Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:42:57 (2856452): wrapper (7.7.26015): starting
22:42:57 (2856452): wrapper: running run_atlas (--nthreads 9)
[2025-10-12 22:42:57] Arguments: --nthreads 9
[2025-10-12 22:42:57] Threads: 9
[2025-10-12 22:42:57] Checking for CVMFS
[2025-10-12 22:42:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 22:42:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 22:42:58] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 22:42:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 22:42:59] 2.13.2.0 3269412 36581 379064 151645 2 509 39846196 40960001 34215 16776704 0 472748506 99.849 185511374 36760 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 22:42:59] CVMFS is ok
[2025-10-12 22:42:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 22:42:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 22:42:59] Further information can be found at the LHC@home message board.
[2025-10-12 22:42:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 22:42:59] Checking for apptainer binary...
[2025-10-12 22:42:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 22:42:59] Running /usr/bin/apptainer --version
[2025-10-12 22:42:59] apptainer version 1.4.3-1.el9
[2025-10-12 22:42:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 22:42:59] c8-16-2.aglt2.org
[2025-10-12 22:42:59] apptainer works
[2025-10-12 22:42:59] Set ATHENA_PROC_NUMBER=9
[2025-10-12 22:42:59] Set ATHENA_CORE_NUMBER=9
[2025-10-12 22:42:59] Starting ATLAS job with PandaID=6840714449
[2025-10-12 22:42:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 23:40:57]  *** The last 200 lines of the pilot log: ***
[2025-10-12 23:40:57]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/67/ec/log.46676269._087845.job.log.tgz.1
[2025-10-12 23:40:57]  workdir=None
[2025-10-12 23:40:57] ]
[2025-10-12 23:40:57] 2025-10-13 03:39:42,390 | INFO     | transferring file log.46676269._087845.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6840714449/log.46676269._087845.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 23:40:57] 2025-10-13 03:39:42,390 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6840714449/log.46676269._087845.job.log.tgz.1 /tmp/boinchome/slots/1/log.46676269._087845.job
[2025-10-12 23:40:57] 2025-10-13 03:39:42,416 | INFO     | adding to output.list: log.46676269._087845.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/67/ec/log.46676269._087845.job.log.tg
[2025-10-12 23:40:57] 2025-10-13 03:39:42,416 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 23:40:57] 2025-10-13 03:39:42,416 | INFO     | summary of transferred files:
[2025-10-12 23:40:57] 2025-10-13 03:39:42,416 | INFO     |  -- lfn=log.46676269._087845.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 23:40:57] 2025-10-13 03:39:42,416 | INFO     | stage-out finished correctly
[2025-10-12 23:40:57] 2025-10-13 03:39:43,551 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 23:40:57] 2025-10-13 03:39:43,605 | INFO     | job 6840714449 has state=finished
[2025-10-12 23:40:57] 2025-10-13 03:39:43,605 | INFO     | preparing for final server update for job 6840714449 in state='finished'
[2025-10-12 23:40:57] 2025-10-13 03:39:43,605 | INFO     | this job has now completed (state=finished)
[2025-10-12 23:40:57] 2025-10-13 03:39:43,605 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 23:40:57] 2025-10-13 03:39:43,605 | INFO     | log transfer has been attempted: DONE
[2025-10-12 23:40:57] 2025-10-13 03:39:43,605 | INFO     | job 6840714449 has finished - writing final server update
[2025-10-12 23:40:57] 2025-10-13 03:39:43,606 | INFO     | total number of processed events: 400 (read)
[2025-10-12 23:40:57] 2025-10-13 03:39:43,606 | INFO     | executing command: lscpu
[2025-10-12 23:40:57] 2025-10-13 03:39:43,670 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 23:40:57] 2025-10-13 03:39:44,113 | INFO     | monitor loop #234: job 0:6840714449 is in state 'finished'
[2025-10-12 23:40:57] 2025-10-13 03:39:44,113 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 23:40:57] 2025-10-13 03:39:44,157 | INFO     | time since job start (3358s) is within the limit (172800.0s)
