Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:49:31 (2847637): wrapper (7.7.26015): starting
18:49:31 (2847637): wrapper: running run_atlas (--nthreads 6)
[2025-10-13 18:49:31] Arguments: --nthreads 6
[2025-10-13 18:49:31] Threads: 6
[2025-10-13 18:49:31] Checking for CVMFS
[2025-10-13 18:49:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 18:49:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 18:49:31] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 18:49:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 18:49:32] 2.11.5.0 3385007 5691 99968 151656 1 187 13660633 20971520 861 130560 0 11342044 99.996 192507 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.35.143:3126 1
[2025-10-13 18:49:32] CVMFS is ok
[2025-10-13 18:49:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 18:49:32] Checking for apptainer binary...
[2025-10-13 18:49:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 18:49:32] Running /usr/bin/apptainer --version
[2025-10-13 18:49:32] apptainer version 1.3.6-1.el9
[2025-10-13 18:49:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 18:49:32] testio006
[2025-10-13 18:49:32] apptainer works
[2025-10-13 18:49:32] Set ATHENA_PROC_NUMBER=6
[2025-10-13 18:49:32] Set ATHENA_CORE_NUMBER=6
[2025-10-13 18:49:32] Starting ATLAS job with PandaID=6840850836
[2025-10-13 18:49:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 20:06:10]  *** The last 200 lines of the pilot log: ***
[2025-10-13 20:06:10]  replicas=None
[2025-10-13 20:06:10]  scope=mc23_13p6TeV
[2025-10-13 20:06:10]  status=None
[2025-10-13 20:06:10]  status_code=0
[2025-10-13 20:06:10]  storage_token=
[2025-10-13 20:06:10]  surl=/var/lib/boinc/slots/1/PanDA_Pilot-6840850836/log.46676269._090784.job.log.tgz.1
[2025-10-13 20:06:10]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bf/95/log.46676269._090784.job.log.tgz.1
[2025-10-13 20:06:10]  workdir=None
[2025-10-13 20:06:10] ]
[2025-10-13 20:06:10] 2025-10-13 11:05:34,234 | INFO     | transferring file log.46676269._090784.job.log.tgz.1 from /var/lib/boinc/slots/1/PanDA_Pilot-6840850836/log.46676269._090784.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-13 20:06:10] 2025-10-13 11:05:34,234 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/1/PanDA_Pilot-6840850836/log.46676269._090784.job.log.tgz.1 /var/lib/boinc/slots/1/log.46676269._090784.job
[2025-10-13 20:06:10] 2025-10-13 11:05:34,243 | INFO     | adding to output.list: log.46676269._090784.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bf/95/log.46676269._090784.job.log.tg
[2025-10-13 20:06:10] 2025-10-13 11:05:34,244 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 20:06:10] 2025-10-13 11:05:34,244 | INFO     | summary of transferred files:
[2025-10-13 20:06:10] 2025-10-13 11:05:34,244 | INFO     |  -- lfn=log.46676269._090784.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 20:06:10] 2025-10-13 11:05:34,244 | INFO     | stage-out finished correctly
[2025-10-13 20:06:10] 2025-10-13 11:05:35,102 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 20:06:10] 2025-10-13 11:05:35,295 | INFO     | time since job start (4555s) is within the limit (172800.0s)
[2025-10-13 20:06:10] 2025-10-13 11:05:36,065 | INFO     | monitor loop #346: job 0:6840850836 is in state 'finished'
[2025-10-13 20:06:10] 2025-10-13 11:05:36,065 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 20:06:10] 2025-10-13 11:05:36,503 | INFO     | job 6840850836 has state=finished
[2025-10-13 20:06:10] 2025-10-13 11:05:36,503 | INFO     | preparing for final server update for job 6840850836 in state='finished'
