Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
22:33:15 (14248): wrapper (7.7.26015): starting
22:33:15 (14248): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 22:33:15] Arguments: --nthreads 12
[2025-10-12 22:33:15] Threads: 12
[2025-10-12 22:33:15] Checking for CVMFS
[2025-10-12 22:33:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 22:33:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 22:33:15] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 22:33:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 22:33:16] 2.11.2.0 2925 223727 101744 151645 3 59 16935030 20275200 1 130560 1 110896073 99.984 13328403 12651 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 22:33:16] CVMFS is ok
[2025-10-12 22:33:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 22:33:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 22:33:16] Further information can be found at the LHC@home message board.
[2025-10-12 22:33:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 22:33:16] Checking for apptainer binary...
[2025-10-12 22:33:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 22:33:16] Running /usr/bin/apptainer --version
[2025-10-12 22:33:16] apptainer version 1.3.2-1.el7
[2025-10-12 22:33:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 22:33:17] c-205-9.aglt2.org
[2025-10-12 22:33:17] apptainer works
[2025-10-12 22:33:17] Set ATHENA_PROC_NUMBER=12
[2025-10-12 22:33:17] Set ATHENA_CORE_NUMBER=12
[2025-10-12 22:33:17] Starting ATLAS job with PandaID=6840850905
[2025-10-12 22:33:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 23:47:45]  *** The last 200 lines of the pilot log: ***
[2025-10-12 23:47:45]  scope=mc23_13p6TeV
[2025-10-12 23:47:45]  status=None
[2025-10-12 23:47:45]  status_code=0
[2025-10-12 23:47:45]  storage_token=
[2025-10-12 23:47:45]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6840850905/log.46676269._090853.job.log.tgz.1
[2025-10-12 23:47:45]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/44/e8/log.46676269._090853.job.log.tgz.1
[2025-10-12 23:47:45]  workdir=None
[2025-10-12 23:47:45] ]
[2025-10-12 23:47:45] 2025-10-13 03:46:59,589 | INFO     | transferring file log.46676269._090853.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6840850905/log.46676269._090853.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 23:47:45] 2025-10-13 03:46:59,590 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6840850905/log.46676269._090853.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._090853.job
[2025-10-12 23:47:45] 2025-10-13 03:46:59,613 | INFO     | adding to output.list: log.46676269._090853.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/44/e8/log.46676269._090853.job.log.tg
[2025-10-12 23:47:45] 2025-10-13 03:46:59,614 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 23:47:45] 2025-10-13 03:46:59,614 | INFO     | summary of transferred files:
[2025-10-12 23:47:45] 2025-10-13 03:46:59,614 | INFO     |  -- lfn=log.46676269._090853.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 23:47:45] 2025-10-13 03:46:59,615 | INFO     | stage-out finished correctly
[2025-10-12 23:47:45] 2025-10-13 03:46:59,864 | INFO     | time since job start (4407s) is within the limit (172800.0s)
[2025-10-12 23:47:45] 2025-10-13 03:47:00,993 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 23:47:45] 2025-10-13 03:47:01,846 | WARNING  | process 25282 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 23:47:45] 2025-10-13 03:47:01,846 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840850905/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 23:47:45] 2025-10-13 03:47:01,870 | INFO     | time since job start (4409s) is within the limit (172800.0s)
[2025-10-12 23:47:45] 2025-10-13 03:47:01,936 | INFO     | number of running child processes to parent process 25282: 1
[2025-10-12 23:47:45] 2025-10-13 03:47:01,937 | INFO     | maximum number of monitored processes: 6
[2025-10-12 23:47:45] 2025-10-13 03:47:02,890 | INFO     | job 6840850905 has state=finished
[2025-10-12 23:47:45] 2025-10-13 03:47:02,890 | INFO     | preparing for final server update for job 6840850905 in state='finished'