[2025-10-12 23:40:57] 2025-10-13 03:39:44,157 | INFO     | 3362s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-12 23:40:57] 2025-10-13 03:39:46,163 | INFO     | time since job start (3360s) is within the limit (172800.0s)
[2025-10-12 23:40:57] 2025-10-13 03:39:46,620 | INFO     | monitor loop #235: job 0:6840714449 is in state 'finished'
[2025-10-12 23:40:57] 2025-10-13 03:39:46,620 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 23:40:57] 2025-10-13 03:39:47,879 | INFO     | PID=2863712 has CPU usage=11.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-12 23:40:57] 2025-10-13 03:39:47,879 | INFO     | .. there are 53 such processes running
[2025-10-12 23:40:57] 2025-10-13 03:39:48,880 | INFO     | time since job start (3362s) is within the limit (172800.0s)
[2025-10-12 23:40:57] 2025-10-13 03:39:49,125 | INFO     | monitor loop #236: job 0:6840714449 is in state 'finished'
[2025-10-12 23:40:57] 2025-10-13 03:39:49,125 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 23:40:57] 2025-10-13 03:39:50,887 | INFO     | time since job start (3364s) is within the limit (172800.0s)
[2025-10-12 23:40:57] 2025-10-13 03:39:51,629 | INFO     | monitor loop #237: job 0:6840714449 is in state 'finished'
[2025-10-12 23:40:57] 2025-10-13 03:39:51,629 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 23:40:57] 2025-10-13 03:39:52,516 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 23:40:57] 2025-10-13 03:39:52,521 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.9898437499974
[2025-10-12 23:40:57] 2025-10-13 03:39:52,533 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6840714449/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 23:40:57] 2025-10-13 03:39:52,534 | INFO     | extracted standard info from prmon json
[2025-10-12 23:40:57] 2025-10-13 03:39:52,534 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 23:40:57] 2025-10-13 03:39:52,534 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 23:40:57] 2025-10-13 03:39:52,534 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 23:40:57] 2025-10-13 03:39:52,534 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 23:40:57] 2025-10-13 03:39:52,535 | INFO     | fitting pss+swap vs Time
[2025-10-12 23:40:57] 2025-10-13 03:39:52,535 | INFO     | sum of square deviations: 32179208.0
[2025-10-12 23:40:57] 2025-10-13 03:39:52,535 | INFO     | sum of deviations: 55997206.999999985
[2025-10-12 23:40:57] 2025-10-13 03:39:52,535 | INFO     | mean x: 1760325223.0
[2025-10-12 23:40:57] 2025-10-13 03:39:52,535 | INFO     | mean y: 2227684.6170212766
[2025-10-12 23:40:57] 2025-10-13 03:39:52,535 | INFO     | -- intersect: -3061032787.78653
[2025-10-12 23:40:57] 2025-10-13 03:39:52,535 | INFO     | intersect: -3061032787.78653
[2025-10-12 23:40:57] 2025-10-13 03:39:52,535 | INFO     | chi2: 0.01543364525096218
[2025-10-12 23:40:57] 2025-10-13 03:39:52,536 | INFO     | -- intersect: -3061032787.78653
[2025-10-12 23:40:57] 2025-10-13 03:39:52,536 | INFO     | current memory leak: 1.74 B/s (using 47 data points, chi2=0.02)
[2025-10-12 23:40:57] 2025-10-13 03:39:52,536 | INFO     | could have reported an average CPU frequency of 3799 MHz (5 samples)
[2025-10-12 23:40:57] 2025-10-13 03:39:52,536 | INFO     | ..............................
[2025-10-12 23:40:57] 2025-10-13 03:39:52,536 | INFO     | . Timing measurements:
[2025-10-12 23:40:57] 2025-10-13 03:39:52,536 | INFO     | . get job = 0 s
[2025-10-12 23:40:57] 2025-10-13 03:39:52,536 | INFO     | . initial setup = 4 s
[2025-10-12 23:40:57] 2025-10-13 03:39:52,536 | INFO     | . payload setup = 29 s
[2025-10-12 23:40:57] 2025-10-13 03:39:52,536 | INFO     | . stage-in = 0 s
[2025-10-12 23:40:57] 2025-10-13 03:39:52,536 | INFO     | . payload execution = 3281 s
[2025-10-12 23:40:57] 2025-10-13 03:39:52,536 | INFO     | . stage-out = 0 s
[2025-10-12 23:40:57] 2025-10-13 03:39:52,536 | INFO     | . log creation = 0 s
[2025-10-12 23:40:57] 2025-10-13 03:39:52,536 | INFO     | ..............................