[2025-10-13 20:06:10] 2025-10-13 11:05:36,503 | INFO     | this job has now completed (state=finished)
[2025-10-13 20:06:10] 2025-10-13 11:05:36,503 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 20:06:10] 2025-10-13 11:05:36,504 | INFO     | log transfer has been attempted: DONE
[2025-10-13 20:06:10] 2025-10-13 11:05:36,504 | INFO     | job 6840850836 has finished - writing final server update
[2025-10-13 20:06:10] 2025-10-13 11:05:36,504 | INFO     | total number of processed events: 400 (read)
[2025-10-13 20:06:10] 2025-10-13 11:05:36,505 | INFO     | executing command: lscpu
[2025-10-13 20:06:10] 2025-10-13 11:05:36,519 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 20:06:10] 2025-10-13 11:05:37,301 | INFO     | time since job start (4557s) is within the limit (172800.0s)
[2025-10-13 20:06:10] 2025-10-13 11:05:38,568 | INFO     | monitor loop #347: job 0:6840850836 is in state 'finished'
[2025-10-13 20:06:10] 2025-10-13 11:05:38,568 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 20:06:10] 2025-10-13 11:05:38,717 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 20:06:10] 2025-10-13 11:05:38,719 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 4080.753875
[2025-10-13 20:06:10] 2025-10-13 11:05:38,720 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6840850836/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 20:06:10] 2025-10-13 11:05:38,721 | INFO     | extracted standard info from prmon json
[2025-10-13 20:06:10] 2025-10-13 11:05:38,721 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 20:06:10] 2025-10-13 11:05:38,721 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 20:06:10] 2025-10-13 11:05:38,721 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 20:06:10] 2025-10-13 11:05:38,721 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 20:06:10] 2025-10-13 11:05:38,722 | INFO     | fitting pss+swap vs Time
[2025-10-13 20:06:10] 2025-10-13 11:05:38,722 | INFO     | sum of square deviations: 97479037.0
[2025-10-13 20:06:10] 2025-10-13 11:05:38,722 | INFO     | sum of deviations: -1968924358.4999998
[2025-10-13 20:06:10] 2025-10-13 11:05:38,722 | INFO     | mean x: 1760351348.5
[2025-10-13 20:06:10] 2025-10-13 11:05:38,722 | INFO     | mean y: 2483774.544117647
[2025-10-13 20:06:10] 2025-10-13 11:05:38,722 | INFO     | -- intersect: 35558832670.153046
[2025-10-13 20:06:10] 2025-10-13 11:05:38,722 | INFO     | intersect: 35558832670.153046
[2025-10-13 20:06:10] 2025-10-13 11:05:38,722 | INFO     | chi2: 0.03915080600174669
[2025-10-13 20:06:10] 2025-10-13 11:05:38,722 | INFO     | -- intersect: 35558832670.153046
[2025-10-13 20:06:10] 2025-10-13 11:05:38,722 | INFO     | current memory leak: -20.20 B/s (using 68 data points, chi2=0.04)
[2025-10-13 20:06:10] 2025-10-13 11:05:38,723 | INFO     | could have reported an average CPU frequency of 4041 MHz (6 samples)
[2025-10-13 20:06:10] 2025-10-13 11:05:38,723 | INFO     | ..............................
[2025-10-13 20:06:10] 2025-10-13 11:05:38,723 | INFO     | . Timing measurements:
[2025-10-13 20:06:10] 2025-10-13 11:05:38,723 | INFO     | . get job = 0 s
[2025-10-13 20:06:10] 2025-10-13 11:05:38,723 | INFO     | . initial setup = 4 s
[2025-10-13 20:06:10] 2025-10-13 11:05:38,723 | INFO     | . payload setup = 2 s
[2025-10-13 20:06:10] 2025-10-13 11:05:38,723 | INFO     | . stage-in = 0 s
[2025-10-13 20:06:10] 2025-10-13 11:05:38,723 | INFO     | . payload execution = 4533 s
[2025-10-13 20:06:10] 2025-10-13 11:05:38,723 | INFO     | . stage-out = 0 s
[2025-10-13 20:06:10] 2025-10-13 11:05:38,723 | INFO     | . log creation = 0 s
[2025-10-13 20:06:10] 2025-10-13 11:05:38,723 | INFO     | ..............................