[2025-10-12 23:47:45] 2025-10-13 03:47:02,904 | INFO     | this job has now completed (state=finished)
[2025-10-12 23:47:45] 2025-10-13 03:47:02,904 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 23:47:45] 2025-10-13 03:47:02,904 | INFO     | log transfer has been attempted: DONE
[2025-10-12 23:47:45] 2025-10-13 03:47:02,905 | INFO     | job 6840850905 has finished - writing final server update
[2025-10-12 23:47:45] 2025-10-13 03:47:02,905 | INFO     | total number of processed events: 400 (read)
[2025-10-12 23:47:45] 2025-10-13 03:47:02,907 | INFO     | executing command: lscpu
[2025-10-12 23:47:45] 2025-10-13 03:47:02,934 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 23:47:45] 2025-10-13 03:47:03,875 | INFO     | time since job start (4411s) is within the limit (172800.0s)
[2025-10-12 23:47:45] 2025-10-13 03:47:04,440 | INFO     | monitor loop #328: job 0:6840850905 is in state 'finished'
[2025-10-12 23:47:45] 2025-10-13 03:47:04,440 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 23:47:45] 2025-10-13 03:47:05,881 | INFO     | time since job start (4413s) is within the limit (172800.0s)
[2025-10-12 23:47:45] 2025-10-13 03:47:06,943 | INFO     | monitor loop #329: job 0:6840850905 is in state 'finished'
[2025-10-12 23:47:45] 2025-10-13 03:47:06,943 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 23:47:45] 2025-10-13 03:47:07,693 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 23:47:45] 2025-10-13 03:47:07,695 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1729.0833333333333
[2025-10-12 23:47:45] 2025-10-13 03:47:07,697 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840850905/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 23:47:45] 2025-10-13 03:47:07,698 | INFO     | extracted standard info from prmon json
[2025-10-12 23:47:45] 2025-10-13 03:47:07,698 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 23:47:45] 2025-10-13 03:47:07,698 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 23:47:45] 2025-10-13 03:47:07,698 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 23:47:45] 2025-10-13 03:47:07,699 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 23:47:45] 2025-10-13 03:47:07,700 | INFO     | fitting pss+swap vs Time
[2025-10-12 23:47:45] 2025-10-13 03:47:07,700 | INFO     | sum of square deviations: 85136480.0
[2025-10-12 23:47:45] 2025-10-13 03:47:07,701 | INFO     | sum of deviations: -6994534987.999999
[2025-10-12 23:47:45] 2025-10-13 03:47:07,701 | INFO     | mean x: 1760325099.0
[2025-10-12 23:47:45] 2025-10-13 03:47:07,701 | INFO     | mean y: 2827293.153846154
[2025-10-12 23:47:45] 2025-10-13 03:47:07,701 | INFO     | -- intersect: 144625385040.55026
[2025-10-12 23:47:45] 2025-10-13 03:47:07,701 | INFO     | intersect: 144625385040.55026
[2025-10-12 23:47:45] 2025-10-13 03:47:07,701 | INFO     | chi2: 0.09438383381746829
[2025-10-12 23:47:45] 2025-10-13 03:47:07,702 | INFO     | -- intersect: 144625385040.55026
[2025-10-12 23:47:45] 2025-10-13 03:47:07,702 | INFO     | current memory leak: -82.16 B/s (using 65 data points, chi2=0.09)
[2025-10-12 23:47:45] 2025-10-13 03:47:07,702 | INFO     | could have reported an average CPU frequency of 2067 MHz (6 samples)
[2025-10-12 23:47:45] 2025-10-13 03:47:07,702 | INFO     | ..............................
[2025-10-12 23:47:45] 2025-10-13 03:47:07,702 | INFO     | . Timing measurements:
[2025-10-12 23:47:45] 2025-10-13 03:47:07,702 | INFO     | . get job = 0 s
[2025-10-12 23:47:45] 2025-10-13 03:47:07,702 | INFO     | . initial setup = 2 s
[2025-10-12 23:47:45] 2025-10-13 03:47:07,703 | INFO     | . payload setup = 7 s
[2025-10-12 23:47:45] 2025-10-13 03:47:07,703 | INFO     | . stage-in = 0 s
[2025-10-12 23:47:45] 2025-10-13 03:47:07,703 | INFO     | . payload execution = 4379 s
[2025-10-12 23:47:45] 2025-10-13 03:47:07,703 | INFO     | . stage-out = 0 s
[2025-10-12 23:47:45] 2025-10-13 03:47:07,703 | INFO     | . log creation = 0 s
[2025-10-12 23:47:45] 2025-10-13 03:47:07,703 | INFO     | ..............................
