Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:51:46 (644281): wrapper (7.7.26015): starting
22:51:46 (644281): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 22:51:46] Arguments: --nthreads 12
[2025-10-12 22:51:46] Threads: 12
[2025-10-12 22:51:46] Checking for CVMFS
[2025-10-12 22:51:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 22:51:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 22:51:47] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 22:51:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 22:51:47] 2.13.2.0 3683012 13651 148992 151645 1 188 38096509 40960001 5645 16776704 0 157858605 99.870 55101078 32595 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 22:51:47] CVMFS is ok
[2025-10-12 22:51:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 22:51:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 22:51:47] Further information can be found at the LHC@home message board.
[2025-10-12 22:51:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 22:51:47] Checking for apptainer binary...
[2025-10-12 22:51:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 22:51:47] Running /usr/bin/apptainer --version
[2025-10-12 22:51:47] apptainer version 1.4.3-1.el9
[2025-10-12 22:51:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 22:51:47] c8-7-4.aglt2.org
[2025-10-12 22:51:47] apptainer works
[2025-10-12 22:51:47] Set ATHENA_PROC_NUMBER=12
[2025-10-12 22:51:47] Set ATHENA_CORE_NUMBER=12
[2025-10-12 22:51:47] Starting ATLAS job with PandaID=6838912940
[2025-10-12 22:51:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 23:19:03]  *** The last 200 lines of the pilot log: ***
[2025-10-12 23:19:03]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 23:19:03]  replicas=None
[2025-10-12 23:19:03]  scope=mc23_13p6TeV
[2025-10-12 23:19:03]  status=None
[2025-10-12 23:19:03]  status_code=0
[2025-10-12 23:19:03]  storage_token=
[2025-10-12 23:19:03]  surl=/tmp/boinchome/slots/3/PanDA_Pilot-6838912940/log.46676269._064770.job.log.tgz.1
[2025-10-12 23:19:03]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/03/e2/log.46676269._064770.job.log.tgz.1
[2025-10-12 23:19:03]  workdir=None
[2025-10-12 23:19:03] ]
[2025-10-12 23:19:03] 2025-10-13 03:18:05,046 | INFO     | transferring file log.46676269._064770.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6838912940/log.46676269._064770.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 23:19:03] 2025-10-13 03:18:05,046 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6838912940/log.46676269._064770.job.log.tgz.1 /tmp/boinchome/slots/3/log.46676269._064770.job
[2025-10-12 23:19:03] 2025-10-13 03:18:05,062 | INFO     | adding to output.list: log.46676269._064770.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/03/e2/log.46676269._064770.job.log.tg
[2025-10-12 23:19:03] 2025-10-13 03:18:05,063 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 23:19:03] 2025-10-13 03:18:05,063 | INFO     | summary of transferred files:
[2025-10-12 23:19:03] 2025-10-13 03:18:05,063 | INFO     |  -- lfn=log.46676269._064770.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 23:19:03] 2025-10-13 03:18:05,063 | INFO     | stage-out finished correctly
[2025-10-12 23:19:03] 2025-10-13 03:18:05,876 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 23:19:03] 2025-10-13 03:18:05,930 | INFO     | job 6838912940 has state=finished
[2025-10-12 23:19:03] 2025-10-13 03:18:05,930 | INFO     | preparing for final server update for job 6838912940 in state='finished'
[2025-10-12 23:19:03] 2025-10-13 03:18:05,930 | INFO     | this job has now completed (state=finished)
