Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:51:15 (1545555): wrapper (7.7.26015): starting
19:51:15 (1545555): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 19:51:15] Arguments: --nthreads 12
[2025-10-12 19:51:15] Threads: 12
[2025-10-12 19:51:15] Checking for CVMFS
[2025-10-12 19:51:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 19:51:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 19:51:16] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 19:51:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 19:51:16] 2.11.3.0 2494 24811 306896 151645 1 195 34813818 45568000 15708 130560 0 344316919 99.890 118469039 24654 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-10-12 19:51:16] CVMFS is ok
[2025-10-12 19:51:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 19:51:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 19:51:16] Further information can be found at the LHC@home message board.
[2025-10-12 19:51:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 19:51:16] Checking for apptainer binary...
[2025-10-12 19:51:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 19:51:16] Running /usr/bin/apptainer --version
[2025-10-12 19:51:16] apptainer version 1.4.1-1.el9
[2025-10-12 19:51:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 19:51:16] wns0171.triumf.lcg
[2025-10-12 19:51:16] apptainer works
[2025-10-12 19:51:16] Set ATHENA_PROC_NUMBER=12
[2025-10-12 19:51:16] Set ATHENA_CORE_NUMBER=12
[2025-10-12 19:51:17] Starting ATLAS job with PandaID=6841069030
[2025-10-12 19:51:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 19:55:58]  *** The last 200 lines of the pilot log: ***
[2025-10-12 19:55:58] 2025-10-13 02:55:24,415 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 19:55:58] 2025-10-13 02:55:24,415 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 19:55:58] 2025-10-13 02:55:24,416 | WARNING  | wrong length of table data, x=[1760323964.0], y=[1637.0] (must be same and length>=4)
[2025-10-12 19:55:58] 2025-10-13 02:55:24,416 | INFO     | could have reported an average CPU frequency of 2743 MHz (4 samples)
[2025-10-12 19:55:58] 2025-10-13 02:55:24,433 | INFO     | time since job start (219s) is within the limit (172800.0s)
[2025-10-12 19:55:58] 2025-10-13 02:55:24,433 | INFO     | ..............................
[2025-10-12 19:55:58] 2025-10-13 02:55:24,434 | INFO     | . Timing measurements:
[2025-10-12 19:55:58] 2025-10-13 02:55:24,434 | INFO     | . get job = 0 s
[2025-10-12 19:55:58] 2025-10-13 02:55:24,434 | INFO     | . initial setup = 3 s
[2025-10-12 19:55:58] 2025-10-13 02:55:24,434 | INFO     | . payload setup = 13 s
[2025-10-12 19:55:58] 2025-10-13 02:55:24,434 | INFO     | . stage-in = 0 s
[2025-10-12 19:55:58] 2025-10-13 02:55:24,434 | INFO     | . payload execution = 39 s
[2025-10-12 19:55:58] 2025-10-13 02:55:24,434 | INFO     | . stage-out = 0 s
[2025-10-12 19:55:58] 2025-10-13 02:55:24,434 | INFO     | . log creation = 0 s
[2025-10-12 19:55:58] 2025-10-13 02:55:24,434 | INFO     | ..............................
[2025-10-12 19:55:58] 2025-10-13 02:55:24,434 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 19:55:58] 2025-10-13 02:55:24,434 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6841069030/pilotlog.txt
[2025-10-12 19:55:58] 2025-10-13 02:55:24,446 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-12 19:55:58] - Log from pilotlog.txt -
[2025-10-12 19:55:58] 2025-10-13 02:55:24,415 | INFO     | extracted standard info from prmon json
[2025-10-12 19:55:58] 2025-10-13 02:55:24,415 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 19:55:58] 2025-10-13 02:55:24,415 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 19:55:58] 2025-10-13 02:55:24,415 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 19:55:58] 2025-10-13 02:55:24,415 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 19:55:58] 2025-10-13 02:55:24,416 | WARNING  | wrong length of table data, x=[1760323964.0], y=[1637.0] (must be same and length>=4)
[2025-10-12 19:55:58] 2025-10-13 02:55:24,416 | INFO     | could have reported an average CPU frequency of 2743 MHz (4 samples)
[2025-10-12 19:55:58] 2025-10-13 02:55:24,433 | INFO     | time since job start (219s) is within the limit (172800.0s)
[2025-10-12 19:55:58] 2025-10-13 02:55:24,433 | INFO     | ..............................