[2025-10-12 23:47:45] 2025-10-13 03:47:07,788 | INFO     | 
[2025-10-12 23:47:45] 2025-10-13 03:47:07,788 | INFO     | job summary report
[2025-10-12 23:47:45] 2025-10-13 03:47:07,788 | INFO     | --------------------------------------------------
[2025-10-12 23:47:45] 2025-10-13 03:47:07,788 | INFO     | PanDA job id: 6840850905
[2025-10-12 23:47:45] 2025-10-13 03:47:07,788 | INFO     | task id: 46676269
[2025-10-12 23:47:45] 2025-10-13 03:47:07,789 | INFO     | errors: (none)
[2025-10-12 23:47:45] 2025-10-13 03:47:07,789 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 23:47:45] 2025-10-13 03:47:07,789 | INFO     | pilot state: finished 
[2025-10-12 23:47:45] 2025-10-13 03:47:07,789 | INFO     | transexitcode: 0
[2025-10-12 23:47:45] 2025-10-13 03:47:07,789 | INFO     | exeerrorcode: 0
[2025-10-12 23:47:45] 2025-10-13 03:47:07,789 | INFO     | exeerrordiag: 
[2025-10-12 23:47:45] 2025-10-13 03:47:07,790 | INFO     | exitcode: 0
[2025-10-12 23:47:45] 2025-10-13 03:47:07,790 | INFO     | exitmsg: OK
[2025-10-12 23:47:45] 2025-10-13 03:47:07,790 | INFO     | cpuconsumptiontime: 47210 s
[2025-10-12 23:47:45] 2025-10-13 03:47:07,790 | INFO     | nevents: 400
[2025-10-12 23:47:45] 2025-10-13 03:47:07,790 | INFO     | neventsw: 0
[2025-10-12 23:47:45] 2025-10-13 03:47:07,790 | INFO     | pid: 25282
[2025-10-12 23:47:45] 2025-10-13 03:47:07,790 | INFO     | pgrp: 25282
[2025-10-12 23:47:45] 2025-10-13 03:47:07,791 | INFO     | corecount: 12
[2025-10-12 23:47:45] 2025-10-13 03:47:07,791 | INFO     | event service: False
[2025-10-12 23:47:45] 2025-10-13 03:47:07,791 | INFO     | sizes: {0: 2348680, 1: 2348879, 5: 2349141, 11: 2349197, 4390: 2375242, 4391: 2384240, 4392: 2384424, 4399: 2384618}
[2025-10-12 23:47:45] 2025-10-13 03:47:07,791 | INFO     | --------------------------------------------------
[2025-10-12 23:47:45] 2025-10-13 03:47:07,791 | INFO     | 
[2025-10-12 23:47:45] 2025-10-13 03:47:07,792 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 23:47:45] 2025-10-13 03:47:07,816 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 23:47:45] 2025-10-13 03:47:07,817 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 23:47:45] 2025-10-13 03:47:07,817 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 23:47:45] 2025-10-13 03:47:07,817 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 23:47:45] 2025-10-13 03:47:07,817 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 23:47:45] 2025-10-13 03:47:07,817 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 23:47:45] 2025-10-13 03:47:07,818 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 23:47:45] 2025-10-13 03:47:07,818 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 23:47:45] 2025-10-13 03:47:07,818 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 23:47:45] 2025-10-13 03:47:07,818 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 23:47:45] 2025-10-13 03:47:07,818 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 23:47:45] 2025-10-13 03:47:07,818 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 23:47:45] 2025-10-13 03:47:07,819 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 23:47:45] 2025-10-13 03:47:07,819 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 23:47:45] 2025-10-13 03:47:07,819 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 23:47:45] 2025-10-13 03:47:07,819 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 23:47:45] 2025-10-13 03:47:07,819 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 23:47:45] 2025-10-13 03:47:07,819 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 23:47:45] 2025-10-13 03:47:07,819 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 23:47:45] 2025-10-13 03:47:07,819 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 23:47:45] 2025-10-13 03:47:07,820 | INFO     | job 6840850905 has completed (purged errors)
[2025-10-12 23:47:45] 2025-10-13 03:47:07,820 | INFO     | overall cleanup function is called