[2025-10-13 20:06:10] 2025-10-13 11:05:39,146 | INFO     | 
[2025-10-13 20:06:10] 2025-10-13 11:05:39,146 | INFO     | job summary report
[2025-10-13 20:06:10] 2025-10-13 11:05:39,146 | INFO     | --------------------------------------------------
[2025-10-13 20:06:10] 2025-10-13 11:05:39,146 | INFO     | PanDA job id: 6840850836
[2025-10-13 20:06:10] 2025-10-13 11:05:39,146 | INFO     | task id: 46676269
[2025-10-13 20:06:10] 2025-10-13 11:05:39,146 | INFO     | errors: (none)
[2025-10-13 20:06:10] 2025-10-13 11:05:39,146 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 20:06:10] 2025-10-13 11:05:39,146 | INFO     | pilot state: finished 
[2025-10-13 20:06:10] 2025-10-13 11:05:39,146 | INFO     | transexitcode: 0
[2025-10-13 20:06:10] 2025-10-13 11:05:39,146 | INFO     | exeerrorcode: 0
[2025-10-13 20:06:10] 2025-10-13 11:05:39,146 | INFO     | exeerrordiag: 
[2025-10-13 20:06:10] 2025-10-13 11:05:39,146 | INFO     | exitcode: 0
[2025-10-13 20:06:10] 2025-10-13 11:05:39,146 | INFO     | exitmsg: OK
[2025-10-13 20:06:10] 2025-10-13 11:05:39,147 | INFO     | cpuconsumptiontime: 24668 s
[2025-10-13 20:06:10] 2025-10-13 11:05:39,147 | INFO     | nevents: 400
[2025-10-13 20:06:10] 2025-10-13 11:05:39,147 | INFO     | neventsw: 0
[2025-10-13 20:06:10] 2025-10-13 11:05:39,147 | INFO     | pid: 2858129
[2025-10-13 20:06:10] 2025-10-13 11:05:39,147 | INFO     | pgrp: 2858129
[2025-10-13 20:06:10] 2025-10-13 11:05:39,147 | INFO     | corecount: 6
[2025-10-13 20:06:10] 2025-10-13 11:05:39,147 | INFO     | event service: False
[2025-10-13 20:06:10] 2025-10-13 11:05:39,147 | INFO     | sizes: {0: 2348857, 2: 2349119, 11: 2349147, 4539: 2375372, 4540: 2384370, 4541: 2384426, 4545: 2384748}
[2025-10-13 20:06:10] 2025-10-13 11:05:39,147 | INFO     | --------------------------------------------------
[2025-10-13 20:06:10] 2025-10-13 11:05:39,147 | INFO     | 
[2025-10-13 20:06:10] 2025-10-13 11:05:39,147 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-10-13 20:06:10] 2025-10-13 11:05:39,158 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 20:06:10] 2025-10-13 11:05:39,158 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 20:06:10] 2025-10-13 11:05:39,158 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 20:06:10] 2025-10-13 11:05:39,158 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 20:06:10] 2025-10-13 11:05:39,158 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 20:06:10] 2025-10-13 11:05:39,158 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 20:06:10] 2025-10-13 11:05:39,158 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 20:06:10] 2025-10-13 11:05:39,158 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 20:06:10] 2025-10-13 11:05:39,158 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 20:06:10] 2025-10-13 11:05:39,158 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 20:06:10] 2025-10-13 11:05:39,159 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 20:06:10] 2025-10-13 11:05:39,159 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 20:06:10] 2025-10-13 11:05:39,159 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 20:06:10] 2025-10-13 11:05:39,159 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 20:06:10] 2025-10-13 11:05:39,159 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 20:06:10] 2025-10-13 11:05:39,159 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 20:06:10] 2025-10-13 11:05:39,159 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 20:06:10] 2025-10-13 11:05:39,159 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 20:06:10] 2025-10-13 11:05:39,159 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 20:06:10] 2025-10-13 11:05:39,159 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 20:06:10] 2025-10-13 11:05:39,159 | INFO     | job 6840850836 has completed (purged errors)
[2025-10-13 20:06:10] 2025-10-13 11:05:39,159 | INFO     | overall cleanup function is called