[2025-10-12 23:40:57] 2025-10-13 03:39:52,594 | INFO     | 
[2025-10-12 23:40:57] 2025-10-13 03:39:52,594 | INFO     | job summary report
[2025-10-12 23:40:57] 2025-10-13 03:39:52,595 | INFO     | --------------------------------------------------
[2025-10-12 23:40:57] 2025-10-13 03:39:52,595 | INFO     | PanDA job id: 6840714449
[2025-10-12 23:40:57] 2025-10-13 03:39:52,595 | INFO     | task id: 46676269
[2025-10-12 23:40:57] 2025-10-13 03:39:52,595 | INFO     | errors: (none)
[2025-10-12 23:40:57] 2025-10-13 03:39:52,595 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 23:40:57] 2025-10-13 03:39:52,595 | INFO     | pilot state: finished 
[2025-10-12 23:40:57] 2025-10-13 03:39:52,595 | INFO     | transexitcode: 0
[2025-10-12 23:40:57] 2025-10-13 03:39:52,595 | INFO     | exeerrorcode: 0
[2025-10-12 23:40:57] 2025-10-13 03:39:52,595 | INFO     | exeerrordiag: 
[2025-10-12 23:40:57] 2025-10-13 03:39:52,595 | INFO     | exitcode: 0
[2025-10-12 23:40:57] 2025-10-13 03:39:52,596 | INFO     | exitmsg: OK
[2025-10-12 23:40:57] 2025-10-13 03:39:52,596 | INFO     | cpuconsumptiontime: 22156 s
[2025-10-12 23:40:57] 2025-10-13 03:39:52,596 | INFO     | nevents: 400
[2025-10-12 23:40:57] 2025-10-13 03:39:52,596 | INFO     | neventsw: 0
[2025-10-12 23:40:57] 2025-10-13 03:39:52,596 | INFO     | pid: 2872973
[2025-10-12 23:40:57] 2025-10-13 03:39:52,596 | INFO     | pgrp: 2872973
[2025-10-12 23:40:57] 2025-10-13 03:39:52,596 | INFO     | corecount: 9
[2025-10-12 23:40:57] 2025-10-13 03:39:52,596 | INFO     | event service: False
[2025-10-12 23:40:57] 2025-10-13 03:39:52,596 | INFO     | sizes: {0: 2348029, 1: 2348885, 12: 2348885, 21: 2349175, 22: 2349203, 3315: 2374949, 3316: 2383947, 3317: 2384003, 3326: 2384229}
[2025-10-12 23:40:57] 2025-10-13 03:39:52,596 | INFO     | --------------------------------------------------
[2025-10-12 23:40:57] 2025-10-13 03:39:52,596 | INFO     | 
[2025-10-12 23:40:57] 2025-10-13 03:39:52,596 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-12 23:40:57] 2025-10-13 03:39:52,623 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 23:40:57] 2025-10-13 03:39:52,623 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 23:40:57] 2025-10-13 03:39:52,623 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 23:40:57] 2025-10-13 03:39:52,623 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 23:40:57] 2025-10-13 03:39:52,623 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 23:40:57] 2025-10-13 03:39:52,623 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 23:40:57] 2025-10-13 03:39:52,623 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 23:40:57] 2025-10-13 03:39:52,623 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 23:40:57] 2025-10-13 03:39:52,623 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 23:40:57] 2025-10-13 03:39:52,623 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 23:40:57] 2025-10-13 03:39:52,623 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 23:40:57] 2025-10-13 03:39:52,623 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 23:40:57] 2025-10-13 03:39:52,624 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 23:40:57] 2025-10-13 03:39:52,624 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 23:40:57] 2025-10-13 03:39:52,624 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 23:40:57] 2025-10-13 03:39:52,624 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 23:40:57] 2025-10-13 03:39:52,624 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 23:40:57] 2025-10-13 03:39:52,624 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 23:40:57] 2025-10-13 03:39:52,624 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 23:40:57] 2025-10-13 03:39:52,624 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 23:40:57] 2025-10-13 03:39:52,624 | INFO     | job 6840714449 has completed (purged errors)
[2025-10-12 23:40:57] 2025-10-13 03:39:52,624 | INFO     | overall cleanup function is called