[2025-10-12 23:47:45] 2025-10-13 03:47:08,827 | INFO     | --- collectZombieJob: --- 10, [25282]
[2025-10-12 23:47:45] 2025-10-13 03:47:08,827 | INFO     | zombie collector waiting for pid 25282
[2025-10-12 23:47:45] 2025-10-13 03:47:08,827 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 23:47:45] 2025-10-13 03:47:08,828 | INFO     | collected zombie processes
[2025-10-12 23:47:45] 2025-10-13 03:47:08,828 | INFO     | will attempt to kill all subprocesses of pid=25282
[2025-10-12 23:47:45] 2025-10-13 03:47:08,917 | INFO     | process IDs to be killed: [25282] (in reverse order)
[2025-10-12 23:47:45] 2025-10-13 03:47:08,970 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 23:47:45] 2025-10-13 03:47:08,971 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 23:47:45] 2025-10-13 03:47:08,974 | INFO     | did not find any defunct processes belonging to 25282
[2025-10-12 23:47:45] 2025-10-13 03:47:08,977 | INFO     | did not find any defunct processes belonging to 25282
[2025-10-12 23:47:45] 2025-10-13 03:47:08,978 | INFO     | ready for new job
[2025-10-12 23:47:45] 2025-10-13 03:47:08,978 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 23:47:45] 2025-10-13 03:47:08,979 | INFO     | ***************************************
[2025-10-12 23:47:45] 2025-10-13 03:47:08,980 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 23:47:45] 2025-10-13 03:47:08,980 | INFO     | ***************************************
[2025-10-12 23:47:45] 2025-10-13 03:47:08,980 | INFO     | 
[2025-10-12 23:47:45] 2025-10-13 03:47:08,980 | INFO     | architecture information:
[2025-10-12 23:47:45] 2025-10-13 03:47:08,981 | INFO     | executing command: cat /etc/os-release
[2025-10-12 23:47:45] 2025-10-13 03:47:08,996 | INFO     | cat /etc/os-release:
[2025-10-12 23:47:45] NAME="CentOS Linux"
[2025-10-12 23:47:45] VERSION="7 (Core)"
[2025-10-12 23:47:45] ID="centos"
[2025-10-12 23:47:45] ID_LIKE="rhel fedora"
[2025-10-12 23:47:45] VERSION_ID="7"
[2025-10-12 23:47:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 23:47:45] ANSI_COLOR="0;31"
[2025-10-12 23:47:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 23:47:45] HOME_URL="https://www.centos.org/"
[2025-10-12 23:47:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 23:47:45] 
[2025-10-12 23:47:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 23:47:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 23:47:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 23:47:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 23:47:45] 
[2025-10-12 23:47:45] 2025-10-13 03:47:08,996 | INFO     | ***************************************
[2025-10-12 23:47:45] 2025-10-13 03:47:09,499 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 23:47:45] 2025-10-13 03:47:09,516 | INFO     | sufficient remaining disk space (29362225152 B)
[2025-10-12 23:47:45] 2025-10-13 03:47:09,516 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 23:47:45] 2025-10-13 03:47:09,516 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 23:47:45] 2025-10-13 03:47:09,516 | INFO     | update_server=False
[2025-10-12 23:47:45] 2025-10-13 03:47:09,516 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 23:47:45] 2025-10-13 03:47:09,517 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:47:45] 2025-10-13 03:47:10,133 | INFO     | all data control threads have been joined
[2025-10-12 23:47:45] 2025-10-13 03:47:10,216 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 23:47:45] 2025-10-13 03:47:10,452 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:47:45] 2025-10-13 03:47:10,452 | INFO     | aborting loop
[2025-10-12 23:47:45] 2025-10-13 03:47:10,508 | INFO     | all job control threads have been joined
[2025-10-12 23:47:45] 2025-10-13 03:47:10,522 | INFO     | [job] retrieve thread has finished
[2025-10-12 23:47:45] 2025-10-13 03:47:10,522 | INFO     | [job] queue monitor thread has finished