[2025-10-13 20:06:10] 2025-10-13 11:05:40,165 | INFO     | --- collectZombieJob: --- 10, [2858129]
[2025-10-13 20:06:10] 2025-10-13 11:05:40,165 | INFO     | zombie collector waiting for pid 2858129
[2025-10-13 20:06:10] 2025-10-13 11:05:40,166 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 20:06:10] 2025-10-13 11:05:40,166 | INFO     | collected zombie processes
[2025-10-13 20:06:10] 2025-10-13 11:05:40,166 | INFO     | will attempt to kill all subprocesses of pid=2858129
[2025-10-13 20:06:10] 2025-10-13 11:05:40,224 | INFO     | process IDs to be killed: [2858129] (in reverse order)
[2025-10-13 20:06:10] 2025-10-13 11:05:40,251 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 20:06:10] 2025-10-13 11:05:40,251 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 20:06:10] 2025-10-13 11:05:40,253 | INFO     | did not find any defunct processes belonging to 2858129
[2025-10-13 20:06:10] 2025-10-13 11:05:40,255 | INFO     | did not find any defunct processes belonging to 2858129
[2025-10-13 20:06:10] 2025-10-13 11:05:40,255 | INFO     | ready for new job
[2025-10-13 20:06:10] 2025-10-13 11:05:40,255 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 20:06:10] 2025-10-13 11:05:40,256 | INFO     | ***************************************
[2025-10-13 20:06:10] 2025-10-13 11:05:40,256 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 20:06:10] 2025-10-13 11:05:40,256 | INFO     | ***************************************
[2025-10-13 20:06:10] 2025-10-13 11:05:40,256 | INFO     | 
[2025-10-13 20:06:10] 2025-10-13 11:05:40,257 | INFO     | architecture information:
[2025-10-13 20:06:10] 2025-10-13 11:05:40,257 | INFO     | executing command: cat /etc/os-release
[2025-10-13 20:06:10] 2025-10-13 11:05:40,264 | INFO     | cat /etc/os-release:
[2025-10-13 20:06:10] NAME="CentOS Linux"
[2025-10-13 20:06:10] VERSION="7 (Core)"
[2025-10-13 20:06:10] ID="centos"
[2025-10-13 20:06:10] ID_LIKE="rhel fedora"
[2025-10-13 20:06:10] VERSION_ID="7"
[2025-10-13 20:06:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 20:06:10] ANSI_COLOR="0;31"
[2025-10-13 20:06:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 20:06:10] HOME_URL="https://www.centos.org/"
[2025-10-13 20:06:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 20:06:10] 
[2025-10-13 20:06:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 20:06:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 20:06:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 20:06:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 20:06:10] 
[2025-10-13 20:06:10] 2025-10-13 11:05:40,264 | INFO     | ***************************************
[2025-10-13 20:06:10] 2025-10-13 11:05:40,768 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-10-13 20:06:10] 2025-10-13 11:05:40,777 | INFO     | sufficient remaining disk space (83621838848 B)
[2025-10-13 20:06:10] 2025-10-13 11:05:40,777 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 20:06:10] 2025-10-13 11:05:40,777 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 20:06:10] 2025-10-13 11:05:40,777 | INFO     | update_server=False
[2025-10-13 20:06:10] 2025-10-13 11:05:40,778 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 20:06:10] 2025-10-13 11:05:40,778 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 20:06:10] 2025-10-13 11:05:40,825 | INFO     | all data control threads have been joined
[2025-10-13 20:06:10] 2025-10-13 11:05:41,071 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 20:06:10] 2025-10-13 11:05:41,071 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 20:06:10] 2025-10-13 11:05:41,071 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 20:06:10] 2025-10-13 11:05:41,071 | INFO     | will abort loop
[2025-10-13 20:06:10] 2025-10-13 11:05:41,152 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 20:06:10] 2025-10-13 11:05:41,783 | INFO     | [job] retrieve thread has finished
[2025-10-13 20:06:10] 2025-10-13 11:05:41,830 | INFO     | [data] control thread has finished