[2025-10-12 23:40:57] 2025-10-13 03:39:53,632 | INFO     | --- collectZombieJob: --- 10, [2872973]
[2025-10-12 23:40:57] 2025-10-13 03:39:53,632 | INFO     | zombie collector waiting for pid 2872973
[2025-10-12 23:40:57] 2025-10-13 03:39:53,632 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 23:40:57] 2025-10-13 03:39:53,632 | INFO     | collected zombie processes
[2025-10-12 23:40:57] 2025-10-13 03:39:53,632 | INFO     | will attempt to kill all subprocesses of pid=2872973
[2025-10-12 23:40:57] 2025-10-13 03:39:54,248 | INFO     | process IDs to be killed: [2872973] (in reverse order)
[2025-10-12 23:40:57] 2025-10-13 03:39:54,485 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 23:40:57] 2025-10-13 03:39:54,485 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 23:40:57] 2025-10-13 03:39:54,516 | INFO     | did not find any defunct processes belonging to 2872973
[2025-10-12 23:40:57] 2025-10-13 03:39:54,544 | INFO     | did not find any defunct processes belonging to 2872973
[2025-10-12 23:40:57] 2025-10-13 03:39:54,544 | INFO     | ready for new job
[2025-10-12 23:40:57] 2025-10-13 03:39:54,544 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 23:40:57] 2025-10-13 03:39:54,545 | INFO     | ***************************************
[2025-10-12 23:40:57] 2025-10-13 03:39:54,545 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 23:40:57] 2025-10-13 03:39:54,545 | INFO     | ***************************************
[2025-10-12 23:40:57] 2025-10-13 03:39:54,545 | INFO     | 
[2025-10-12 23:40:57] 2025-10-13 03:39:54,569 | INFO     | architecture information:
[2025-10-12 23:40:57] 2025-10-13 03:39:54,569 | INFO     | executing command: cat /etc/os-release
[2025-10-12 23:40:57] 2025-10-13 03:39:54,590 | INFO     | cat /etc/os-release:
[2025-10-12 23:40:57] NAME="CentOS Linux"
[2025-10-12 23:40:57] VERSION="7 (Core)"
[2025-10-12 23:40:57] ID="centos"
[2025-10-12 23:40:57] ID_LIKE="rhel fedora"
[2025-10-12 23:40:57] VERSION_ID="7"
[2025-10-12 23:40:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 23:40:57] ANSI_COLOR="0;31"
[2025-10-12 23:40:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 23:40:57] HOME_URL="https://www.centos.org/"
[2025-10-12 23:40:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 23:40:57] 
[2025-10-12 23:40:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 23:40:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 23:40:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 23:40:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 23:40:57] 
[2025-10-12 23:40:57] 2025-10-13 03:39:54,590 | INFO     | ***************************************
[2025-10-12 23:40:57] 2025-10-13 03:39:55,093 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-12 23:40:57] 2025-10-13 03:39:55,108 | INFO     | sufficient remaining disk space (166669058048 B)
[2025-10-12 23:40:57] 2025-10-13 03:39:55,109 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 23:40:57] 2025-10-13 03:39:55,109 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 23:40:57] 2025-10-13 03:39:55,109 | INFO     | update_server=False
[2025-10-12 23:40:57] 2025-10-13 03:39:55,109 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 23:40:57] 2025-10-13 03:39:55,109 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 23:40:57] 2025-10-13 03:39:55,138 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:40:57] 2025-10-13 03:39:55,138 | INFO     | aborting loop
[2025-10-12 23:40:57] 2025-10-13 03:39:55,507 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 23:40:57] 2025-10-13 03:39:55,689 | INFO     | all data control threads have been joined
[2025-10-12 23:40:57] 2025-10-13 03:39:55,797 | INFO     | all payload control threads have been joined
[2025-10-12 23:40:57] 2025-10-13 03:39:56,115 | INFO     | [job] retrieve thread has finished
[2025-10-12 23:40:57] 2025-10-13 03:39:56,126 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 23:40:57] 2025-10-13 03:39:56,144 | INFO     | [job] job monitor thread has finished