[2025-10-12 23:19:03] 2025-10-13 03:18:05,931 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 23:19:03] 2025-10-13 03:18:05,931 | INFO     | log transfer has been attempted: DONE
[2025-10-12 23:19:03] 2025-10-13 03:18:05,931 | INFO     | job 6838912940 has finished - writing final server update
[2025-10-12 23:19:03] 2025-10-13 03:18:05,931 | INFO     | total number of processed events: 400 (read)
[2025-10-12 23:19:03] 2025-10-13 03:18:05,932 | INFO     | executing command: lscpu
[2025-10-12 23:19:03] 2025-10-13 03:18:05,994 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 23:19:03] 2025-10-13 03:18:06,136 | INFO     | time since job start (1570s) is within the limit (172800.0s)
[2025-10-12 23:19:03] 2025-10-13 03:18:08,142 | INFO     | time since job start (1572s) is within the limit (172800.0s)
[2025-10-12 23:19:03] 2025-10-13 03:18:09,622 | INFO     | PID=649609 has CPU usage=8.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 23:19:03] 2025-10-13 03:18:09,623 | INFO     | .. there are 8 such processes running
[2025-10-12 23:19:03] 2025-10-13 03:18:09,675 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 23:19:03] 2025-10-13 03:18:09,681 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3572.44114062499
[2025-10-12 23:19:03] 2025-10-13 03:18:09,697 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6838912940/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 23:19:03] 2025-10-13 03:18:09,698 | INFO     | extracted standard info from prmon json
[2025-10-12 23:19:03] 2025-10-13 03:18:09,698 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 23:19:03] 2025-10-13 03:18:09,698 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 23:19:03] 2025-10-13 03:18:09,698 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 23:19:03] 2025-10-13 03:18:09,698 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 23:19:03] 2025-10-13 03:18:09,699 | INFO     | fitting pss+swap vs Time
[2025-10-12 23:19:03] 2025-10-13 03:18:09,699 | INFO     | sum of square deviations: 2120970.0
[2025-10-12 23:19:03] 2025-10-13 03:18:09,699 | INFO     | sum of deviations: 95202700.0
[2025-10-12 23:19:03] 2025-10-13 03:18:09,699 | INFO     | mean x: 1760324794.0
[2025-10-12 23:19:03] 2025-10-13 03:18:09,700 | INFO     | mean y: 2448261.8421052634
[2025-10-12 23:19:03] 2025-10-13 03:18:09,700 | INFO     | -- intersect: -79012188091.21513
[2025-10-12 23:19:03] 2025-10-13 03:18:09,700 | INFO     | intersect: -79012188091.21513
[2025-10-12 23:19:03] 2025-10-13 03:18:09,700 | INFO     | chi2: 0.0006732272223600207
[2025-10-12 23:19:03] 2025-10-13 03:18:09,700 | INFO     | -- intersect: -79012188091.21513
[2025-10-12 23:19:03] 2025-10-13 03:18:09,700 | INFO     | current memory leak: 44.89 B/s (using 19 data points, chi2=0.00)
[2025-10-12 23:19:03] 2025-10-13 03:18:09,701 | INFO     | could have reported an average CPU frequency of 3570 MHz (4 samples)
[2025-10-12 23:19:03] 2025-10-13 03:18:09,701 | INFO     | ..............................
[2025-10-12 23:19:03] 2025-10-13 03:18:09,701 | INFO     | . Timing measurements:
[2025-10-12 23:19:03] 2025-10-13 03:18:09,701 | INFO     | . get job = 0 s
[2025-10-12 23:19:03] 2025-10-13 03:18:09,701 | INFO     | . initial setup = 2 s
[2025-10-12 23:19:03] 2025-10-13 03:18:09,701 | INFO     | . payload setup = 4 s
[2025-10-12 23:19:03] 2025-10-13 03:18:09,701 | INFO     | . stage-in = 0 s
[2025-10-12 23:19:03] 2025-10-13 03:18:09,701 | INFO     | . payload execution = 1543 s
[2025-10-12 23:19:03] 2025-10-13 03:18:09,701 | INFO     | . stage-out = 0 s
[2025-10-12 23:19:03] 2025-10-13 03:18:09,701 | INFO     | . log creation = 0 s
[2025-10-12 23:19:03] 2025-10-13 03:18:09,701 | INFO     | ..............................
