Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:00:23 (2469740): wrapper (7.7.26015): starting
06:00:23 (2469740): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 06:00:23] Arguments: --nthreads 3
[2025-10-13 06:00:23] Threads: 3
[2025-10-13 06:00:23] Checking for CVMFS
[2025-10-13 06:00:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 06:00:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 06:00:23] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 06:00:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 06:00:23] 2.9.2.0 842304 5266 83932 151647 2 57 2693352 36864000 0 130560 0 4265961 99.991 179970 880 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 06:00:23] CVMFS is ok
[2025-10-13 06:00:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 06:00:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 06:00:23] Further information can be found at the LHC@home message board.
[2025-10-13 06:00:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 06:00:23] Checking for apptainer binary...
[2025-10-13 06:00:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 06:00:23] Running /usr/bin/apptainer --version
[2025-10-13 06:00:23] apptainer version 1.4.1-1.1
[2025-10-13 06:00:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 06:00:23] thA330a
[2025-10-13 06:00:23] apptainer works
[2025-10-13 06:00:23] Set ATHENA_PROC_NUMBER=3
[2025-10-13 06:00:23] Set ATHENA_CORE_NUMBER=3
[2025-10-13 06:00:23] Starting ATLAS job with PandaID=6840750879
[2025-10-13 06:00:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 07:19:43]  *** The last 200 lines of the pilot log: ***
[2025-10-13 07:19:43] 2025-10-13 05:19:06,419 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 07:19:43] 2025-10-13 05:19:06,419 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 07:19:43] 2025-10-13 05:19:06,419 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 07:19:43] 2025-10-13 05:19:06,419 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 07:19:43] 2025-10-13 05:19:06,419 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 07:19:43] 2025-10-13 05:19:06,419 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 07:19:43] 2025-10-13 05:19:06,419 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 07:19:43] 2025-10-13 05:19:06,419 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 07:19:43] 2025-10-13 05:19:06,419 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 07:19:43] 2025-10-13 05:19:06,419 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 07:19:43] 2025-10-13 05:19:06,419 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 07:19:43] 2025-10-13 05:19:06,419 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 07:19:43] 2025-10-13 05:19:06,419 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 07:19:43] 2025-10-13 05:19:06,419 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 07:19:43] 2025-10-13 05:19:06,419 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 07:19:43] 2025-10-13 05:19:06,419 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 07:19:43] 2025-10-13 05:19:06,419 | INFO     | job 6840750879 has completed (purged errors)
[2025-10-13 07:19:43] 2025-10-13 05:19:06,419 | INFO     | overall cleanup function is called
[2025-10-13 07:19:43] 2025-10-13 05:19:07,426 | INFO     | --- collectZombieJob: --- 10, [2479890]
[2025-10-13 07:19:43] 2025-10-13 05:19:07,426 | INFO     | zombie collector waiting for pid 2479890
[2025-10-13 07:19:43] 2025-10-13 05:19:07,426 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 07:19:43] 2025-10-13 05:19:07,426 | INFO     | collected zombie processes
[2025-10-13 07:19:43] 2025-10-13 05:19:07,426 | INFO     | will attempt to kill all subprocesses of pid=2479890