[2025-10-12 23:47:45] 2025-10-13 03:47:10,523 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 23:47:45] 2025-10-13 03:47:10,550 | INFO     | [data] copytool_in thread has finished
[2025-10-12 23:47:45] 2025-10-13 03:47:10,684 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 23:47:45] 2025-10-13 03:47:10,700 | INFO     | all payload control threads have been joined
[2025-10-12 23:47:45] 2025-10-13 03:47:11,089 | INFO     | [payload] validate_post thread has finished
[2025-10-12 23:47:45] 2025-10-13 03:47:11,138 | INFO     | [data] control thread has finished
[2025-10-12 23:47:45] 2025-10-13 03:47:11,358 | INFO     | [job] validate thread has finished
[2025-10-12 23:47:45] 2025-10-13 03:47:11,457 | INFO     | [job] job monitor thread has finished
[2025-10-12 23:47:45] 2025-10-13 03:47:11,465 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 23:47:45] 2025-10-13 03:47:11,487 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 23:47:45] 2025-10-13 03:47:11,509 | INFO     | [job] control thread has finished
[2025-10-12 23:47:45] 2025-10-13 03:47:11,581 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 23:47:45] 2025-10-13 03:47:11,706 | INFO     | [payload] control thread has finished
[2025-10-12 23:47:45] 2025-10-13 03:47:11,900 | INFO     | [payload] failed_post thread has finished
[2025-10-12 23:47:45] 2025-10-13 03:47:12,221 | INFO     | [data] copytool_out thread has finished
[2025-10-12 23:47:45] 2025-10-13 03:47:15,587 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 23:47:45] 2025-10-13 03:47:39,084 | INFO     | PID=17925 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 23:47:45] 2025-10-13 03:47:39,085 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 23:47:45] 2025-10-13 03:47:39,085 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 23:47:45] 2025-10-13 03:47:39,085 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 23:47:45] 2025-10-13 03:47:39,294 | INFO     | [monitor] cgroup control has ended
[2025-10-12 23:47:45] 2025-10-13 03:47:40,317 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140240638879552)>', '<ExcThread(monitor, started 140240069060352)>']
[2025-10-12 23:47:45] 2025-10-13 03:47:41,096 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 23:47:45] 2025-10-13 03:47:41,096 | INFO     | [monitor] control thread has ended
[2025-10-12 23:47:45] 2025-10-13 03:47:45,342 | INFO     | all workflow threads have been joined
[2025-10-12 23:47:45] 2025-10-13 03:47:45,342 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 23:47:45] 2025-10-13 03:47:45,343 | INFO     | traces error code: 0
[2025-10-12 23:47:45] 2025-10-13 03:47:45,343 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 23:47:45] 2025-10-13 03:47:45,442 [wrapper] ==== pilot stdout END ====
[2025-10-12 23:47:45] 2025-10-13 03:47:45,446 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 23:47:45] 2025-10-13 03:47:45,450 [wrapper] pilotpid: 17925
[2025-10-12 23:47:45] 2025-10-13 03:47:45,454 [wrapper] Pilot exit status: 0
[2025-10-12 23:47:45] 2025-10-13 03:47:45,470 [wrapper] pandaids: 6840850905
[2025-10-12 23:47:45] 2025-10-13 03:47:45,512 [wrapper] cleanup supervisor_pilot 13532 17926
[2025-10-12 23:47:45] 2025-10-13 03:47:45,516 [wrapper] Test setup, not cleaning
[2025-10-12 23:47:45] 2025-10-13 03:47:45,520 [wrapper] apfmon messages muted
[2025-10-12 23:47:45] 2025-10-13 03:47:45,524 [wrapper] ==== wrapper stdout END ====
[2025-10-12 23:47:45] 2025-10-13 03:47:45,528 [wrapper] ==== wrapper stderr END ====
[2025-10-12 23:47:45]  *** Error codes and diagnostics ***
[2025-10-12 23:47:45]     "exeErrorCode": 0,
[2025-10-12 23:47:45]     "exeErrorDiag": "",
[2025-10-12 23:47:45]     "pilotErrorCode": 0,
[2025-10-12 23:47:45]     "pilotErrorDiag": "",
[2025-10-12 23:47:45]  *** Listing of results directory ***
[2025-10-12 23:47:45] total 410164
[2025-10-12 23:47:45] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 17:57 pilot3.tar.gz
[2025-10-12 23:47:45] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 18:15 queuedata.json
[2025-10-12 23:47:45] -rwx------ 1 boincer umatlas     36292 Oct 12 18:15 runpilot2-wrapper.sh
[2025-10-12 23:47:45] -rw-r--r-- 1 boincer umatlas       100 Oct 12 22:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 23:47:45] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 22:33 run_atlas
[2025-10-12 23:47:45] -rw-r--r-- 1 boincer umatlas       105 Oct 12 22:33 job.xml
[2025-10-12 23:47:45] -rw-r--r-- 2 boincer umatlas 220564249 Oct 12 22:33 EVNT.46676267._004606.pool.root.1
[2025-10-12 23:47:45] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 22:33 start_atlas.sh
[2025-10-12 23:47:45] drwxrwx--x 2 boincer umatlas      4096 Oct 12 22:33 shared
[2025-10-12 23:47:45] -rw-r--r-- 2 boincer umatlas    569676 Oct 12 22:33 input.tar.gz
[2025-10-12 23:47:45] -rw-r--r-- 1 boincer umatlas         0 Oct 12 22:33 boinc_lockfile
[2025-10-12 23:47:45] -rw-r--r-- 1 boincer umatlas      2547 Oct 12 22:33 pandaJob.out
[2025-10-12 23:47:45] -rw------- 1 boincer umatlas    974373 Oct 12 22:33 agis_schedconf.cvmfs.json
[2025-10-12 23:47:45] -rw------- 1 boincer umatlas   1560580 Oct 12 22:33 agis_ddmendpoints.agis.ALL.json
[2025-10-12 23:47:45] drwx------ 5 boincer umatlas      4096 Oct 12 22:33 pilot3
[2025-10-12 23:47:45] -rw-r--r-- 1 boincer umatlas      5952 Oct 12 23:45 init_data.xml
[2025-10-12 23:47:45] -rw------- 1 boincer umatlas 193519452 Oct 12 23:46 HITS.46676269._090853.pool.root.1
[2025-10-12 23:47:45] -rw-r--r-- 1 boincer umatlas       529 Oct 12 23:46 boinc_task_state.xml
[2025-10-12 23:47:45] -rw------- 1 boincer umatlas      1048 Oct 12 23:46 memory_monitor_summary.json
[2025-10-12 23:47:45] -rw------- 1 boincer umatlas    369353 Oct 12 23:46 log.46676269._090853.job.log.tgz.1
[2025-10-12 23:47:45] -rw------- 1 boincer umatlas      7851 Oct 12 23:47 heartbeat.json
[2025-10-12 23:47:45] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 23:47 boinc_mmap_file
[2025-10-12 23:47:45] -rw-r--r-- 1 boincer umatlas        27 Oct 12 23:47 wrapper_checkpoint.txt
[2025-10-12 23:47:45] -rw------- 1 boincer umatlas        95 Oct 12 23:47 pilot_heartbeat.json
[2025-10-12 23:47:45] -rw------- 1 boincer umatlas      4746 Oct 12 23:47 pilotlog.txt
[2025-10-12 23:47:45] -rw------- 1 boincer umatlas    640756 Oct 12 23:47 log.46676269._090853.job.log.1
[2025-10-12 23:47:45] -rw------- 1 boincer umatlas       357 Oct 12 23:47 output.list
[2025-10-12 23:47:45] -rw-r--r-- 1 boincer umatlas       620 Oct 12 23:47 runtime_log
[2025-10-12 23:47:45] -rw------- 1 boincer umatlas   1034240 Oct 12 23:47 result.tar.gz
[2025-10-12 23:47:45] -rw-r--r-- 1 boincer umatlas      8700 Oct 12 23:47 runtime_log.err
[2025-10-12 23:47:45] -rw------- 1 boincer umatlas       658 Oct 12 23:47 LaENDmfWJS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmQplNDmLFEnRo.diag
[2025-10-12 23:47:45] -rw-r--r-- 1 boincer umatlas     21961 Oct 12 23:47 stderr.txt
[2025-10-12 23:47:45] HITS file was successfully produced:
[2025-10-12 23:47:45] -rw------- 1 boincer umatlas 193519452 Oct 12 23:46 shared/HITS.pool.root.1
[2025-10-12 23:47:45]  *** Contents of shared directory: ***
[2025-10-12 23:47:45] total 405972
[2025-10-12 23:47:45] -rw-r--r-- 2 boincer umatlas 220564249 Oct 12 22:33 ATLAS.root_0
[2025-10-12 23:47:45] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 22:33 start_atlas.sh
[2025-10-12 23:47:45] -rw-r--r-- 2 boincer umatlas    569676 Oct 12 22:33 input.tar.gz
[2025-10-12 23:47:45] -rw------- 1 boincer umatlas 193519452 Oct 12 23:46 HITS.pool.root.1
[2025-10-12 23:47:45] -rw------- 1 boincer umatlas   1034240 Oct 12 23:47 result.tar.gz
23:47:47 (14248): run_atlas exited; CPU time 47183.696900
23:47:47 (14248): called boinc_finish(0)

</stderr_txt>
]]>

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