[2025-10-12 19:55:58] 2025-10-13 02:55:24,434 | INFO     | . Timing measurements:
[2025-10-12 19:55:58] 2025-10-13 02:55:24,434 | INFO     | . get job = 0 s
[2025-10-12 19:55:58] 2025-10-13 02:55:24,434 | INFO     | . initial setup = 3 s
[2025-10-12 19:55:58] 2025-10-13 02:55:24,434 | INFO     | . payload setup = 13 s
[2025-10-12 19:55:58] 2025-10-13 02:55:24,434 | INFO     | . stage-in = 0 s
[2025-10-12 19:55:58] 2025-10-13 02:55:24,434 | INFO     | . payload execution = 39 s
[2025-10-12 19:55:58] 2025-10-13 02:55:24,434 | INFO     | . stage-out = 0 s
[2025-10-12 19:55:58] 2025-10-13 02:55:24,434 | INFO     | . log creation = 0 s
[2025-10-12 19:55:58] 2025-10-13 02:55:24,434 | INFO     | ..............................
[2025-10-12 19:55:58] 2025-10-13 02:55:24,434 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 19:55:58] 2025-10-13 02:55:24,434 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6841069030/pilotlog.txt
[2025-10-12 19:55:58] 2025-10-13 02:55:24,446 | WARNING  | 
[2025-10-12 19:55:58] [begin log extracts]
[2025-10-12 19:55:58] - Log from pilotlog.txt -
[2025-10-12 19:55:58] 2025-10-13 02:55:24,415 | INFO     | extracted standard info from prmon json
[2025-10-12 19:55:58] 2025-10-13 02:55:24,415 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 19:55:58] 2025-10-13 02:55:24,415 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 19:55:58] 2025-10-13 02:55:24,415 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 19:55:58] 2025-10-13 02:55:24,415 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 19:55:58] 2025-10-13 02:55:24,416 | WARNING  | wrong length of table data, x=[1760323964.0], y=[1637.0] (must be same and length>=4)
[2025-10-12 19:55:58] 2025-10-13 02:55:24,416 | INFO     | could have reported an average CPU frequency of 2743 MHz (4 samples)
[2025-10-12 19:55:58] 2025-10-13 02:55:24,433 | INFO     | time since job start (219s) is within the limit (172800.0s)
[2025-10-12 19:55:58] 2025-10-13 02:55:24,433 | INFO     | ..............................
[2025-10-12 19:55:58] 2025-10-13 02:55:24,434 | INFO     | . Timing measurements:
[2025-10-12 19:55:58] 2025-10-13 02:55:24,434 | INFO     | . get job = 0 s
[2025-10-12 19:55:58] 2025-10-13 02:55:24,434 | INFO     | . initial setup = 3 s
[2025-10-12 19:55:58] 2025-10-13 02:55:24,434 | INFO     | . payload setup = 13 s
[2025-10-12 19:55:58] 2025-10-13 02:55:24,434 | INFO     | . stage-in = 0 s
[2025-10-12 19:55:58] 2025-10-13 02:55:24,434 | INFO     | . payload execution = 39 s
[2025-10-12 19:55:58] 2025-10-13 02:55:24,434 | INFO     | . stage-out = 0 s
[2025-10-12 19:55:58] 2025-10-13 02:55:24,434 | INFO     | . log creation = 0 s
[2025-10-12 19:55:58] 2025-10-13 02:55:24,434 | INFO     | ..............................