[2025-10-12 23:19:03] 2025-10-13 03:18:09,957 | WARNING  | process 656949 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 23:19:03] 2025-10-13 03:18:09,958 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6838912940/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 23:19:03] 2025-10-13 03:18:10,134 | INFO     | 
[2025-10-12 23:19:03] 2025-10-13 03:18:10,134 | INFO     | job summary report
[2025-10-12 23:19:03] 2025-10-13 03:18:10,134 | INFO     | --------------------------------------------------
[2025-10-12 23:19:03] 2025-10-13 03:18:10,134 | INFO     | PanDA job id: 6838912940
[2025-10-12 23:19:03] 2025-10-13 03:18:10,135 | INFO     | task id: 46676269
[2025-10-12 23:19:03] 2025-10-13 03:18:10,135 | INFO     | errors: (none)
[2025-10-12 23:19:03] 2025-10-13 03:18:10,135 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 23:19:03] 2025-10-13 03:18:10,135 | INFO     | pilot state: finished 
[2025-10-12 23:19:03] 2025-10-13 03:18:10,135 | INFO     | transexitcode: 0
[2025-10-12 23:19:03] 2025-10-13 03:18:10,135 | INFO     | exeerrorcode: 0
[2025-10-12 23:19:03] 2025-10-13 03:18:10,135 | INFO     | exeerrordiag: 
[2025-10-12 23:19:03] 2025-10-13 03:18:10,135 | INFO     | exitcode: 0
[2025-10-12 23:19:03] 2025-10-13 03:18:10,135 | INFO     | exitmsg: OK
[2025-10-12 23:19:03] 2025-10-13 03:18:10,135 | INFO     | cpuconsumptiontime: 16377 s
[2025-10-12 23:19:03] 2025-10-13 03:18:10,135 | INFO     | nevents: 400
[2025-10-12 23:19:03] 2025-10-13 03:18:10,135 | INFO     | neventsw: 0
[2025-10-12 23:19:03] 2025-10-13 03:18:10,135 | INFO     | pid: 656949
[2025-10-12 23:19:03] 2025-10-13 03:18:10,135 | INFO     | pgrp: 656949
[2025-10-12 23:19:03] 2025-10-13 03:18:10,136 | INFO     | corecount: 12
[2025-10-12 23:19:03] 2025-10-13 03:18:10,136 | INFO     | event service: False
[2025-10-12 23:19:03] 2025-10-13 03:18:10,136 | INFO     | sizes: {0: 2348807, 4: 2349069, 11: 2349097, 1551: 2373936, 1553: 2382934, 1554: 2382990, 1558: 2383312}
[2025-10-12 23:19:03] 2025-10-13 03:18:10,136 | INFO     | --------------------------------------------------
[2025-10-12 23:19:03] 2025-10-13 03:18:10,136 | INFO     | 
[2025-10-12 23:19:03] 2025-10-13 03:18:10,136 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-10-12 23:19:03] 2025-10-13 03:18:10,153 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 23:19:03] 2025-10-13 03:18:10,154 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 23:19:03] 2025-10-13 03:18:10,154 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 23:19:03] 2025-10-13 03:18:10,154 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 23:19:03] 2025-10-13 03:18:10,154 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 23:19:03] 2025-10-13 03:18:10,154 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 23:19:03] 2025-10-13 03:18:10,154 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 23:19:03] 2025-10-13 03:18:10,154 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 23:19:03] 2025-10-13 03:18:10,154 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 23:19:03] 2025-10-13 03:18:10,154 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 23:19:03] 2025-10-13 03:18:10,154 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 23:19:03] 2025-10-13 03:18:10,154 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 23:19:03] 2025-10-13 03:18:10,154 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 23:19:03] 2025-10-13 03:18:10,154 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 23:19:03] 2025-10-13 03:18:10,154 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 23:19:03] 2025-10-13 03:18:10,154 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 23:19:03] 2025-10-13 03:18:10,154 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 23:19:03] 2025-10-13 03:18:10,155 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 23:19:03] 2025-10-13 03:18:10,155 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 23:19:03] 2025-10-13 03:18:10,155 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 23:19:03] 2025-10-13 03:18:10,155 | INFO     | job 6838912940 has completed (purged errors)
