Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
22:22:46 (14682): wrapper (7.7.26015): starting
22:22:46 (14682): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 22:22:46] Arguments: --nthreads 12
[2025-10-12 22:22:46] Threads: 12
[2025-10-12 22:22:46] Checking for CVMFS
[2025-10-12 22:22:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 22:22:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 22:22:47] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 22:22:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 22:22:47] 2.11.2.0 3009 8983 85988 151645 3 56 19123060 20275200 1 130560 0 8629444 99.993 300921 43675 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 22:22:47] CVMFS is ok
[2025-10-12 22:22:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 22:22:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 22:22:47] Further information can be found at the LHC@home message board.
[2025-10-12 22:22:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 22:22:47] Checking for apptainer binary...
[2025-10-12 22:22:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 22:22:47] Running /usr/bin/apptainer --version
[2025-10-12 22:22:47] apptainer version 1.3.2-1.el7
[2025-10-12 22:22:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 22:22:48] c-115-42.aglt2.org
[2025-10-12 22:22:48] apptainer works
[2025-10-12 22:22:48] Set ATHENA_PROC_NUMBER=12
[2025-10-12 22:22:48] Set ATHENA_CORE_NUMBER=12
[2025-10-12 22:22:48] Starting ATLAS job with PandaID=6840849980
[2025-10-12 22:22:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 23:31:14]  *** The last 200 lines of the pilot log: ***
[2025-10-12 23:31:14]  protocol_id=None
[2025-10-12 23:31:14]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 23:31:14]  replicas=None
[2025-10-12 23:31:14]  scope=mc23_13p6TeV
[2025-10-12 23:31:14]  status=None
[2025-10-12 23:31:14]  status_code=0
[2025-10-12 23:31:14]  storage_token=
[2025-10-12 23:31:14]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6840849980/log.46676269._090572.job.log.tgz.1
[2025-10-12 23:31:14]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c3/46/log.46676269._090572.job.log.tgz.1
[2025-10-12 23:31:14]  workdir=None
[2025-10-12 23:31:14] ]
[2025-10-12 23:31:14] 2025-10-13 03:30:08,301 | INFO     | transferring file log.46676269._090572.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6840849980/log.46676269._090572.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 23:31:14] 2025-10-13 03:30:08,301 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6840849980/log.46676269._090572.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._090572.job
[2025-10-12 23:31:14] 2025-10-13 03:30:08,323 | INFO     | adding to output.list: log.46676269._090572.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c3/46/log.46676269._090572.job.log.tg
[2025-10-12 23:31:14] 2025-10-13 03:30:08,324 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 23:31:14] 2025-10-13 03:30:08,324 | INFO     | summary of transferred files:
[2025-10-12 23:31:14] 2025-10-13 03:30:08,325 | INFO     |  -- lfn=log.46676269._090572.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 23:31:14] 2025-10-13 03:30:08,325 | INFO     | stage-out finished correctly
[2025-10-12 23:31:14] 2025-10-13 03:30:08,402 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 23:31:14] 2025-10-13 03:30:08,474 | INFO     | job 6840849980 has state=finished
[2025-10-12 23:31:14] 2025-10-13 03:30:08,474 | INFO     | preparing for final server update for job 6840849980 in state='finished'
[2025-10-12 23:31:14] 2025-10-13 03:30:08,475 | INFO     | this job has now completed (state=finished)
[2025-10-12 23:31:14] 2025-10-13 03:30:08,475 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 23:31:14] 2025-10-13 03:30:08,475 | INFO     | log transfer has been attempted: DONE
[2025-10-12 23:31:14] 2025-10-13 03:30:08,475 | INFO     | job 6840849980 has finished - writing final server update
