Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:57:33 (4050487): wrapper (7.7.26015): starting
14:57:33 (4050487): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 14:57:33] Arguments: --nthreads 4
[2025-10-13 14:57:33] Threads: 4
[2025-10-13 14:57:33] Checking for CVMFS
[2025-10-13 14:57:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 14:57:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 14:57:33] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 14:57:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 14:57:33] 2.9.2.0 1822434 5672 96788 151661 0 57 22616725 36864000 0 130560 0 5857730 99.993 196787 746 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 14:57:33] CVMFS is ok
[2025-10-13 14:57:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 14:57:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 14:57:33] Further information can be found at the LHC@home message board.
[2025-10-13 14:57:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 14:57:33] Checking for apptainer binary...
[2025-10-13 14:57:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 14:57:33] Running /usr/bin/apptainer --version
[2025-10-13 14:57:33] apptainer version 1.4.1-1.1
[2025-10-13 14:57:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 14:57:33] thA315b
[2025-10-13 14:57:33] apptainer works
[2025-10-13 14:57:33] Set ATHENA_PROC_NUMBER=4
[2025-10-13 14:57:33] Set ATHENA_CORE_NUMBER=4
[2025-10-13 14:57:33] Starting ATLAS job with PandaID=6840849892
[2025-10-13 14:57:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 16:02:05]  *** The last 200 lines of the pilot log: ***
[2025-10-13 16:02:05] 2025-10-13 14:01:34,898 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 16:02:05] 2025-10-13 14:01:34,898 | INFO     | collected zombie processes
[2025-10-13 16:02:05] 2025-10-13 14:01:34,898 | INFO     | will attempt to kill all subprocesses of pid=4060828
[2025-10-13 16:02:05] 2025-10-13 14:01:34,943 | INFO     | process IDs to be killed: [4060828] (in reverse order)
[2025-10-13 16:02:05] 2025-10-13 14:01:34,969 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 16:02:05] 2025-10-13 14:01:34,970 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 16:02:05] 2025-10-13 14:01:34,971 | INFO     | did not find any defunct processes belonging to 4060828
[2025-10-13 16:02:05] 2025-10-13 14:01:34,972 | INFO     | did not find any defunct processes belonging to 4060828
[2025-10-13 16:02:05] 2025-10-13 14:01:34,972 | INFO     | ready for new job
[2025-10-13 16:02:05] 2025-10-13 14:01:34,972 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 16:02:05] 2025-10-13 14:01:34,973 | INFO     | ***************************************
[2025-10-13 16:02:05] 2025-10-13 14:01:34,973 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-13 16:02:05] 2025-10-13 14:01:34,973 | INFO     | ***************************************
[2025-10-13 16:02:05] 2025-10-13 14:01:34,973 | INFO     | 
[2025-10-13 16:02:05] 2025-10-13 14:01:34,973 | INFO     | architecture information:
[2025-10-13 16:02:05] 2025-10-13 14:01:34,973 | INFO     | executing command: cat /etc/os-release
[2025-10-13 16:02:05] 2025-10-13 14:01:34,983 | INFO     | cat /etc/os-release:
[2025-10-13 16:02:05] NAME="CentOS Linux"
[2025-10-13 16:02:05] VERSION="7 (Core)"
[2025-10-13 16:02:05] ID="centos"
[2025-10-13 16:02:05] ID_LIKE="rhel fedora"
[2025-10-13 16:02:05] VERSION_ID="7"
[2025-10-13 16:02:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 16:02:05] ANSI_COLOR="0;31"
[2025-10-13 16:02:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 16:02:05] HOME_URL="https://www.centos.org/"
[2025-10-13 16:02:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 16:02:05] 
[2025-10-13 16:02:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 16:02:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 16:02:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 16:02:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 16:02:05] 
[2025-10-13 16:02:05] 2025-10-13 14:01:34,983 | INFO     | ***************************************
[2025-10-13 16:02:05] 2025-10-13 14:01:35,487 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 16:02:05] 2025-10-13 14:01:35,500 | INFO     | sufficient remaining disk space (337574363136 B)