[2025-10-12 23:19:03] 2025-10-13 03:18:10,155 | INFO     | overall cleanup function is called
[2025-10-12 23:19:03] 2025-10-13 03:18:10,294 | INFO     | number of running child processes to parent process 656949: 1
[2025-10-12 23:19:03] 2025-10-13 03:18:10,294 | INFO     | maximum number of monitored processes: 6
[2025-10-12 23:19:03] 2025-10-13 03:18:10,294 | INFO     | aborting job monitoring since job object (job id=6838912940) has expired
[2025-10-12 23:19:03] 2025-10-13 03:18:11,164 | INFO     | --- collectZombieJob: --- 10, [656949]
[2025-10-12 23:19:03] 2025-10-13 03:18:11,164 | INFO     | zombie collector waiting for pid 656949
[2025-10-12 23:19:03] 2025-10-13 03:18:11,164 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 23:19:03] 2025-10-13 03:18:11,164 | INFO     | collected zombie processes
[2025-10-12 23:19:03] 2025-10-13 03:18:11,164 | INFO     | will attempt to kill all subprocesses of pid=656949
[2025-10-12 23:19:03] 2025-10-13 03:18:11,486 | INFO     | process IDs to be killed: [656949] (in reverse order)
[2025-10-12 23:19:03] 2025-10-13 03:18:11,604 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 23:19:03] 2025-10-13 03:18:11,605 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 23:19:03] 2025-10-13 03:18:11,622 | INFO     | did not find any defunct processes belonging to 656949
[2025-10-12 23:19:03] 2025-10-13 03:18:11,639 | INFO     | did not find any defunct processes belonging to 656949
[2025-10-12 23:19:03] 2025-10-13 03:18:11,639 | INFO     | ready for new job
[2025-10-12 23:19:03] 2025-10-13 03:18:11,639 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 23:19:03] 2025-10-13 03:18:11,641 | INFO     | ***************************************
[2025-10-12 23:19:03] 2025-10-13 03:18:11,641 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 23:19:03] 2025-10-13 03:18:11,641 | INFO     | ***************************************
[2025-10-12 23:19:03] 2025-10-13 03:18:11,641 | INFO     | 
[2025-10-12 23:19:03] 2025-10-13 03:18:11,657 | INFO     | architecture information:
[2025-10-12 23:19:03] 2025-10-13 03:18:11,657 | INFO     | executing command: cat /etc/os-release
[2025-10-12 23:19:03] 2025-10-13 03:18:11,671 | INFO     | cat /etc/os-release:
[2025-10-12 23:19:03] NAME="CentOS Linux"
[2025-10-12 23:19:03] VERSION="7 (Core)"
[2025-10-12 23:19:03] ID="centos"
[2025-10-12 23:19:03] ID_LIKE="rhel fedora"
[2025-10-12 23:19:03] VERSION_ID="7"
[2025-10-12 23:19:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 23:19:03] ANSI_COLOR="0;31"
[2025-10-12 23:19:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 23:19:03] HOME_URL="https://www.centos.org/"
[2025-10-12 23:19:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 23:19:03] 
[2025-10-12 23:19:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 23:19:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 23:19:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 23:19:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 23:19:03] 
[2025-10-12 23:19:03] 2025-10-13 03:18:11,671 | INFO     | ***************************************
[2025-10-12 23:19:03] 2025-10-13 03:18:12,174 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-12 23:19:03] 2025-10-13 03:18:12,189 | INFO     | sufficient remaining disk space (167989215232 B)
[2025-10-12 23:19:03] 2025-10-13 03:18:12,190 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 23:19:03] 2025-10-13 03:18:12,190 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 23:19:03] 2025-10-13 03:18:12,190 | INFO     | update_server=False
[2025-10-12 23:19:03] 2025-10-13 03:18:12,190 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 23:19:03] 2025-10-13 03:18:12,190 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 23:19:03] 2025-10-13 03:18:12,190 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:19:03] 2025-10-13 03:18:12,191 | INFO     | aborting loop
[2025-10-12 23:19:03] 2025-10-13 03:18:12,568 | INFO     | all data control threads have been joined
[2025-10-12 23:19:03] 2025-10-13 03:18:12,871 | INFO     | all payload control threads have been joined