[2025-10-12 23:31:14] 2025-10-13 03:30:08,475 | INFO     | total number of processed events: 400 (read)
[2025-10-12 23:31:14] 2025-10-13 03:30:08,476 | INFO     | executing command: lscpu
[2025-10-12 23:31:14] 2025-10-13 03:30:08,499 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 23:31:14] 2025-10-13 03:30:08,678 | INFO     | time since job start (4025s) is within the limit (172800.0s)
[2025-10-12 23:31:14] 2025-10-13 03:30:09,680 | WARNING  | process 24758 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 23:31:14] 2025-10-13 03:30:09,681 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840849980/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 23:31:14] 2025-10-13 03:30:09,763 | INFO     | number of running child processes to parent process 24758: 1
[2025-10-12 23:31:14] 2025-10-13 03:30:09,764 | INFO     | maximum number of monitored processes: 6
[2025-10-12 23:31:14] 2025-10-13 03:30:10,683 | INFO     | time since job start (4027s) is within the limit (172800.0s)
[2025-10-12 23:31:14] 2025-10-13 03:30:12,267 | INFO     | monitor loop #301: job 0:6840849980 is in state 'finished'
[2025-10-12 23:31:14] 2025-10-13 03:30:12,267 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 23:31:14] 2025-10-13 03:30:12,688 | INFO     | time since job start (4029s) is within the limit (172800.0s)
[2025-10-12 23:31:14] 2025-10-13 03:30:13,919 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 23:31:14] 2025-10-13 03:30:13,923 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-10-12 23:31:14] 2025-10-13 03:30:13,925 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840849980/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 23:31:14] 2025-10-13 03:30:13,926 | INFO     | extracted standard info from prmon json
[2025-10-12 23:31:14] 2025-10-13 03:30:13,926 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 23:31:14] 2025-10-13 03:30:13,926 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 23:31:14] 2025-10-13 03:30:13,927 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 23:31:14] 2025-10-13 03:30:13,927 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 23:31:14] 2025-10-13 03:30:13,928 | INFO     | fitting pss+swap vs Time
[2025-10-12 23:31:14] 2025-10-13 03:30:13,928 | INFO     | sum of square deviations: 63666310.0
[2025-10-12 23:31:14] 2025-10-13 03:30:13,928 | INFO     | sum of deviations: -3811046553.0
[2025-10-12 23:31:14] 2025-10-13 03:30:13,928 | INFO     | mean x: 1760324285.0
[2025-10-12 23:31:14] 2025-10-13 03:30:13,929 | INFO     | mean y: 2912743.966101695
[2025-10-12 23:31:14] 2025-10-13 03:30:13,929 | INFO     | -- intersect: 105375405645.02223
[2025-10-12 23:31:14] 2025-10-13 03:30:13,929 | INFO     | intersect: 105375405645.02223
[2025-10-12 23:31:14] 2025-10-13 03:30:13,929 | INFO     | chi2: 0.10054477713235352
[2025-10-12 23:31:14] 2025-10-13 03:30:13,929 | INFO     | -- intersect: 105375405645.02223
[2025-10-12 23:31:14] 2025-10-13 03:30:13,929 | INFO     | current memory leak: -59.86 B/s (using 59 data points, chi2=0.10)
[2025-10-12 23:31:14] 2025-10-13 03:30:13,929 | INFO     | could have reported an average CPU frequency of 2170 MHz (6 samples)
[2025-10-12 23:31:14] 2025-10-13 03:30:13,930 | INFO     | ..............................
[2025-10-12 23:31:14] 2025-10-13 03:30:13,930 | INFO     | . Timing measurements:
[2025-10-12 23:31:14] 2025-10-13 03:30:13,930 | INFO     | . get job = 0 s
[2025-10-12 23:31:14] 2025-10-13 03:30:13,930 | INFO     | . initial setup = 2 s
[2025-10-12 23:31:14] 2025-10-13 03:30:13,930 | INFO     | . payload setup = 6 s
[2025-10-12 23:31:14] 2025-10-13 03:30:13,930 | INFO     | . stage-in = 0 s
[2025-10-12 23:31:14] 2025-10-13 03:30:13,930 | INFO     | . payload execution = 3997 s
[2025-10-12 23:31:14] 2025-10-13 03:30:13,930 | INFO     | . stage-out = 0 s
[2025-10-12 23:31:14] 2025-10-13 03:30:13,930 | INFO     | . log creation = 0 s
[2025-10-12 23:31:14] 2025-10-13 03:30:13,930 | INFO     | ..............................