[2025-10-12 23:40:57] 2025-10-13 03:39:56,648 | INFO     | all job control threads have been joined
[2025-10-12 23:40:57] 2025-10-13 03:39:56,695 | INFO     | [data] control thread has finished
[2025-10-12 23:40:57] 2025-10-13 03:39:56,802 | INFO     | [payload] control thread has finished
[2025-10-12 23:40:57] 2025-10-13 03:39:57,119 | INFO     | [payload] validate_post thread has finished
[2025-10-12 23:40:57] 2025-10-13 03:39:57,208 | INFO     | [data] copytool_in thread has finished
[2025-10-12 23:40:57] 2025-10-13 03:39:57,255 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 23:40:57] 2025-10-13 03:39:57,337 | INFO     | [payload] failed_post thread has finished
[2025-10-12 23:40:57] 2025-10-13 03:39:57,390 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 23:40:57] 2025-10-13 03:39:57,425 | INFO     | [job] validate thread has finished
[2025-10-12 23:40:57] 2025-10-13 03:39:57,525 | INFO     | [data] copytool_out thread has finished
[2025-10-12 23:40:57] 2025-10-13 03:39:57,608 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:40:57] 2025-10-13 03:39:57,654 | INFO     | [job] control thread has finished
[2025-10-12 23:40:57] 2025-10-13 03:39:58,613 | INFO     | [job] queue monitor thread has finished
[2025-10-12 23:40:57] 2025-10-13 03:39:59,120 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 23:40:57] 2025-10-13 03:40:05,546 | INFO     | job.realtimelogging is not enabled
[2025-10-12 23:40:57] 2025-10-13 03:40:06,553 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 23:40:57] 2025-10-13 03:40:24,786 | INFO     | PID=2863712 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 23:40:57] 2025-10-13 03:40:24,786 | INFO     | .. there are 53 such processes running
[2025-10-12 23:40:57] 2025-10-13 03:40:24,786 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 23:40:57] 2025-10-13 03:40:24,786 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 23:40:57] 2025-10-13 03:40:24,786 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 23:40:57] 2025-10-13 03:40:51,376 | INFO     | [monitor] cgroup control has ended
[2025-10-12 23:40:57] 2025-10-13 03:40:51,923 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140032029783872)>', '<ExcThread(monitor, started 140031519856384)>']
[2025-10-12 23:40:57] 2025-10-13 03:40:51,970 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 23:40:57] 2025-10-13 03:40:51,970 | INFO     | [monitor] control thread has ended
[2025-10-12 23:40:57] 2025-10-13 03:40:56,948 | INFO     | all workflow threads have been joined
[2025-10-12 23:40:57] 2025-10-13 03:40:56,948 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 23:40:57] 2025-10-13 03:40:56,948 | INFO     | traces error code: 0
[2025-10-12 23:40:57] 2025-10-13 03:40:56,948 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 23:40:57] 2025-10-13 03:40:57,080 [wrapper] ==== pilot stdout END ====
[2025-10-12 23:40:57] 2025-10-13 03:40:57,107 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 23:40:57] 2025-10-13 03:40:57,110 [wrapper] pilotpid: 2863712
[2025-10-12 23:40:57] 2025-10-13 03:40:57,121 [wrapper] Pilot exit status: 0
[2025-10-12 23:40:57] 2025-10-13 03:40:57,152 [wrapper] pandaids: 6840714449
[2025-10-12 23:40:57] 2025-10-13 03:40:57,291 [wrapper] cleanup supervisor_pilot 3236235 2863713
[2025-10-12 23:40:57] 2025-10-13 03:40:57,293 [wrapper] Test setup, not cleaning
[2025-10-12 23:40:57] 2025-10-13 03:40:57,296 [wrapper] apfmon messages muted
[2025-10-12 23:40:57] 2025-10-13 03:40:57,298 [wrapper] ==== wrapper stdout END ====
[2025-10-12 23:40:57] 2025-10-13 03:40:57,300 [wrapper] ==== wrapper stderr END ====
[2025-10-12 23:40:57]  *** Error codes and diagnostics ***
[2025-10-12 23:40:57]     "exeErrorCode": 0,
[2025-10-12 23:40:57]     "exeErrorDiag": "",
[2025-10-12 23:40:57]     "pilotErrorCode": 0,
[2025-10-12 23:40:57]     "pilotErrorDiag": "",
[2025-10-12 23:40:57]  *** Listing of results directory ***
[2025-10-12 23:40:57] total 408580