[2025-10-12 23:19:03] 2025-10-13 03:18:13,129 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 23:19:03] 2025-10-13 03:18:13,192 | INFO     | [job] retrieve thread has finished
[2025-10-12 23:19:03] 2025-10-13 03:18:13,195 | INFO     | [job] job monitor thread has finished
[2025-10-12 23:19:03] 2025-10-13 03:18:13,241 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 23:19:03] 2025-10-13 03:18:13,469 | INFO     | all job control threads have been joined
[2025-10-12 23:19:03] 2025-10-13 03:18:13,574 | INFO     | [data] control thread has finished
[2025-10-12 23:19:03] 2025-10-13 03:18:13,759 | INFO     | [data] copytool_in thread has finished
[2025-10-12 23:19:03] 2025-10-13 03:18:13,877 | INFO     | [payload] control thread has finished
[2025-10-12 23:19:03] 2025-10-13 03:18:13,893 | INFO     | [payload] validate_post thread has finished
[2025-10-12 23:19:03] 2025-10-13 03:18:13,988 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 23:19:03] 2025-10-13 03:18:14,303 | INFO     | [job] validate thread has finished
[2025-10-12 23:19:03] 2025-10-13 03:18:14,459 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 23:19:03] 2025-10-13 03:18:14,475 | INFO     | [job] control thread has finished
[2025-10-12 23:19:03] 2025-10-13 03:18:14,535 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 23:19:03] 2025-10-13 03:18:14,746 | INFO     | [payload] failed_post thread has finished
[2025-10-12 23:19:03] 2025-10-13 03:18:14,766 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:19:03] 2025-10-13 03:18:15,135 | INFO     | [data] copytool_out thread has finished
[2025-10-12 23:19:03] 2025-10-13 03:18:15,772 | INFO     | [job] queue monitor thread has finished
[2025-10-12 23:19:03] 2025-10-13 03:18:16,196 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 23:19:03] 2025-10-13 03:18:42,115 | INFO     | PID=649609 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 23:19:03] 2025-10-13 03:18:42,115 | INFO     | .. there are 8 such processes running
[2025-10-12 23:19:03] 2025-10-13 03:18:42,116 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 23:19:03] 2025-10-13 03:18:42,116 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 23:19:03] 2025-10-13 03:18:42,116 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 23:19:03] 2025-10-13 03:18:58,412 | INFO     | [monitor] cgroup control has ended
[2025-10-12 23:19:03] 2025-10-13 03:18:58,524 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139836344997696)>', '<ExcThread(monitor, started 139835855587072)>']
[2025-10-12 23:19:03] 2025-10-13 03:18:59,193 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 23:19:03] 2025-10-13 03:18:59,194 | INFO     | [monitor] control thread has ended
[2025-10-12 23:19:03] 2025-10-13 03:19:03,542 | INFO     | all workflow threads have been joined
[2025-10-12 23:19:03] 2025-10-13 03:19:03,542 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 23:19:03] 2025-10-13 03:19:03,542 | INFO     | traces error code: 0
[2025-10-12 23:19:03] 2025-10-13 03:19:03,542 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 23:19:03] 2025-10-13 03:19:03,631 [wrapper] ==== pilot stdout END ====
[2025-10-12 23:19:03] 2025-10-13 03:19:03,634 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 23:19:03] 2025-10-13 03:19:03,636 [wrapper] pilotpid: 649609
[2025-10-12 23:19:03] 2025-10-13 03:19:03,638 [wrapper] Pilot exit status: 0
[2025-10-12 23:19:03] 2025-10-13 03:19:03,647 [wrapper] pandaids: 6838912940
[2025-10-12 23:19:03] 2025-10-13 03:19:03,735 [wrapper] cleanup supervisor_pilot  765907 649611
[2025-10-12 23:19:03] 2025-10-13 03:19:03,738 [wrapper] Test setup, not cleaning
[2025-10-12 23:19:03] 2025-10-13 03:19:03,740 [wrapper] apfmon messages muted
[2025-10-12 23:19:03] 2025-10-13 03:19:03,742 [wrapper] ==== wrapper stdout END ====
[2025-10-12 23:19:03] 2025-10-13 03:19:03,744 [wrapper] ==== wrapper stderr END ====
[2025-10-12 23:19:03]  *** Error codes and diagnostics ***
[2025-10-12 23:19:03]     "exeErrorCode": 0,
[2025-10-12 23:19:03]     "exeErrorDiag": "",
[2025-10-12 23:19:03]     "pilotErrorCode": 0,
[2025-10-12 23:19:03]     "pilotErrorDiag": "",