[2025-10-12 23:31:14] 2025-10-13 03:30:14,005 | INFO     | 
[2025-10-12 23:31:14] 2025-10-13 03:30:14,005 | INFO     | job summary report
[2025-10-12 23:31:14] 2025-10-13 03:30:14,005 | INFO     | --------------------------------------------------
[2025-10-12 23:31:14] 2025-10-13 03:30:14,006 | INFO     | PanDA job id: 6840849980
[2025-10-12 23:31:14] 2025-10-13 03:30:14,006 | INFO     | task id: 46676269
[2025-10-12 23:31:14] 2025-10-13 03:30:14,006 | INFO     | errors: (none)
[2025-10-12 23:31:14] 2025-10-13 03:30:14,006 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 23:31:14] 2025-10-13 03:30:14,006 | INFO     | pilot state: finished 
[2025-10-12 23:31:14] 2025-10-13 03:30:14,006 | INFO     | transexitcode: 0
[2025-10-12 23:31:14] 2025-10-13 03:30:14,007 | INFO     | exeerrorcode: 0
[2025-10-12 23:31:14] 2025-10-13 03:30:14,007 | INFO     | exeerrordiag: 
[2025-10-12 23:31:14] 2025-10-13 03:30:14,007 | INFO     | exitcode: 0
[2025-10-12 23:31:14] 2025-10-13 03:30:14,007 | INFO     | exitmsg: OK
[2025-10-12 23:31:14] 2025-10-13 03:30:14,007 | INFO     | cpuconsumptiontime: 43278 s
[2025-10-12 23:31:14] 2025-10-13 03:30:14,007 | INFO     | nevents: 400
[2025-10-12 23:31:14] 2025-10-13 03:30:14,008 | INFO     | neventsw: 0
[2025-10-12 23:31:14] 2025-10-13 03:30:14,008 | INFO     | pid: 24758
[2025-10-12 23:31:14] 2025-10-13 03:30:14,008 | INFO     | pgrp: 24758
[2025-10-12 23:31:14] 2025-10-13 03:30:14,008 | INFO     | corecount: 12
[2025-10-12 23:31:14] 2025-10-13 03:30:14,008 | INFO     | event service: False
[2025-10-12 23:31:14] 2025-10-13 03:30:14,008 | INFO     | sizes: {0: 2348857, 5: 2349119, 11: 2349175, 4008: 2375016, 4010: 2384070, 4015: 2384208}
[2025-10-12 23:31:14] 2025-10-13 03:30:14,009 | INFO     | --------------------------------------------------
[2025-10-12 23:31:14] 2025-10-13 03:30:14,009 | INFO     | 
[2025-10-12 23:31:14] 2025-10-13 03:30:14,009 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 23:31:14] 2025-10-13 03:30:14,033 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 23:31:14] 2025-10-13 03:30:14,034 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 23:31:14] 2025-10-13 03:30:14,034 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 23:31:14] 2025-10-13 03:30:14,034 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 23:31:14] 2025-10-13 03:30:14,034 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 23:31:14] 2025-10-13 03:30:14,034 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 23:31:14] 2025-10-13 03:30:14,034 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 23:31:14] 2025-10-13 03:30:14,035 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 23:31:14] 2025-10-13 03:30:14,035 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 23:31:14] 2025-10-13 03:30:14,035 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 23:31:14] 2025-10-13 03:30:14,035 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 23:31:14] 2025-10-13 03:30:14,035 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 23:31:14] 2025-10-13 03:30:14,035 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 23:31:14] 2025-10-13 03:30:14,036 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 23:31:14] 2025-10-13 03:30:14,036 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 23:31:14] 2025-10-13 03:30:14,036 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 23:31:14] 2025-10-13 03:30:14,036 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 23:31:14] 2025-10-13 03:30:14,036 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 23:31:14] 2025-10-13 03:30:14,036 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 23:31:14] 2025-10-13 03:30:14,037 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 23:31:14] 2025-10-13 03:30:14,037 | INFO     | job 6840849980 has completed (purged errors)
[2025-10-12 23:31:14] 2025-10-13 03:30:14,037 | INFO     | overall cleanup function is called