[2025-10-13 07:19:43] 2025-10-13 05:19:07,474 | INFO     | process IDs to be killed: [2479890] (in reverse order)
[2025-10-13 07:19:43] 2025-10-13 05:19:07,499 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 07:19:43] 2025-10-13 05:19:07,499 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 07:19:43] 2025-10-13 05:19:07,501 | INFO     | did not find any defunct processes belonging to 2479890
[2025-10-13 07:19:43] 2025-10-13 05:19:07,502 | INFO     | did not find any defunct processes belonging to 2479890
[2025-10-13 07:19:43] 2025-10-13 05:19:07,502 | INFO     | ready for new job
[2025-10-13 07:19:43] 2025-10-13 05:19:07,502 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 07:19:43] 2025-10-13 05:19:07,503 | INFO     | ***************************************
[2025-10-13 07:19:43] 2025-10-13 05:19:07,503 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 07:19:43] 2025-10-13 05:19:07,503 | INFO     | ***************************************
[2025-10-13 07:19:43] 2025-10-13 05:19:07,503 | INFO     | 
[2025-10-13 07:19:43] 2025-10-13 05:19:07,503 | INFO     | architecture information:
[2025-10-13 07:19:43] 2025-10-13 05:19:07,503 | INFO     | executing command: cat /etc/os-release
[2025-10-13 07:19:43] 2025-10-13 05:19:07,512 | INFO     | cat /etc/os-release:
[2025-10-13 07:19:43] NAME="CentOS Linux"
[2025-10-13 07:19:43] VERSION="7 (Core)"
[2025-10-13 07:19:43] ID="centos"
[2025-10-13 07:19:43] ID_LIKE="rhel fedora"
[2025-10-13 07:19:43] VERSION_ID="7"
[2025-10-13 07:19:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 07:19:43] ANSI_COLOR="0;31"
[2025-10-13 07:19:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 07:19:43] HOME_URL="https://www.centos.org/"
[2025-10-13 07:19:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 07:19:43] 
[2025-10-13 07:19:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 07:19:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 07:19:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 07:19:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 07:19:43] 
[2025-10-13 07:19:43] 2025-10-13 05:19:07,512 | INFO     | ***************************************
[2025-10-13 07:19:43] 2025-10-13 05:19:08,015 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 07:19:43] 2025-10-13 05:19:08,028 | INFO     | sufficient remaining disk space (259259367424 B)
[2025-10-13 07:19:43] 2025-10-13 05:19:08,028 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 07:19:43] 2025-10-13 05:19:08,028 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 07:19:43] 2025-10-13 05:19:08,028 | INFO     | update_server=False
[2025-10-13 07:19:43] 2025-10-13 05:19:08,028 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 07:19:43] 2025-10-13 05:19:08,028 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 07:19:43] 2025-10-13 05:19:08,028 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 07:19:43] 2025-10-13 05:19:08,028 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 07:19:43] 2025-10-13 05:19:08,028 | INFO     | aborting loop
[2025-10-13 07:19:43] 2025-10-13 05:19:08,867 | INFO     | all data control threads have been joined
[2025-10-13 07:19:43] 2025-10-13 05:19:09,034 | INFO     | [job] retrieve thread has finished
[2025-10-13 07:19:43] 2025-10-13 05:19:09,034 | INFO     | [job] queue monitor thread has finished
[2025-10-13 07:19:43] 2025-10-13 05:19:09,034 | INFO     | [job] job monitor thread has finished
[2025-10-13 07:19:43] 2025-10-13 05:19:09,107 | INFO     | all payload control threads have been joined
[2025-10-13 07:19:43] 2025-10-13 05:19:09,138 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 07:19:43] 2025-10-13 05:19:09,177 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 07:19:43] 2025-10-13 05:19:09,422 | INFO     | [payload] failed_post thread has finished