[2025-10-12 23:19:03]  *** Listing of results directory ***
[2025-10-12 23:19:03] total 411292
[2025-10-12 23:19:03] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 16:36 pilot3.tar.gz
[2025-10-12 23:19:03] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 16:47 queuedata.json
[2025-10-12 23:19:03] -rwx------. 1 boincer umatlas     36292 Oct 11 16:47 runpilot2-wrapper.sh
[2025-10-12 23:19:03] -rw-r--r--. 1 boincer umatlas       100 Oct 12 22:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 23:19:03] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 22:51 run_atlas
[2025-10-12 23:19:03] -rw-r--r--. 1 boincer umatlas       105 Oct 12 22:51 job.xml
[2025-10-12 23:19:03] -rw-r--r--. 2 boincer umatlas 219580867 Oct 12 22:51 EVNT.46676267._001175.pool.root.1
[2025-10-12 23:19:03] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 22:51 start_atlas.sh
[2025-10-12 23:19:03] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 22:51 shared
[2025-10-12 23:19:03] -rw-r--r--. 2 boincer umatlas    569688 Oct 12 22:51 input.tar.gz
[2025-10-12 23:19:03] -rw-r--r--. 1 boincer umatlas         0 Oct 12 22:51 boinc_lockfile
[2025-10-12 23:19:03] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 22:51 pandaJob.out
[2025-10-12 23:19:03] -rw-------. 1 boincer umatlas    974373 Oct 12 22:51 agis_schedconf.cvmfs.json
[2025-10-12 23:19:03] -rw-------. 1 boincer umatlas   1560580 Oct 12 22:51 agis_ddmendpoints.agis.ALL.json
[2025-10-12 23:19:03] drwx------. 5 boincer umatlas      4096 Oct 12 22:51 pilot3
[2025-10-12 23:19:03] -rw-r--r--. 1 boincer umatlas      7164 Oct 12 23:13 init_data.xml
[2025-10-12 23:19:03] -rw-------. 1 boincer umatlas 196450762 Oct 12 23:17 HITS.46676269._064770.pool.root.1
[2025-10-12 23:19:03] -rw-r--r--. 1 boincer umatlas       529 Oct 12 23:17 boinc_task_state.xml
[2025-10-12 23:19:03] -rw-------. 1 boincer umatlas      1042 Oct 12 23:18 memory_monitor_summary.json
[2025-10-12 23:19:03] -rw-------. 1 boincer umatlas    351663 Oct 12 23:18 log.46676269._064770.job.log.tgz.1
[2025-10-12 23:19:03] -rw-------. 1 boincer umatlas      7774 Oct 12 23:18 heartbeat.json
[2025-10-12 23:19:03] -rw-------. 1 boincer umatlas        95 Oct 12 23:18 pilot_heartbeat.json
[2025-10-12 23:19:03] -rw-r--r--. 1 boincer umatlas        27 Oct 12 23:19 wrapper_checkpoint.txt
[2025-10-12 23:19:03] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 23:19 boinc_mmap_file
[2025-10-12 23:19:03] -rw-------. 1 boincer umatlas      4823 Oct 12 23:19 pilotlog.txt
[2025-10-12 23:19:03] -rw-------. 1 boincer umatlas    266228 Oct 12 23:19 log.46676269._064770.job.log.1
[2025-10-12 23:19:03] -rw-------. 1 boincer umatlas       357 Oct 12 23:19 output.list
[2025-10-12 23:19:03] -rw-r--r--. 1 boincer umatlas       620 Oct 12 23:19 runtime_log
[2025-10-12 23:19:03] -rw-------. 1 boincer umatlas    634880 Oct 12 23:19 result.tar.gz
[2025-10-12 23:19:03] -rw-r--r--. 1 boincer umatlas      8695 Oct 12 23:19 runtime_log.err
[2025-10-12 23:19:03] -rw-------. 1 boincer umatlas       649 Oct 12 23:19 4TtNDmEgvR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmIahNDmvUcoVn.diag
[2025-10-12 23:19:03] -rw-r--r--. 1 boincer umatlas     21950 Oct 12 23:19 stderr.txt
[2025-10-12 23:19:03] HITS file was successfully produced:
[2025-10-12 23:19:03] -rw-------. 1 boincer umatlas 196450762 Oct 12 23:17 shared/HITS.pool.root.1
[2025-10-12 23:19:03]  *** Contents of shared directory: ***
[2025-10-12 23:19:03] total 407488
[2025-10-12 23:19:03] -rw-r--r--. 2 boincer umatlas 219580867 Oct 12 22:51 ATLAS.root_0
[2025-10-12 23:19:03] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 22:51 start_atlas.sh
[2025-10-12 23:19:03] -rw-r--r--. 2 boincer umatlas    569688 Oct 12 22:51 input.tar.gz
[2025-10-12 23:19:03] -rw-------. 1 boincer umatlas 196450762 Oct 12 23:17 HITS.pool.root.1
[2025-10-12 23:19:03] -rw-------. 1 boincer umatlas    634880 Oct 12 23:19 result.tar.gz
23:19:05 (644281): run_atlas exited; CPU time 16403.681850
23:19:05 (644281): called boinc_finish(0)

</stderr_txt>
]]>

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