[2025-10-12 23:31:14] 2025-10-13 03:30:15,045 | INFO     | --- collectZombieJob: --- 10, [24758]
[2025-10-12 23:31:14] 2025-10-13 03:30:15,045 | INFO     | zombie collector waiting for pid 24758
[2025-10-12 23:31:14] 2025-10-13 03:30:15,045 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 23:31:14] 2025-10-13 03:30:15,046 | INFO     | collected zombie processes
[2025-10-12 23:31:14] 2025-10-13 03:30:15,046 | INFO     | will attempt to kill all subprocesses of pid=24758
[2025-10-12 23:31:14] 2025-10-13 03:30:15,134 | INFO     | process IDs to be killed: [24758] (in reverse order)
[2025-10-12 23:31:14] 2025-10-13 03:30:15,184 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 23:31:14] 2025-10-13 03:30:15,184 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 23:31:14] 2025-10-13 03:30:15,188 | INFO     | did not find any defunct processes belonging to 24758
[2025-10-12 23:31:14] 2025-10-13 03:30:15,191 | INFO     | did not find any defunct processes belonging to 24758
[2025-10-12 23:31:14] 2025-10-13 03:30:15,191 | INFO     | ready for new job
[2025-10-12 23:31:14] 2025-10-13 03:30:15,191 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 23:31:14] 2025-10-13 03:30:15,193 | INFO     | ***************************************
[2025-10-12 23:31:14] 2025-10-13 03:30:15,193 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 23:31:14] 2025-10-13 03:30:15,193 | INFO     | ***************************************
[2025-10-12 23:31:14] 2025-10-13 03:30:15,193 | INFO     | 
[2025-10-12 23:31:14] 2025-10-13 03:30:15,194 | INFO     | architecture information:
[2025-10-12 23:31:14] 2025-10-13 03:30:15,194 | INFO     | executing command: cat /etc/os-release
[2025-10-12 23:31:14] 2025-10-13 03:30:15,210 | INFO     | cat /etc/os-release:
[2025-10-12 23:31:14] NAME="CentOS Linux"
[2025-10-12 23:31:14] VERSION="7 (Core)"
[2025-10-12 23:31:14] ID="centos"
[2025-10-12 23:31:14] ID_LIKE="rhel fedora"
[2025-10-12 23:31:14] VERSION_ID="7"
[2025-10-12 23:31:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 23:31:14] ANSI_COLOR="0;31"
[2025-10-12 23:31:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 23:31:14] HOME_URL="https://www.centos.org/"
[2025-10-12 23:31:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 23:31:14] 
[2025-10-12 23:31:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 23:31:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 23:31:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 23:31:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 23:31:14] 
[2025-10-12 23:31:14] 2025-10-13 03:30:15,210 | INFO     | ***************************************
[2025-10-12 23:31:14] 2025-10-13 03:30:15,712 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 23:31:14] 2025-10-13 03:30:15,729 | INFO     | sufficient remaining disk space (18579718144 B)
[2025-10-12 23:31:14] 2025-10-13 03:30:15,729 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 23:31:14] 2025-10-13 03:30:15,729 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 23:31:14] 2025-10-13 03:30:15,729 | INFO     | update_server=False
[2025-10-12 23:31:14] 2025-10-13 03:30:15,730 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 23:31:14] 2025-10-13 03:30:15,730 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:31:14] 2025-10-13 03:30:15,775 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:31:14] 2025-10-13 03:30:15,775 | INFO     | aborting loop
[2025-10-12 23:31:14] 2025-10-13 03:30:15,897 | INFO     | all data control threads have been joined
[2025-10-12 23:31:14] 2025-10-13 03:30:16,411 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 23:31:14] 2025-10-13 03:30:16,519 | INFO     | all payload control threads have been joined
[2025-10-12 23:31:14] 2025-10-13 03:30:16,651 | INFO     | all job control threads have been joined
[2025-10-12 23:31:14] 2025-10-13 03:30:16,731 | INFO     | [job] retrieve thread has finished