[2025-10-13 07:19:43] 2025-10-13 05:19:09,528 | INFO     | [data] copytool_in thread has finished
[2025-10-13 07:19:43] 2025-10-13 05:19:09,684 | INFO     | all job control threads have been joined
[2025-10-13 07:19:43] 2025-10-13 05:19:09,854 | INFO     | [payload] validate_post thread has finished
[2025-10-13 07:19:43] 2025-10-13 05:19:09,873 | INFO     | [data] control thread has finished
[2025-10-13 07:19:43] 2025-10-13 05:19:10,068 | INFO     | [job] validate thread has finished
[2025-10-13 07:19:43] 2025-10-13 05:19:10,113 | INFO     | [payload] control thread has finished
[2025-10-13 07:19:43] 2025-10-13 05:19:10,128 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 07:19:43] 2025-10-13 05:19:10,208 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 07:19:43] 2025-10-13 05:19:10,690 | INFO     | [job] control thread has finished
[2025-10-13 07:19:43] 2025-10-13 05:19:11,144 | INFO     | [data] copytool_out thread has finished
[2025-10-13 07:19:43] 2025-10-13 05:19:12,035 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 07:19:43] 2025-10-13 05:19:18,083 | INFO     | job.realtimelogging is not enabled
[2025-10-13 07:19:43] 2025-10-13 05:19:19,088 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 07:19:43] 2025-10-13 05:19:36,218 | INFO     | [monitor] cgroup control has ended
[2025-10-13 07:19:43] 2025-10-13 05:19:37,725 | INFO     | PID=2473458 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 07:19:43] 2025-10-13 05:19:37,725 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 07:19:43] 2025-10-13 05:19:37,725 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 07:19:43] 2025-10-13 05:19:37,725 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 07:19:43] 2025-10-13 05:19:38,329 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140398231177024)>', '<ExcThread(monitor, started 140397867144960)>']
[2025-10-13 07:19:43] 2025-10-13 05:19:38,731 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 07:19:43] 2025-10-13 05:19:38,731 | INFO     | [monitor] control thread has ended
[2025-10-13 07:19:43] 2025-10-13 05:19:43,355 | INFO     | all workflow threads have been joined
[2025-10-13 07:19:43] 2025-10-13 05:19:43,355 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 07:19:43] 2025-10-13 05:19:43,355 | INFO     | traces error code: 0
[2025-10-13 07:19:43] 2025-10-13 05:19:43,356 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 07:19:43] 2025-10-13 05:19:43,407 [wrapper] ==== pilot stdout END ====
[2025-10-13 07:19:43] 2025-10-13 05:19:43,409 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 07:19:43] 2025-10-13 05:19:43,411 [wrapper] pilotpid: 2473458
[2025-10-13 07:19:43] 2025-10-13 05:19:43,414 [wrapper] Pilot exit status: 0
[2025-10-13 07:19:43] 2025-10-13 05:19:43,421 [wrapper] pandaids: 6840750879
[2025-10-13 07:19:43] 2025-10-13 05:19:43,438 [wrapper] cleanup supervisor_pilot 2492025 2473459
[2025-10-13 07:19:43] 2025-10-13 05:19:43,440 [wrapper] Test setup, not cleaning
[2025-10-13 07:19:43] 2025-10-13 05:19:43,442 [wrapper] apfmon messages muted
[2025-10-13 07:19:43] 2025-10-13 05:19:43,445 [wrapper] ==== wrapper stdout END ====
[2025-10-13 07:19:43] 2025-10-13 05:19:43,447 [wrapper] ==== wrapper stderr END ====
[2025-10-13 07:19:43]  *** Error codes and diagnostics ***
[2025-10-13 07:19:43]     "exeErrorCode": 0,
[2025-10-13 07:19:43]     "exeErrorDiag": "",
[2025-10-13 07:19:43]     "pilotErrorCode": 0,
[2025-10-13 07:19:43]     "pilotErrorDiag": "",
[2025-10-13 07:19:43]  *** Listing of results directory ***
[2025-10-13 07:19:43] total 411320
[2025-10-13 07:19:43] -rw-r--r-- 1 boinc boinc    557409 Oct 12 23:31 pilot3.tar.gz