[2025-10-12 23:40:57] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 15:28 pilot3.tar.gz
[2025-10-12 23:40:57] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 15:43 queuedata.json
[2025-10-12 23:40:57] -rwx------. 1 boincer umatlas     36292 Oct 12 15:43 runpilot2-wrapper.sh
[2025-10-12 23:40:57] -rw-r--r--. 1 boincer umatlas       100 Oct 12 22:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 23:40:57] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 22:42 run_atlas
[2025-10-12 23:40:57] -rw-r--r--. 1 boincer umatlas       105 Oct 12 22:42 job.xml
[2025-10-12 23:40:57] -rw-r--r--. 2 boincer umatlas 220212047 Oct 12 22:42 EVNT.46676267._004468.pool.root.1
[2025-10-12 23:40:57] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 22:42 start_atlas.sh
[2025-10-12 23:40:57] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 22:42 shared
[2025-10-12 23:40:57] -rw-r--r--. 2 boincer umatlas    569681 Oct 12 22:42 input.tar.gz
[2025-10-12 23:40:57] -rw-r--r--. 1 boincer umatlas         0 Oct 12 22:42 boinc_lockfile
[2025-10-12 23:40:57] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 22:42 pandaJob.out
[2025-10-12 23:40:57] -rw-------. 1 boincer umatlas    974373 Oct 12 22:43 agis_schedconf.cvmfs.json
[2025-10-12 23:40:57] -rw-------. 1 boincer umatlas   1560580 Oct 12 22:43 agis_ddmendpoints.agis.ALL.json
[2025-10-12 23:40:57] drwx------. 5 boincer umatlas      4096 Oct 12 22:43 pilot3
[2025-10-12 23:40:57] -rw-r--r--. 1 boincer umatlas      7161 Oct 12 23:38 init_data.xml
[2025-10-12 23:40:57] -rw-------. 1 boincer umatlas 192650545 Oct 12 23:39 HITS.46676269._087845.pool.root.1
[2025-10-12 23:40:57] -rw-r--r--. 1 boincer umatlas       529 Oct 12 23:39 boinc_task_state.xml
[2025-10-12 23:40:57] -rw-------. 1 boincer umatlas      1035 Oct 12 23:39 memory_monitor_summary.json
[2025-10-12 23:40:57] -rw-------. 1 boincer umatlas    323904 Oct 12 23:39 log.46676269._087845.job.log.tgz.1
[2025-10-12 23:40:57] -rw-------. 1 boincer umatlas        95 Oct 12 23:39 pilot_heartbeat.json
[2025-10-12 23:40:57] -rw-------. 1 boincer umatlas      7776 Oct 12 23:39 heartbeat.json
[2025-10-12 23:40:57] -rw-------. 1 boincer umatlas      4897 Oct 12 23:40 pilotlog.txt
[2025-10-12 23:40:57] -rw-r--r--. 1 boincer umatlas        27 Oct 12 23:40 wrapper_checkpoint.txt
[2025-10-12 23:40:57] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 23:40 boinc_mmap_file
[2025-10-12 23:40:57] -rw-------. 1 boincer umatlas    484811 Oct 12 23:40 log.46676269._087845.job.log.1
[2025-10-12 23:40:57] -rw-------. 1 boincer umatlas       357 Oct 12 23:40 output.list
[2025-10-12 23:40:57] -rw-r--r--. 1 boincer umatlas       620 Oct 12 23:40 runtime_log
[2025-10-12 23:40:57] -rw-------. 1 boincer umatlas    829440 Oct 12 23:40 result.tar.gz
[2025-10-12 23:40:57] -rw-r--r--. 1 boincer umatlas      8698 Oct 12 23:40 runtime_log.err
[2025-10-12 23:40:57] -rw-------. 1 boincer umatlas       651 Oct 12 23:40 QVdNDmCAHS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmbJlNDmT2SJDo.diag
[2025-10-12 23:40:57] -rw-r--r--. 1 boincer umatlas     22393 Oct 12 23:40 stderr.txt
[2025-10-12 23:40:57] HITS file was successfully produced:
[2025-10-12 23:40:57] -rw-------. 1 boincer umatlas 192650545 Oct 12 23:39 shared/HITS.pool.root.1
[2025-10-12 23:40:57]  *** Contents of shared directory: ***
[2025-10-12 23:40:57] total 404584
[2025-10-12 23:40:57] -rw-r--r--. 2 boincer umatlas 220212047 Oct 12 22:42 ATLAS.root_0
[2025-10-12 23:40:57] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 22:42 start_atlas.sh
[2025-10-12 23:40:57] -rw-r--r--. 2 boincer umatlas    569681 Oct 12 22:42 input.tar.gz
[2025-10-12 23:40:57] -rw-------. 1 boincer umatlas 192650545 Oct 12 23:39 HITS.pool.root.1
[2025-10-12 23:40:57] -rw-------. 1 boincer umatlas    829440 Oct 12 23:40 result.tar.gz
23:40:59 (2856452): run_atlas exited; CPU time 22288.513397
23:40:59 (2856452): called boinc_finish(0)

</stderr_txt>
]]>

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