 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 01:42:39] 2025-10-13 05:42:08,571 | INFO     | ***************************************
[2025-10-13 01:42:39] 2025-10-13 05:42:08,571 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 01:42:39] 2025-10-13 05:42:08,571 | INFO     | ***************************************
[2025-10-13 01:42:39] 2025-10-13 05:42:08,571 | INFO     | 
[2025-10-13 01:42:39] 2025-10-13 05:42:08,572 | INFO     | architecture information:
[2025-10-13 01:42:39] 2025-10-13 05:42:08,573 | INFO     | executing command: cat /etc/os-release
[2025-10-13 01:42:39] 2025-10-13 05:42:08,584 | INFO     | cat /etc/os-release:
[2025-10-13 01:42:39] NAME="CentOS Linux"
[2025-10-13 01:42:39] VERSION="7 (Core)"
[2025-10-13 01:42:39] ID="centos"
[2025-10-13 01:42:39] ID_LIKE="rhel fedora"
[2025-10-13 01:42:39] VERSION_ID="7"
[2025-10-13 01:42:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 01:42:39] ANSI_COLOR="0;31"
[2025-10-13 01:42:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 01:42:39] HOME_URL="https://www.centos.org/"
[2025-10-13 01:42:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 01:42:39] 
[2025-10-13 01:42:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 01:42:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 01:42:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 01:42:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 01:42:39] 
[2025-10-13 01:42:39] 2025-10-13 05:42:08,584 | INFO     | ***************************************
[2025-10-13 01:42:39] 2025-10-13 05:42:09,087 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-13 01:42:39] 2025-10-13 05:42:09,108 | INFO     | sufficient remaining disk space (28121759744 B)
[2025-10-13 01:42:39] 2025-10-13 05:42:09,108 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 01:42:39] 2025-10-13 05:42:09,108 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 01:42:39] 2025-10-13 05:42:09,109 | INFO     | update_server=False
[2025-10-13 01:42:39] 2025-10-13 05:42:09,109 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 01:42:39] 2025-10-13 05:42:09,109 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:42:39] 2025-10-13 05:42:09,109 | INFO     | aborting loop
[2025-10-13 01:42:39] 2025-10-13 05:42:09,109 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:42:39] 2025-10-13 05:42:09,110 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 01:42:39] 2025-10-13 05:42:09,203 | INFO     | all data control threads have been joined
[2025-10-13 01:42:39] 2025-10-13 05:42:09,325 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 01:42:39] 2025-10-13 05:42:09,345 | INFO     | all job control threads have been joined
[2025-10-13 01:42:39] 2025-10-13 05:42:10,114 | INFO     | [job] job monitor thread has finished
[2025-10-13 01:42:39] 2025-10-13 05:42:10,114 | INFO     | [job] retrieve thread has finished
[2025-10-13 01:42:39] 2025-10-13 05:42:10,115 | INFO     | [job] queue monitor thread has finished
[2025-10-13 01:42:39] 2025-10-13 05:42:10,209 | INFO     | [data] control thread has finished
[2025-10-13 01:42:39] 2025-10-13 05:42:10,287 | INFO     | [data] copytool_in thread has finished
[2025-10-13 01:42:39] 2025-10-13 05:42:10,326 | INFO     | all payload control threads have been joined
[2025-10-13 01:42:39] 2025-10-13 05:42:10,351 | INFO     | [job] control thread has finished
[2025-10-13 01:42:39] 2025-10-13 05:42:10,353 | INFO     | [payload] failed_post thread has finished
[2025-10-13 01:42:39] 2025-10-13 05:42:10,470 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 01:42:39] 2025-10-13 05:42:10,549 | INFO     | [job] validate thread has finished
[2025-10-13 01:42:39] 2025-10-13 05:42:11,051 | INFO     | [payload] validate_post thread has finished
[2025-10-13 01:42:39] 2025-10-13 05:42:11,063 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 01:42:39] 2025-10-13 05:42:11,113 | INFO     | [data] copytool_out thread has finished
[2025-10-13 01:42:39] 2025-10-13 05:42:11,187 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 01:42:39] 2025-10-13 05:42:11,332 | INFO     | [payload] control thread has finished
[2025-10-13 01:42:39] 2025-10-13 05:42:13,330 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 01:42:39] 2025-10-13 05:42:19,379 | INFO     | job.realtimelogging is not enabled
[2025-10-13 01:42:39] 2025-10-13 05:42:20,383 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 01:42:39] 2025-10-13 05:42:26,991 | INFO     | [monitor] cgroup control has ended
[2025-10-13 01:42:39] 2025-10-13 05:42:27,080 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139799795509056)>', '<ExcThread(monitor, started 139799214147328)>']
[2025-10-13 01:42:39] 2025-10-13 05:42:32,104 | INFO     | all workflow threads have been joined
[2025-10-13 01:42:39] 2025-10-13 05:42:32,105 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 01:42:39] 2025-10-13 05:42:32,105 | INFO     | traces error code: 0
[2025-10-13 01:42:39] 2025-10-13 05:42:32,105 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 01:42:39] 2025-10-13 05:42:39,048 | INFO     | PID=16076 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 01:42:39] 2025-10-13 05:42:39,049 | INFO     | .. there are 3 such processes running
[2025-10-13 01:42:39] 2025-10-13 05:42:39,049 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 01:42:39] 2025-10-13 05:42:39,049 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 01:42:39] 2025-10-13 05:42:39,049 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 01:42:39] 2025-10-13 05:42:39,050 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 01:42:39] 2025-10-13 05:42:39,050 | INFO     | [monitor] control thread has ended
[2025-10-13 01:42:39] 2025-10-13 05:42:39,182 [wrapper] ==== pilot stdout END ====
[2025-10-13 01:42:39] 2025-10-13 05:42:39,185 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 01:42:39] 2025-10-13 05:42:39,187 [wrapper] pilotpid: 16076
[2025-10-13 01:42:39] 2025-10-13 05:42:39,190 [wrapper] Pilot exit status: 0
[2025-10-13 01:42:39] 2025-10-13 05:42:39,202 [wrapper] pandaids: 6840748843
[2025-10-13 01:42:39] 2025-10-13 05:42:39,242 [wrapper] cleanup supervisor_pilot  3561 16077
[2025-10-13 01:42:39] 2025-10-13 05:42:39,245 [wrapper] Test setup, not cleaning
[2025-10-13 01:42:39] 2025-10-13 05:42:39,248 [wrapper] apfmon messages muted
[2025-10-13 01:42:39] 2025-10-13 05:42:39,250 [wrapper] ==== wrapper stdout END ====
[2025-10-13 01:42:39] 2025-10-13 05:42:39,253 [wrapper] ==== wrapper stderr END ====
[2025-10-13 01:42:39]  *** Error codes and diagnostics ***
[2025-10-13 01:42:39]     "exeErrorCode": 0,
[2025-10-13 01:42:39]     "exeErrorDiag": "",
[2025-10-13 01:42:39]     "pilotErrorCode": 0,
[2025-10-13 01:42:39]     "pilotErrorDiag": "",
[2025-10-13 01:42:39]  *** Listing of results directory ***
[2025-10-13 01:42:39] total 412900
[2025-10-13 01:42:39] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 16:08 pilot3.tar.gz
[2025-10-13 01:42:39] -rwx------ 1 boincer umatlas     36292 Oct 12 16:15 runpilot2-wrapper.sh
[2025-10-13 01:42:39] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 16:15 queuedata.json
[2025-10-13 01:42:39] -rw-r--r-- 1 boincer umatlas       100 Oct 12 22:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 01:42:39] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 22:41 run_atlas
[2025-10-13 01:42:39] -rw-r--r-- 1 boincer umatlas       105 Oct 12 22:41 job.xml
[2025-10-13 01:42:39] -rw-r--r-- 2 boincer umatlas 220915370 Oct 12 22:41 EVNT.46676267._002298.pool.root.1
[2025-10-13 01:42:39] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 22:41 start_atlas.sh
[2025-10-13 01:42:39] drwxrwx--x 2 boincer umatlas      4096 Oct 12 22:41 shared
[2025-10-13 01:42:39] -rw-r--r-- 2 boincer umatlas    569684 Oct 12 22:41 input.tar.gz
[2025-10-13 01:42:39] -rw-r--r-- 1 boincer umatlas         0 Oct 12 22:41 boinc_lockfile
[2025-10-13 01:42:39] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 22:41 pandaJob.out
[2025-10-13 01:42:39] -rw------- 1 boincer umatlas    974373 Oct 12 22:42 agis_schedconf.cvmfs.json
[2025-10-13 01:42:39] -rw------- 1 boincer umatlas   1560580 Oct 12 22:42 agis_ddmendpoints.agis.ALL.json
[2025-10-13 01:42:39] drwx------ 5 boincer umatlas      4096 Oct 12 22:42 pilot3
[2025-10-13 01:42:39] -rw-r--r-- 1 boincer umatlas      5951 Oct 13 01:40 init_data.xml
[2025-10-13 01:42:39] -rw------- 1 boincer umatlas 194165215 Oct 13 01:41 HITS.46676269._088409.pool.root.1
[2025-10-13 01:42:39] -rw------- 1 boincer umatlas        95 Oct 13 01:41 pilot_heartbeat.json
[2025-10-13 01:42:39] -rw-r--r-- 1 boincer umatlas       530 Oct 13 01:41 boinc_task_state.xml
[2025-10-13 01:42:39] -rw------- 1 boincer umatlas      1054 Oct 13 01:41 memory_monitor_summary.json
[2025-10-13 01:42:39] -rw------- 1 boincer umatlas    403556 Oct 13 01:42 log.46676269._088409.job.log.tgz.1
[2025-10-13 01:42:39] -rw------- 1 boincer umatlas      7860 Oct 13 01:42 heartbeat.json
[2025-10-13 01:42:39] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 01:42 boinc_mmap_file
[2025-10-13 01:42:39] -rw-r--r-- 1 boincer umatlas        28 Oct 13 01:42 wrapper_checkpoint.txt
[2025-10-13 01:42:39] -rw------- 1 boincer umatlas       820 Oct 13 01:42 pilotlog.txt
[2025-10-13 01:42:39] -rw------- 1 boincer umatlas   1513832 Oct 13 01:42 log.46676269._088409.job.log.1
[2025-10-13 01:42:39] -rw------- 1 boincer umatlas       357 Oct 13 01:42 output.list
[2025-10-13 01:42:39] -rw-r--r-- 1 boincer umatlas       620 Oct 13 01:42 runtime_log
[2025-10-13 01:42:39] -rw------- 1 boincer umatlas   1935360 Oct 13 01:42 result.tar.gz
[2025-10-13 01:42:39] -rw------- 1 boincer umatlas       662 Oct 13 01:42 RZwKDmweHS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmWPlNDmyYBytn.diag
[2025-10-13 01:42:39] -rw-r--r-- 1 boincer umatlas      8704 Oct 13 01:42 runtime_log.err
[2025-10-13 01:42:39] -rw-r--r-- 1 boincer umatlas     21298 Oct 13 01:42 stderr.txt
[2025-10-13 01:42:39] HITS file was successfully produced:
[2025-10-13 01:42:39] -rw------- 1 boincer umatlas 194165215 Oct 13 01:41 shared/HITS.pool.root.1
[2025-10-13 01:42:39]  *** Contents of shared directory: ***
[2025-10-13 01:42:39] total 407828
[2025-10-13 01:42:39] -rw-r--r-- 2 boincer umatlas 220915370 Oct 12 22:41 ATLAS.root_0
[2025-10-13 01:42:39] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 22:41 start_atlas.sh
[2025-10-13 01:42:39] -rw-r--r-- 2 boincer umatlas    569684 Oct 12 22:41 input.tar.gz
[2025-10-13 01:42:39] -rw------- 1 boincer umatlas 194165215 Oct 13 01:41 HITS.pool.root.1
[2025-10-13 01:42:39] -rw------- 1 boincer umatlas   1935360 Oct 13 01:42 result.tar.gz
01:42:41 (12341): run_atlas exited; CPU time 81415.788126
01:42:41 (12341): called boinc_finish(0)

</stderr_txt>
]]>

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