[2025-10-13 07:19:43] -rw-r--r-- 1 boinc boinc      5112 Oct 12 23:33 queuedata.json
[2025-10-13 07:19:43] -rwx------ 1 boinc boinc     36292 Oct 12 23:36 runpilot2-wrapper.sh
[2025-10-13 07:19:43] -rw-r--r-- 1 boinc boinc       100 Oct 13 06:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 07:19:43] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 06:00 run_atlas
[2025-10-13 07:19:43] -rw-r--r-- 1 boinc boinc       105 Oct 13 06:00 job.xml
[2025-10-13 07:19:43] -rw-r--r-- 2 boinc boinc 220289929 Oct 13 06:00 EVNT.46676267._004837.pool.root.1
[2025-10-13 07:19:43] drwxrwx--x 2 boinc boinc      4096 Oct 13 06:00 shared
[2025-10-13 07:19:43] -rw-r--r-- 2 boinc boinc    569677 Oct 13 06:00 input.tar.gz
[2025-10-13 07:19:43] -rw-r--r-- 2 boinc boinc     15120 Oct 13 06:00 start_atlas.sh
[2025-10-13 07:19:43] -rw-r--r-- 1 boinc boinc         0 Oct 13 06:00 boinc_setup_complete
[2025-10-13 07:19:43] -rw-r--r-- 1 boinc boinc      6439 Oct 13 06:00 init_data.xml
[2025-10-13 07:19:43] -rw-r--r-- 1 boinc boinc         0 Oct 13 06:00 boinc_lockfile
[2025-10-13 07:19:43] -rw-r--r-- 1 boinc boinc      2548 Oct 13 06:00 pandaJob.out
[2025-10-13 07:19:43] -rw------- 1 boinc boinc    974373 Oct 13 06:00 agis_schedconf.cvmfs.json
[2025-10-13 07:19:43] -rw------- 1 boinc boinc   1560580 Oct 13 06:00 agis_ddmendpoints.agis.ALL.json
[2025-10-13 07:19:43] drwx------ 5 boinc boinc      4096 Oct 13 06:00 pilot3
[2025-10-13 07:19:43] -rw------- 1 boinc boinc 195140882 Oct 13 07:18 HITS.46676269._090098.pool.root.1
[2025-10-13 07:19:43] -rw-r--r-- 1 boinc boinc       529 Oct 13 07:18 boinc_task_state.xml
[2025-10-13 07:19:43] -rw------- 1 boinc boinc        95 Oct 13 07:18 pilot_heartbeat.json
[2025-10-13 07:19:43] -rw------- 1 boinc boinc      1018 Oct 13 07:18 memory_monitor_summary.json
[2025-10-13 07:19:43] -rw------- 1 boinc boinc    238204 Oct 13 07:19 log.46676269._090098.job.log.tgz.1
[2025-10-13 07:19:43] -rw------- 1 boinc boinc      7758 Oct 13 07:19 heartbeat.json
[2025-10-13 07:19:43] -rw-r--r-- 1 boinc boinc      8192 Oct 13 07:19 boinc_mmap_file
[2025-10-13 07:19:43] -rw-r--r-- 1 boinc boinc        27 Oct 13 07:19 wrapper_checkpoint.txt
[2025-10-13 07:19:43] -rw------- 1 boinc boinc      4824 Oct 13 07:19 pilotlog.txt
[2025-10-13 07:19:43] -rw------- 1 boinc boinc    694874 Oct 13 07:19 log.46676269._090098.job.log.1
[2025-10-13 07:19:43] -rw------- 1 boinc boinc       357 Oct 13 07:19 output.list
[2025-10-13 07:19:43] -rw-r--r-- 1 boinc boinc       620 Oct 13 07:19 runtime_log
[2025-10-13 07:19:43] -rw------- 1 boinc boinc    952320 Oct 13 07:19 result.tar.gz
[2025-10-13 07:19:43] -rw-r--r-- 1 boinc boinc      8782 Oct 13 07:19 runtime_log.err
[2025-10-13 07:19:43] -rw------- 1 boinc boinc       659 Oct 13 07:19 qn8NDmVvIS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmmhlNDmd8k9Fm.diag
[2025-10-13 07:19:43] -rw-r--r-- 1 boinc boinc     12544 Oct 13 07:19 stderr.txt
[2025-10-13 07:19:43] HITS file was successfully produced:
[2025-10-13 07:19:43] -rw------- 1 boinc boinc 195140882 Oct 13 07:18 shared/HITS.pool.root.1
[2025-10-13 07:19:43]  *** Contents of shared directory: ***
[2025-10-13 07:19:43] total 407212
[2025-10-13 07:19:43] -rw-r--r-- 2 boinc boinc 220289929 Oct 13 06:00 ATLAS.root_0
[2025-10-13 07:19:43] -rw-r--r-- 2 boinc boinc    569677 Oct 13 06:00 input.tar.gz
[2025-10-13 07:19:43] -rw-r--r-- 2 boinc boinc     15120 Oct 13 06:00 start_atlas.sh
[2025-10-13 07:19:43] -rw------- 1 boinc boinc 195140882 Oct 13 07:18 HITS.pool.root.1
[2025-10-13 07:19:43] -rw------- 1 boinc boinc    952320 Oct 13 07:19 result.tar.gz
07:19:44 (2469740): run_atlas exited; CPU time 13497.142033
07:19:44 (2469740): called boinc_finish(0)

</stderr_txt>
]]>

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