[2025-10-12 23:31:14] 2025-10-13 03:30:16,735 | INFO     | [job] queue monitor thread has finished
[2025-10-12 23:31:14] 2025-10-13 03:30:16,777 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 23:31:14] 2025-10-13 03:30:16,781 | INFO     | [job] job monitor thread has finished
[2025-10-12 23:31:14] 2025-10-13 03:30:16,902 | INFO     | [data] control thread has finished
[2025-10-12 23:31:14] 2025-10-13 03:30:17,038 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 23:31:14] 2025-10-13 03:30:17,048 | INFO     | [data] copytool_in thread has finished
[2025-10-12 23:31:14] 2025-10-13 03:30:17,248 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 23:31:14] 2025-10-13 03:30:17,464 | INFO     | [payload] validate_post thread has finished
[2025-10-12 23:31:14] 2025-10-13 03:30:17,524 | INFO     | [payload] control thread has finished
[2025-10-12 23:31:14] 2025-10-13 03:30:17,656 | INFO     | [job] control thread has finished
[2025-10-12 23:31:14] 2025-10-13 03:30:17,917 | INFO     | [payload] failed_post thread has finished
[2025-10-12 23:31:14] 2025-10-13 03:30:17,987 | INFO     | [job] validate thread has finished
[2025-10-12 23:31:14] 2025-10-13 03:30:18,059 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 23:31:14] 2025-10-13 03:30:18,417 | INFO     | [data] copytool_out thread has finished
[2025-10-12 23:31:14] 2025-10-13 03:30:18,988 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 23:31:14] 2025-10-13 03:30:22,994 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 23:31:14] 2025-10-13 03:30:45,881 | INFO     | PID=18361 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 23:31:14] 2025-10-13 03:30:45,881 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 23:31:14] 2025-10-13 03:30:45,881 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 23:31:14] 2025-10-13 03:30:45,881 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 23:31:14] 2025-10-13 03:31:08,990 | INFO     | [monitor] cgroup control has ended
[2025-10-12 23:31:14] 2025-10-13 03:31:09,441 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140173983762240)>', '<ExcThread(monitor, started 140173094414080)>']
[2025-10-12 23:31:14] 2025-10-13 03:31:09,995 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 23:31:14] 2025-10-13 03:31:09,995 | INFO     | [monitor] control thread has ended
[2025-10-12 23:31:14] 2025-10-13 03:31:14,453 | INFO     | all workflow threads have been joined
[2025-10-12 23:31:14] 2025-10-13 03:31:14,453 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 23:31:14] 2025-10-13 03:31:14,453 | INFO     | traces error code: 0
[2025-10-12 23:31:14] 2025-10-13 03:31:14,454 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 23:31:14] 2025-10-13 03:31:14,540 [wrapper] ==== pilot stdout END ====
[2025-10-12 23:31:14] 2025-10-13 03:31:14,544 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 23:31:14] 2025-10-13 03:31:14,547 [wrapper] pilotpid: 18361
[2025-10-12 23:31:14] 2025-10-13 03:31:14,551 [wrapper] Pilot exit status: 0
[2025-10-12 23:31:14] 2025-10-13 03:31:14,567 [wrapper] pandaids: 6840849980
[2025-10-12 23:31:14] 2025-10-13 03:31:14,614 [wrapper] cleanup supervisor_pilot 22957 18362
[2025-10-12 23:31:14] 2025-10-13 03:31:14,618 [wrapper] Test setup, not cleaning
[2025-10-12 23:31:14] 2025-10-13 03:31:14,622 [wrapper] apfmon messages muted
[2025-10-12 23:31:14] 2025-10-13 03:31:14,625 [wrapper] ==== wrapper stdout END ====
[2025-10-12 23:31:14] 2025-10-13 03:31:14,629 [wrapper] ==== wrapper stderr END ====
[2025-10-12 23:31:14]  *** Error codes and diagnostics ***
[2025-10-12 23:31:14]     "exeErrorCode": 0,
[2025-10-12 23:31:14]     "exeErrorDiag": "",
[2025-10-12 23:31:14]     "pilotErrorCode": 0,
[2025-10-12 23:31:14]     "pilotErrorDiag": "",
[2025-10-12 23:31:14]  *** Listing of results directory ***
[2025-10-12 23:31:14] total 415504
[2025-10-12 23:31:14] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 17:57 pilot3.tar.gz