[2025-10-13 20:06:10] 2025-10-13 11:05:41,857 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 20:06:10] 2025-10-13 11:05:41,903 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 20:06:10] 2025-10-13 11:05:41,975 | INFO     | all payload control threads have been joined
[2025-10-13 20:06:10] 2025-10-13 11:05:41,991 | INFO     | all job control threads have been joined
[2025-10-13 20:06:10] 2025-10-13 11:05:42,073 | INFO     | [job] job monitor thread has finished
[2025-10-13 20:06:10] 2025-10-13 11:05:42,405 | INFO     | [payload] validate_post thread has finished
[2025-10-13 20:06:10] 2025-10-13 11:05:42,783 | INFO     | [data] copytool_out thread has finished
[2025-10-13 20:06:10] 2025-10-13 11:05:42,787 | INFO     | [data] copytool_in thread has finished
[2025-10-13 20:06:10] 2025-10-13 11:05:42,981 | INFO     | [payload] control thread has finished
[2025-10-13 20:06:10] 2025-10-13 11:05:42,996 | INFO     | [job] control thread has finished
[2025-10-13 20:06:10] 2025-10-13 11:05:43,097 | INFO     | [job] validate thread has finished
[2025-10-13 20:06:10] 2025-10-13 11:05:43,273 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 20:06:10] 2025-10-13 11:05:43,308 | INFO     | [payload] failed_post thread has finished
[2025-10-13 20:06:10] 2025-10-13 11:05:43,783 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 20:06:10] 2025-10-13 11:05:44,788 | INFO     | [job] queue monitor thread has finished
[2025-10-13 20:06:10] 2025-10-13 11:05:45,157 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 20:06:10] 2025-10-13 11:05:46,717 | INFO     | [monitor] cgroup control has ended
[2025-10-13 20:06:10] 2025-10-13 11:05:50,853 | INFO     | job.realtimelogging is not enabled
[2025-10-13 20:06:10] 2025-10-13 11:05:51,859 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 20:06:10] 2025-10-13 11:05:52,535 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140208090376000)>', '<ExcThread(monitor, started 140207311542016)>']
[2025-10-13 20:06:10] 2025-10-13 11:05:57,551 | INFO     | all workflow threads have been joined
[2025-10-13 20:06:10] 2025-10-13 11:05:57,552 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 20:06:10] 2025-10-13 11:05:57,552 | INFO     | traces error code: 0
[2025-10-13 20:06:10] 2025-10-13 11:05:57,552 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 20:06:10] 2025-10-13 11:06:10,471 | INFO     | PID=2851411 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 20:06:10] 2025-10-13 11:06:10,472 | INFO     | .. there are 2 such processes running
[2025-10-13 20:06:10] 2025-10-13 11:06:10,472 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 20:06:10] 2025-10-13 11:06:10,472 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 20:06:10] 2025-10-13 11:06:10,472 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 20:06:10] 2025-10-13 11:06:10,472 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 20:06:10] 2025-10-13 11:06:10,472 | CRITICAL | thread 'MainThread' is not alive
[2025-10-13 20:06:10] 2025-10-13 11:06:10,472 | INFO     | [monitor] control thread has ended
[2025-10-13 20:06:10] 2025-10-13 11:06:10,539 [wrapper] ==== pilot stdout END ====
[2025-10-13 20:06:10] 2025-10-13 11:06:10,541 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 20:06:10] 2025-10-13 11:06:10,542 [wrapper] pilotpid: 2851411
[2025-10-13 20:06:10] 2025-10-13 11:06:10,544 [wrapper] Pilot exit status: 0
[2025-10-13 20:06:10] 2025-10-13 11:06:10,549 [wrapper] pandaids: 6840850836
[2025-10-13 20:06:10] 2025-10-13 11:06:10,569 [wrapper] cleanup supervisor_pilot 2876991 2851412
[2025-10-13 20:06:10] 2025-10-13 11:06:10,570 [wrapper] Test setup, not cleaning
[2025-10-13 20:06:10] 2025-10-13 11:06:10,572 [wrapper] apfmon messages muted
[2025-10-13 20:06:10] 2025-10-13 11:06:10,573 [wrapper] ==== wrapper stdout END ====
[2025-10-13 20:06:10] 2025-10-13 11:06:10,575 [wrapper] ==== wrapper stderr END ====
[2025-10-13 20:06:10]  *** Error codes and diagnostics ***
[2025-10-13 20:06:10]     "exeErrorCode": 0,