[2025-10-13 16:02:05] 2025-10-13 14:01:35,500 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 16:02:05] 2025-10-13 14:01:35,500 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 16:02:05] 2025-10-13 14:01:35,501 | INFO     | update_server=False
[2025-10-13 16:02:05] 2025-10-13 14:01:35,501 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 16:02:05] 2025-10-13 14:01:35,501 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 16:02:05] 2025-10-13 14:01:35,501 | INFO     | will abort loop
[2025-10-13 16:02:05] 2025-10-13 14:01:35,501 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 16:02:05] 2025-10-13 14:01:35,632 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 16:02:05] 2025-10-13 14:01:35,662 | INFO     | all data control threads have been joined
[2025-10-13 16:02:05] 2025-10-13 14:01:36,092 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 16:02:05] 2025-10-13 14:01:36,506 | INFO     | [job] job monitor thread has finished
[2025-10-13 16:02:05] 2025-10-13 14:01:36,507 | INFO     | [job] retrieve thread has finished
[2025-10-13 16:02:05] 2025-10-13 14:01:36,507 | INFO     | [job] queue monitor thread has finished
[2025-10-13 16:02:05] 2025-10-13 14:01:36,668 | INFO     | [data] control thread has finished
[2025-10-13 16:02:05] 2025-10-13 14:01:36,688 | INFO     | [payload] validate_post thread has finished
[2025-10-13 16:02:05] 2025-10-13 14:01:36,783 | INFO     | all payload control threads have been joined
[2025-10-13 16:02:05] 2025-10-13 14:01:36,935 | INFO     | [payload] failed_post thread has finished
[2025-10-13 16:02:05] 2025-10-13 14:01:37,071 | INFO     | all job control threads have been joined
[2025-10-13 16:02:05] 2025-10-13 14:01:37,119 | INFO     | [data] copytool_in thread has finished
[2025-10-13 16:02:05] 2025-10-13 14:01:37,386 | INFO     | [job] validate thread has finished
[2025-10-13 16:02:05] 2025-10-13 14:01:37,485 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 16:02:05] 2025-10-13 14:01:37,500 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 16:02:05] 2025-10-13 14:01:37,662 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 16:02:05] 2025-10-13 14:01:37,789 | INFO     | [payload] control thread has finished
[2025-10-13 16:02:05] 2025-10-13 14:01:38,077 | INFO     | [job] control thread has finished
[2025-10-13 16:02:05] 2025-10-13 14:01:38,098 | INFO     | [data] copytool_out thread has finished
[2025-10-13 16:02:05] 2025-10-13 14:01:39,637 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 16:02:05] 2025-10-13 14:01:43,849 | INFO     | [monitor] cgroup control has ended
[2025-10-13 16:02:05] 2025-10-13 14:01:46,146 | INFO     | job.realtimelogging is not enabled
[2025-10-13 16:02:05] 2025-10-13 14:01:47,152 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 16:02:05] 2025-10-13 14:01:47,965 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140454410897216)>', '<ExcThread(monitor, started 140454037264128)>']
[2025-10-13 16:02:05] 2025-10-13 14:01:52,990 | INFO     | all workflow threads have been joined
[2025-10-13 16:02:05] 2025-10-13 14:01:52,991 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 16:02:05] 2025-10-13 14:01:52,991 | INFO     | traces error code: 0
[2025-10-13 16:02:05] 2025-10-13 14:01:52,991 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 16:02:05] 2025-10-13 14:02:05,629 | INFO     | PID=4054267 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 16:02:05] 2025-10-13 14:02:05,629 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 16:02:05] 2025-10-13 14:02:05,629 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 16:02:05] 2025-10-13 14:02:05,629 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 16:02:05] 2025-10-13 14:02:05,629 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 16:02:05] 2025-10-13 14:02:05,629 | INFO     | [monitor] control thread has ended
[2025-10-13 16:02:05] 2025-10-13 14:02:05,680 [wrapper] ==== pilot stdout END ====
[2025-10-13 16:02:05] 2025-10-13 14:02:05,683 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 16:02:05] 2025-10-13 14:02:05,685 [wrapper] pilotpid: 4054267
[2025-10-13 16:02:05] 2025-10-13 14:02:05,688 [wrapper] Pilot exit status: 0
[2025-10-13 16:02:05] 2025-10-13 14:02:05,696 [wrapper] pandaids: 6840849892
[2025-10-13 16:02:05] 2025-10-13 14:02:05,714 [wrapper] cleanup supervisor_pilot 4070604 4054268
[2025-10-13 16:02:05] 2025-10-13 14:02:05,716 [wrapper] Test setup, not cleaning
[2025-10-13 16:02:05] 2025-10-13 14:02:05,719 [wrapper] apfmon messages muted
[2025-10-13 16:02:05] 2025-10-13 14:02:05,722 [wrapper] ==== wrapper stdout END ====
[2025-10-13 16:02:05] 2025-10-13 14:02:05,724 [wrapper] ==== wrapper stderr END ====
[2025-10-13 16:02:05]  *** Error codes and diagnostics ***
[2025-10-13 16:02:05]     "exeErrorCode": 0,
[2025-10-13 16:02:05]     "exeErrorDiag": "",
[2025-10-13 16:02:05]     "pilotErrorCode": 0,
[2025-10-13 16:02:05]     "pilotErrorDiag": "",
[2025-10-13 16:02:05]  *** Listing of results directory ***
[2025-10-13 16:02:05] total 420540
[2025-10-13 16:02:05] -rw-r--r-- 1 boinc boinc    563267 Oct  7 09:02 pilot3.tar.gz
[2025-10-13 16:02:05] -rw-r--r-- 1 boinc boinc      5112 Oct 13 00:00 queuedata.json
[2025-10-13 16:02:05] -rwx------ 1 boinc boinc     36292 Oct 13 00:00 runpilot2-wrapper.sh
[2025-10-13 16:02:05] -rw-r--r-- 1 boinc boinc       100 Oct 13 14:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 16:02:05] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 14:57 run_atlas
[2025-10-13 16:02:05] -rw-r--r-- 1 boinc boinc       105 Oct 13 14:57 job.xml
[2025-10-13 16:02:05] -rw-r--r-- 2 boinc boinc 223581089 Oct 13 14:57 EVNT.46676267._004847.pool.root.1
[2025-10-13 16:02:05] -rw-r--r-- 2 boinc boinc    576711 Oct 13 14:57 input.tar.gz
[2025-10-13 16:02:05] -rw-r--r-- 2 boinc boinc     15120 Oct 13 14:57 start_atlas.sh
[2025-10-13 16:02:05] drwxrwx--x 2 boinc boinc      4096 Oct 13 14:57 shared
[2025-10-13 16:02:05] -rw-r--r-- 1 boinc boinc         0 Oct 13 14:57 boinc_setup_complete
[2025-10-13 16:02:05] -rw-r--r-- 1 boinc boinc      6443 Oct 13 14:57 init_data.xml
[2025-10-13 16:02:05] -rw-r--r-- 1 boinc boinc         0 Oct 13 14:57 boinc_lockfile
[2025-10-13 16:02:05] -rw-r--r-- 1 boinc boinc      2550 Oct 13 14:57 pandaJob.out
[2025-10-13 16:02:05] -rw------- 1 boinc boinc    972497 Oct 13 14:57 agis_schedconf.cvmfs.json
[2025-10-13 16:02:05] -rw------- 1 boinc boinc   1560580 Oct 13 14:57 agis_ddmendpoints.agis.ALL.json
[2025-10-13 16:02:05] drwx------ 4 boinc boinc      4096 Oct 13 14:57 pilot3
[2025-10-13 16:02:05] -rw------- 1 boinc boinc 201516394 Oct 13 16:01 HITS.46676269._090484.pool.root.1
[2025-10-13 16:02:05] -rw-r--r-- 1 boinc boinc       529 Oct 13 16:01 boinc_task_state.xml
[2025-10-13 16:02:05] -rw------- 1 boinc boinc      1015 Oct 13 16:01 memory_monitor_summary.json
[2025-10-13 16:02:05] -rw------- 1 boinc boinc    244534 Oct 13 16:01 log.46676269._090484.job.log.tgz.1
[2025-10-13 16:02:05] -rw------- 1 boinc boinc      7750 Oct 13 16:01 heartbeat.json
[2025-10-13 16:02:05] -rw-r--r-- 1 boinc boinc      8192 Oct 13 16:01 boinc_mmap_file
[2025-10-13 16:02:05] -rw-r--r-- 1 boinc boinc        27 Oct 13 16:01 wrapper_checkpoint.txt
[2025-10-13 16:02:05] -rw------- 1 boinc boinc       747 Oct 13 16:02 pilotlog.txt
[2025-10-13 16:02:05] -rw------- 1 boinc boinc        95 Oct 13 16:02 pilot_heartbeat.json
[2025-10-13 16:02:05] -rw------- 1 boinc boinc    573570 Oct 13 16:02 log.46676269._090484.job.log.1
[2025-10-13 16:02:05] -rw------- 1 boinc boinc       357 Oct 13 16:02 output.list
[2025-10-13 16:02:05] -rw-r--r-- 1 boinc boinc       620 Oct 13 16:02 runtime_log
[2025-10-13 16:02:05] -rw------- 1 boinc boinc    839680 Oct 13 16:02 result.tar.gz
[2025-10-13 16:02:05] -rw------- 1 boinc boinc       659 Oct 13 16:02 s6eMDmdIJS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmPmlNDmXly7Zn.diag
[2025-10-13 16:02:05] -rw-r--r-- 1 boinc boinc      8782 Oct 13 16:02 runtime_log.err
[2025-10-13 16:02:05] -rw-r--r-- 1 boinc boinc     10511 Oct 13 16:02 stderr.txt
[2025-10-13 16:02:05] HITS file was successfully produced:
[2025-10-13 16:02:05] -rw------- 1 boinc boinc 201516394 Oct 13 16:01 shared/HITS.pool.root.1
[2025-10-13 16:02:05]  *** Contents of shared directory: ***
[2025-10-13 16:02:05] total 416548
[2025-10-13 16:02:05] -rw-r--r-- 2 boinc boinc 223581089 Oct 13 14:57 ATLAS.root_0
[2025-10-13 16:02:05] -rw-r--r-- 2 boinc boinc    576711 Oct 13 14:57 input.tar.gz
[2025-10-13 16:02:05] -rw-r--r-- 2 boinc boinc     15120 Oct 13 14:57 start_atlas.sh
[2025-10-13 16:02:05] -rw------- 1 boinc boinc 201516394 Oct 13 16:01 HITS.pool.root.1
[2025-10-13 16:02:05] -rw------- 1 boinc boinc    839680 Oct 13 16:02 result.tar.gz
16:02:07 (4050487): run_atlas exited; CPU time 14376.531083
16:02:07 (4050487): called boinc_finish(0)

</stderr_txt>
]]>

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