[2025-10-12 23:31:14] -rwx------ 1 boincer umatlas     36292 Oct 12 18:00 runpilot2-wrapper.sh
[2025-10-12 23:31:14] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 18:00 queuedata.json
[2025-10-12 23:31:14] -rw-r--r-- 1 boincer umatlas       100 Oct 12 22:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 23:31:14] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 22:22 run_atlas
[2025-10-12 23:31:14] -rw-r--r-- 1 boincer umatlas       105 Oct 12 22:22 job.xml
[2025-10-12 23:31:14] -rw-r--r-- 2 boincer umatlas 223560042 Oct 12 22:22 EVNT.46676267._004054.pool.root.1
[2025-10-12 23:31:14] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 22:22 start_atlas.sh
[2025-10-12 23:31:14] drwxrwx--x 2 boincer umatlas      4096 Oct 12 22:22 shared
[2025-10-12 23:31:14] -rw-r--r-- 2 boincer umatlas    569676 Oct 12 22:22 input.tar.gz
[2025-10-12 23:31:14] -rw-r--r-- 1 boincer umatlas         0 Oct 12 22:22 boinc_lockfile
[2025-10-12 23:31:14] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 22:22 pandaJob.out
[2025-10-12 23:31:14] -rw------- 1 boincer umatlas    974373 Oct 12 22:23 agis_schedconf.cvmfs.json
[2025-10-12 23:31:14] -rw------- 1 boincer umatlas   1560580 Oct 12 22:23 agis_ddmendpoints.agis.ALL.json
[2025-10-12 23:31:14] drwx------ 5 boincer umatlas      4096 Oct 12 22:23 pilot3
[2025-10-12 23:31:14] -rw-r--r-- 1 boincer umatlas      5954 Oct 12 23:29 init_data.xml
[2025-10-12 23:31:14] -rw------- 1 boincer umatlas 196058518 Oct 12 23:29 HITS.46676269._090572.pool.root.1
[2025-10-12 23:31:14] -rw------- 1 boincer umatlas        95 Oct 12 23:29 pilot_heartbeat.json
[2025-10-12 23:31:14] -rw-r--r-- 1 boincer umatlas       529 Oct 12 23:29 boinc_task_state.xml
[2025-10-12 23:31:14] -rw------- 1 boincer umatlas      1049 Oct 12 23:30 memory_monitor_summary.json
[2025-10-12 23:31:14] -rw------- 1 boincer umatlas    387096 Oct 12 23:30 log.46676269._090572.job.log.tgz.1
[2025-10-12 23:31:14] -rw------- 1 boincer umatlas      7858 Oct 12 23:30 heartbeat.json
[2025-10-12 23:31:14] -rw-r--r-- 1 boincer umatlas        27 Oct 12 23:31 wrapper_checkpoint.txt
[2025-10-12 23:31:14] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 23:31 boinc_mmap_file
[2025-10-12 23:31:14] -rw------- 1 boincer umatlas      4746 Oct 12 23:31 pilotlog.txt
[2025-10-12 23:31:14] -rw------- 1 boincer umatlas    592199 Oct 12 23:31 log.46676269._090572.job.log.1
[2025-10-12 23:31:14] -rw------- 1 boincer umatlas       357 Oct 12 23:31 output.list
[2025-10-12 23:31:14] -rw-r--r-- 1 boincer umatlas       620 Oct 12 23:31 runtime_log
[2025-10-12 23:31:14] -rw------- 1 boincer umatlas   1003520 Oct 12 23:31 result.tar.gz
[2025-10-12 23:31:14] -rw------- 1 boincer umatlas       659 Oct 12 23:31 oDAMDmSIJS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHmlNDmjoPkGn.diag
[2025-10-12 23:31:14] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 23:31 runtime_log.err
[2025-10-12 23:31:14] -rw-r--r-- 1 boincer umatlas     21774 Oct 12 23:31 stderr.txt
[2025-10-12 23:31:14] HITS file was successfully produced:
[2025-10-12 23:31:14] -rw------- 1 boincer umatlas 196058518 Oct 12 23:29 shared/HITS.pool.root.1
[2025-10-12 23:31:14]  *** Contents of shared directory: ***
[2025-10-12 23:31:14] total 411344
[2025-10-12 23:31:14] -rw-r--r-- 2 boincer umatlas 223560042 Oct 12 22:22 ATLAS.root_0
[2025-10-12 23:31:14] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 22:22 start_atlas.sh
[2025-10-12 23:31:14] -rw-r--r-- 2 boincer umatlas    569676 Oct 12 22:22 input.tar.gz
[2025-10-12 23:31:14] -rw------- 1 boincer umatlas 196058518 Oct 12 23:29 HITS.pool.root.1
[2025-10-12 23:31:14] -rw------- 1 boincer umatlas   1003520 Oct 12 23:31 result.tar.gz
23:31:16 (14682): run_atlas exited; CPU time 43274.763764
23:31:16 (14682): called boinc_finish(0)

</stderr_txt>
]]>

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