[2025-10-12 19:55:58] 2025-10-13 02:55:24,434 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 19:55:58] 2025-10-13 02:55:24,434 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6841069030/pilotlog.txt
[2025-10-12 19:55:58] [end log extracts]
[2025-10-12 19:55:58] 2025-10-13 02:55:24,447 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-12 19:55:58] 2025-10-13 02:55:24,447 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-10-12 19:55:58] 2025-10-13 02:55:24,542 | INFO     | 
[2025-10-12 19:55:58] 2025-10-13 02:55:24,542 | INFO     | job summary report
[2025-10-12 19:55:58] 2025-10-13 02:55:24,542 | INFO     | --------------------------------------------------
[2025-10-12 19:55:58] 2025-10-13 02:55:24,542 | INFO     | PanDA job id: 6841069030
[2025-10-12 19:55:58] 2025-10-13 02:55:24,542 | INFO     | task id: 46676269
[2025-10-12 19:55:58] 2025-10-13 02:55:24,542 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-12 19:53:05,881 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-12 19:55:58] 2025-10-13 02:55:24,542 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 19:55:58] 2025-10-13 02:55:24,542 | INFO     | pilot state: failed 
[2025-10-12 19:55:58] 2025-10-13 02:55:24,542 | INFO     | transexitcode: 65
[2025-10-12 19:55:58] 2025-10-13 02:55:24,542 | INFO     | exeerrorcode: 65
[2025-10-12 19:55:58] 2025-10-13 02:55:24,542 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-10-12 19:55:58] 2025-10-13 02:55:24,542 | INFO     | exitcode: 65
[2025-10-12 19:55:58] 2025-10-13 02:55:24,542 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-10-12 19:55:58] 2025-10-13 02:55:24,542 | INFO     | cpuconsumptiontime: 15 s
[2025-10-12 19:55:58] 2025-10-13 02:55:24,542 | INFO     | nevents: 0
[2025-10-12 19:55:58] 2025-10-13 02:55:24,542 | INFO     | neventsw: 0
[2025-10-12 19:55:58] 2025-10-13 02:55:24,543 | INFO     | pid: 1555923
[2025-10-12 19:55:58] 2025-10-13 02:55:24,543 | INFO     | pgrp: 1555923
[2025-10-12 19:55:58] 2025-10-13 02:55:24,543 | INFO     | corecount: 12
[2025-10-12 19:55:58] 2025-10-13 02:55:24,543 | INFO     | event service: False
[2025-10-12 19:55:58] 2025-10-13 02:55:24,543 | INFO     | sizes: {0: 2348854, 11: 2348854, 12: 2349144, 22: 2349172, 56: 2372630, 57: 2377054, 60: 2377054, 187: 2377220}
[2025-10-12 19:55:58] 2025-10-13 02:55:24,543 | INFO     | --------------------------------------------------
[2025-10-12 19:55:58] 2025-10-13 02:55:24,543 | INFO     | 
[2025-10-12 19:55:58] 2025-10-13 02:55:24,543 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-10-12 19:55:58] 2025-10-13 02:55:24,594 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 19:55:58] 2025-10-13 02:55:24,594 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 19:55:58] 2025-10-13 02:55:24,594 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 19:55:58] 2025-10-13 02:55:24,594 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 19:55:58] 2025-10-13 02:55:24,594 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 19:55:58] 2025-10-13 02:55:24,594 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 19:55:58] 2025-10-13 02:55:24,595 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 19:55:58] 2025-10-13 02:55:24,595 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 19:55:58] 2025-10-13 02:55:24,595 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 19:55:58] 2025-10-13 02:55:24,595 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 19:55:58] 2025-10-13 02:55:24,595 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 19:55:58] 2025-10-13 02:55:24,595 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 19:55:58] 2025-10-13 02:55:24,595 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 19:55:58] 2025-10-13 02:55:24,595 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 19:55:58] 2025-10-13 02:55:24,595 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 19:55:58] 2025-10-13 02:55:24,595 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 19:55:58] 2025-10-13 02:55:24,595 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 19:55:58] 2025-10-13 02:55:24,595 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 19:55:58] 2025-10-13 02:55:24,595 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 19:55:58] 2025-10-13 02:55:24,595 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 19:55:58] 2025-10-13 02:55:24,595 | INFO     | job 6841069030 has completed (purged errors)
[2025-10-12 19:55:58] 2025-10-13 02:55:24,595 | INFO     | overall cleanup function is called
[2025-10-12 19:55:58] 2025-10-13 02:55:25,602 | INFO     | --- collectZombieJob: --- 10, [1555923]
[2025-10-12 19:55:58] 2025-10-13 02:55:25,603 | INFO     | zombie collector waiting for pid 1555923
[2025-10-12 19:55:58] 2025-10-13 02:55:25,603 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 19:55:58] 2025-10-13 02:55:25,603 | INFO     | collected zombie processes
[2025-10-12 19:55:58] 2025-10-13 02:55:25,603 | INFO     | will attempt to kill all subprocesses of pid=1555923
[2025-10-12 19:55:58] 2025-10-13 02:55:25,824 | INFO     | process IDs to be killed: [1555923] (in reverse order)
[2025-10-12 19:55:58] 2025-10-13 02:55:25,880 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 19:55:58] 2025-10-13 02:55:25,880 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 19:55:58] 2025-10-13 02:55:25,892 | INFO     | did not find any defunct processes belonging to 1555923
[2025-10-12 19:55:58] 2025-10-13 02:55:25,903 | INFO     | did not find any defunct processes belonging to 1555923
[2025-10-12 19:55:58] 2025-10-13 02:55:25,904 | INFO     | ready for new job
[2025-10-12 19:55:58] 2025-10-13 02:55:25,905 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 19:55:58] 2025-10-13 02:55:25,907 | INFO     | ***************************************
[2025-10-12 19:55:58] 2025-10-13 02:55:25,908 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 19:55:58] 2025-10-13 02:55:25,908 | INFO     | ***************************************
[2025-10-12 19:55:58] 2025-10-13 02:55:25,908 | INFO     | 
[2025-10-12 19:55:58] 2025-10-13 02:55:25,911 | INFO     | architecture information:
[2025-10-12 19:55:58] 2025-10-13 02:55:25,912 | INFO     | executing command: cat /etc/os-release
[2025-10-12 19:55:58] 2025-10-13 02:55:25,929 | INFO     | cat /etc/os-release:
[2025-10-12 19:55:58] NAME="CentOS Linux"
[2025-10-12 19:55:58] VERSION="7 (Core)"
[2025-10-12 19:55:58] ID="centos"
[2025-10-12 19:55:58] ID_LIKE="rhel fedora"
[2025-10-12 19:55:58] VERSION_ID="7"
[2025-10-12 19:55:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 19:55:58] ANSI_COLOR="0;31"
[2025-10-12 19:55:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 19:55:58] HOME_URL="https://www.centos.org/"
[2025-10-12 19:55:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 19:55:58] 
[2025-10-12 19:55:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 19:55:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 19:55:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 19:55:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 19:55:58] 
[2025-10-12 19:55:58] 2025-10-13 02:55:25,929 | INFO     | ***************************************
[2025-10-12 19:55:58] 2025-10-13 02:55:26,433 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-10-12 19:55:58] 2025-10-13 02:55:26,458 | INFO     | sufficient remaining disk space (2391654006784 B)
[2025-10-12 19:55:58] 2025-10-13 02:55:26,461 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 19:55:58] 2025-10-13 02:55:26,461 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 19:55:58] 2025-10-13 02:55:26,462 | INFO     | update_server=False
[2025-10-12 19:55:58] 2025-10-13 02:55:26,462 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 19:55:58] 2025-10-13 02:55:26,463 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:55:58] 2025-10-13 02:55:26,701 | INFO     | all job control threads have been joined
[2025-10-12 19:55:58] 2025-10-13 02:55:27,074 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:55:58] 2025-10-13 02:55:27,074 | INFO     | aborting loop
[2025-10-12 19:55:58] 2025-10-13 02:55:27,160 | INFO     | all data control threads have been joined
[2025-10-12 19:55:58] 2025-10-13 02:55:27,467 | INFO     | [job] retrieve thread has finished
[2025-10-12 19:55:58] 2025-10-13 02:55:27,469 | INFO     | [job] queue monitor thread has finished
[2025-10-12 19:55:58] 2025-10-13 02:55:27,664 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 19:55:58] 2025-10-13 02:55:27,700 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 19:55:58] 2025-10-13 02:55:27,707 | INFO     | [job] control thread has finished
[2025-10-12 19:55:58] 2025-10-13 02:55:27,846 | INFO     | all payload control threads have been joined
[2025-10-12 19:55:58] 2025-10-13 02:55:27,865 | INFO     | [job] validate thread has finished
[2025-10-12 19:55:58] 2025-10-13 02:55:27,945 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 19:55:58] 2025-10-13 02:55:27,991 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 19:55:58] 2025-10-13 02:55:28,005 | INFO     | [data] copytool_in thread has finished
[2025-10-12 19:55:58] 2025-10-13 02:55:28,080 | INFO     | [job] job monitor thread has finished
[2025-10-12 19:55:58] 2025-10-13 02:55:28,165 | INFO     | [data] control thread has finished
[2025-10-12 19:55:58] 2025-10-13 02:55:28,268 | INFO     | [payload] failed_post thread has finished
[2025-10-12 19:55:58] 2025-10-13 02:55:28,729 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 19:55:58] 2025-10-13 02:55:28,852 | INFO     | [payload] control thread has finished
[2025-10-12 19:55:58] 2025-10-13 02:55:28,890 | INFO     | [payload] validate_post thread has finished
[2025-10-12 19:55:58] 2025-10-13 02:55:29,633 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 19:55:58] 2025-10-13 02:55:29,706 | INFO     | [data] copytool_out thread has finished
[2025-10-12 19:55:58] 2025-10-13 02:55:33,642 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 19:55:58] 2025-10-13 02:55:44,692 | INFO     | [monitor] cgroup control has ended
[2025-10-12 19:55:58] 2025-10-13 02:55:46,281 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140145187620672)>', '<ExcThread(monitor, started 140144480859904)>']
[2025-10-12 19:55:58] 2025-10-13 02:55:51,307 | INFO     | all workflow threads have been joined
[2025-10-12 19:55:58] 2025-10-13 02:55:51,307 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 19:55:58] 2025-10-13 02:55:51,307 | INFO     | traces error code: 0
[2025-10-12 19:55:58] 2025-10-13 02:55:51,308 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 19:55:58] 2025-10-13 02:55:57,777 | INFO     | PID=1549268 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 19:55:58] 2025-10-13 02:55:57,777 | INFO     | .. there are 28 such processes running
[2025-10-12 19:55:58] 2025-10-13 02:55:57,778 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 19:55:58] 2025-10-13 02:55:57,778 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 19:55:58] 2025-10-13 02:55:57,778 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 19:55:58] 2025-10-13 02:55:57,778 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 19:55:58] 2025-10-13 02:55:57,778 | INFO     | [monitor] control thread has ended
[2025-10-12 19:55:58] 2025-10-13 02:55:57,930 [wrapper] ==== pilot stdout END ====
[2025-10-12 19:55:58] 2025-10-13 02:55:57,937 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 19:55:58] 2025-10-13 02:55:57,941 [wrapper] pilotpid: 1549268
[2025-10-12 19:55:58] 2025-10-13 02:55:57,945 [wrapper] Pilot exit status: 0
[2025-10-12 19:55:58] 2025-10-13 02:55:57,965 [wrapper] pandaids: 6841069030
[2025-10-12 19:55:58] 2025-10-13 02:55:58,031 [wrapper] cleanup supervisor_pilot 1549274 1549269
[2025-10-12 19:55:58] 2025-10-13 02:55:58,034 [wrapper] Test setup, not cleaning
[2025-10-12 19:55:58] 2025-10-13 02:55:58,036 [wrapper] apfmon messages muted
[2025-10-12 19:55:58] 2025-10-13 02:55:58,038 [wrapper] ==== wrapper stdout END ====
[2025-10-12 19:55:58] 2025-10-13 02:55:58,042 [wrapper] ==== wrapper stderr END ====
[2025-10-12 19:55:58]  *** Error codes and diagnostics ***
[2025-10-12 19:55:58]     "exeErrorCode": 65,
[2025-10-12 19:55:58]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-10-12 19:55:58]     "pilotErrorCode": 1305,
[2025-10-12 19:55:58]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-10-12 19:55:58]  *** Listing of results directory ***
[2025-10-12 19:55:58] total 220004
[2025-10-12 19:55:58] -rw-r--r--. 1 boinc boinc    557409 Oct 12 17:11 pilot3.tar.gz
[2025-10-12 19:55:58] -rwx------. 1 boinc boinc     36292 Oct 12 17:33 runpilot2-wrapper.sh
[2025-10-12 19:55:58] -rw-r--r--. 1 boinc boinc      5112 Oct 12 17:33 queuedata.json
[2025-10-12 19:55:58] -rw-r--r--. 1 boinc boinc       100 Oct 12 19:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 19:55:58] -rwxr-xr-x. 1 boinc boinc      7986 Oct 12 19:51 run_atlas
[2025-10-12 19:55:58] -rw-r--r--. 1 boinc boinc       105 Oct 12 19:51 job.xml
[2025-10-12 19:55:58] -rw-r--r--. 1 boinc boinc      6627 Oct 12 19:51 init_data.xml
[2025-10-12 19:55:58] -rw-r--r--. 2 boinc boinc 221161282 Oct 12 19:51 EVNT.46676267._004696.pool.root.1
[2025-10-12 19:55:58] -rw-r--r--. 2 boinc boinc     15120 Oct 12 19:51 start_atlas.sh
[2025-10-12 19:55:58] drwxrwx--x. 2 boinc boinc      4096 Oct 12 19:51 shared
[2025-10-12 19:55:58] -rw-r--r--. 2 boinc boinc    569679 Oct 12 19:51 input.tar.gz
[2025-10-12 19:55:58] -rw-r--r--. 1 boinc boinc         0 Oct 12 19:51 boinc_lockfile
[2025-10-12 19:55:58] -rw-r--r--. 1 boinc boinc      2550 Oct 12 19:51 pandaJob.out
[2025-10-12 19:55:58] -rw-------. 1 boinc boinc    974373 Oct 12 19:51 agis_schedconf.cvmfs.json
[2025-10-12 19:55:58] -rw-------. 1 boinc boinc   1560580 Oct 12 19:51 agis_ddmendpoints.agis.ALL.json
[2025-10-12 19:55:58] drwx------. 5 boinc boinc      4096 Oct 12 19:51 pilot3
[2025-10-12 19:55:58] -rw-r--r--. 1 boinc boinc       523 Oct 12 19:53 boinc_task_state.xml
[2025-10-12 19:55:58] -rw-------. 1 boinc boinc       954 Oct 12 19:53 memory_monitor_summary.json
[2025-10-12 19:55:58] -rw-------. 1 boinc boinc     21915 Oct 12 19:53 log.46676269._093239.job.log.tgz.1
[2025-10-12 19:55:58] -rw-------. 1 boinc boinc      8404 Oct 12 19:55 heartbeat.json
[2025-10-12 19:55:58] -rw-r--r--. 1 boinc boinc      8192 Oct 12 19:55 boinc_mmap_file
[2025-10-12 19:55:58] -rw-r--r--. 1 boinc boinc        22 Oct 12 19:55 wrapper_checkpoint.txt
[2025-10-12 19:55:58] -rw-------. 1 boinc boinc        95 Oct 12 19:55 pilot_heartbeat.json
[2025-10-12 19:55:58] -rw-------. 1 boinc boinc       823 Oct 12 19:55 pilotlog.txt
[2025-10-12 19:55:58] -rw-------. 1 boinc boinc     90023 Oct 12 19:55 log.46676269._093239.job.log.1
[2025-10-12 19:55:58] -rw-------. 1 boinc boinc       188 Oct 12 19:55 output.list
[2025-10-12 19:55:58] -rw-r--r--. 1 boinc boinc       620 Oct 12 19:55 runtime_log
[2025-10-12 19:55:58] -rw-------. 1 boinc boinc    133120 Oct 12 19:55 result.tar.gz
[2025-10-12 19:55:58] -rw-------. 1 boinc boinc       645 Oct 12 19:55 YbeKDm0fLS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmoCmNDmT3leRo.diag
[2025-10-12 19:55:58] -rw-r--r--. 1 boinc boinc      8528 Oct 12 19:55 runtime_log.err
[2025-10-12 19:55:58] -rw-r--r--. 1 boinc boinc     21731 Oct 12 19:55 stderr.txt
[2025-10-12 19:55:58] No HITS result produced
[2025-10-12 19:55:58]  *** Contents of shared directory: ***
[2025-10-12 19:55:58] total 216692
[2025-10-12 19:55:58] -rw-r--r--. 2 boinc boinc 221161282 Oct 12 19:51 ATLAS.root_0
[2025-10-12 19:55:58] -rw-r--r--. 2 boinc boinc     15120 Oct 12 19:51 start_atlas.sh
[2025-10-12 19:55:58] -rw-r--r--. 2 boinc boinc    569679 Oct 12 19:51 input.tar.gz
[2025-10-12 19:55:58] -rw-------. 1 boinc boinc    133120 Oct 12 19:55 result.tar.gz
19:56:00 (1545555): run_atlas exited; CPU time 23.071636
19:56:00 (1545555): called boinc_finish(0)

</stderr_txt>
]]>

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