[2025-10-13 20:06:10]     "exeErrorDiag": "",
[2025-10-13 20:06:10]     "pilotErrorCode": 0,
[2025-10-13 20:06:10]     "pilotErrorDiag": "",
[2025-10-13 20:06:10]  *** Listing of results directory ***
[2025-10-13 20:06:10] total 408016
[2025-10-13 20:06:10] -rw-r--r--. 1 boinc boinc    557409 Oct 13 06:57 pilot3.tar.gz
[2025-10-13 20:06:10] -rw-r--r--. 1 boinc boinc      5112 Oct 13 07:09 queuedata.json
[2025-10-13 20:06:10] -rwx------. 1 boinc boinc     36292 Oct 13 07:10 runpilot2-wrapper.sh
[2025-10-13 20:06:10] -rw-r--r--. 1 boinc boinc       100 Oct 13 18:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 20:06:10] -rwxr-xr-x. 1 boinc boinc      7986 Oct 13 18:49 run_atlas
[2025-10-13 20:06:10] -rw-r--r--. 1 boinc boinc       105 Oct 13 18:49 job.xml
[2025-10-13 20:06:10] -rw-r--r--. 2 boinc boinc     15120 Oct 13 18:49 start_atlas.sh
[2025-10-13 20:06:10] drwxrwx--x. 2 boinc boinc        68 Oct 13 18:49 shared
[2025-10-13 20:06:10] -rw-r--r--. 2 boinc boinc    569678 Oct 13 18:49 input.tar.gz
[2025-10-13 20:06:10] -rw-r--r--. 1 boinc boinc      9465 Oct 13 18:49 init_data.xml
[2025-10-13 20:06:10] -rw-r--r--. 2 boinc boinc 219624224 Oct 13 18:49 EVNT.46676267._004334.pool.root.1
[2025-10-13 20:06:10] -rw-r--r--. 1 boinc boinc         0 Oct 13 18:49 boinc_lockfile
[2025-10-13 20:06:10] -rw-r--r--. 1 boinc boinc      2550 Oct 13 18:49 pandaJob.out
[2025-10-13 20:06:10] -rw-------. 1 boinc boinc    972849 Oct 13 18:49 agis_schedconf.cvmfs.json
[2025-10-13 20:06:10] -rw-------. 1 boinc boinc   1560580 Oct 13 18:49 agis_ddmendpoints.agis.ALL.json
[2025-10-13 20:06:10] drwx------. 5 boinc boinc      4096 Oct 13 18:49 pilot3
[2025-10-13 20:06:10] -rw-------. 1 boinc boinc        95 Oct 13 20:05 pilot_heartbeat.json
[2025-10-13 20:06:10] -rw-------. 1 boinc boinc 192366521 Oct 13 20:05 HITS.46676269._090784.pool.root.1
[2025-10-13 20:06:10] -rw-r--r--. 1 boinc boinc       529 Oct 13 20:05 boinc_task_state.xml
[2025-10-13 20:06:10] -rw-------. 1 boinc boinc      1017 Oct 13 20:05 memory_monitor_summary.json
[2025-10-13 20:06:10] -rw-------. 1 boinc boinc    286442 Oct 13 20:05 log.46676269._090784.job.log.tgz.1
[2025-10-13 20:06:10] -rw-------. 1 boinc boinc      7752 Oct 13 20:05 heartbeat.json
[2025-10-13 20:06:10] -rw-r--r--. 1 boinc boinc      8192 Oct 13 20:05 boinc_mmap_file
[2025-10-13 20:06:10] -rw-r--r--. 1 boinc boinc        27 Oct 13 20:05 wrapper_checkpoint.txt
[2025-10-13 20:06:10] -rw-------. 1 boinc boinc       892 Oct 13 20:06 pilotlog.txt
[2025-10-13 20:06:10] -rw-------. 1 boinc boinc    681727 Oct 13 20:06 log.46676269._090784.job.log.1
[2025-10-13 20:06:10] -rw-------. 1 boinc boinc       357 Oct 13 20:06 output.list
[2025-10-13 20:06:10] -rw-r--r--. 1 boinc boinc       620 Oct 13 20:06 runtime_log
[2025-10-13 20:06:10] -rw-------. 1 boinc boinc    983040 Oct 13 20:06 result.tar.gz
[2025-10-13 20:06:10] -rw-r--r--. 1 boinc boinc      8661 Oct 13 20:06 runtime_log.err
[2025-10-13 20:06:10] -rw-------. 1 boinc boinc       641 Oct 13 20:06 CgjKDmbRJS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmYolNDm9f8QNo.diag
[2025-10-13 20:06:10] -rw-r--r--. 1 boinc boinc     21444 Oct 13 20:06 stderr.txt
[2025-10-13 20:06:10] HITS file was successfully produced:
[2025-10-13 20:06:10] -rw-------. 1 boinc boinc 192366521 Oct 13 20:05 shared/HITS.pool.root.1
[2025-10-13 20:06:10]  *** Contents of shared directory: ***
[2025-10-13 20:06:10] total 403876
[2025-10-13 20:06:10] -rw-r--r--. 2 boinc boinc     15120 Oct 13 18:49 start_atlas.sh
[2025-10-13 20:06:10] -rw-r--r--. 2 boinc boinc    569678 Oct 13 18:49 input.tar.gz
[2025-10-13 20:06:10] -rw-r--r--. 2 boinc boinc 219624224 Oct 13 18:49 ATLAS.root_0
[2025-10-13 20:06:10] -rw-------. 1 boinc boinc 192366521 Oct 13 20:05 HITS.pool.root.1
[2025-10-13 20:06:10] -rw-------. 1 boinc boinc    983040 Oct 13 20:06 result.tar.gz
20:06:11 (2847637): run_atlas exited; CPU time 24707.155369
20:06:11 (2847637): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN