Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
22:17:04 (13960): wrapper (7.7.26015): starting
22:17:04 (13960): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 22:17:04] Arguments: --nthreads 12
[2025-10-12 22:17:04] Threads: 12
[2025-10-12 22:17:04] Checking for CVMFS
[2025-10-12 22:17:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 22:17:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 22:17:05] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 22:17:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 22:17:05] 2.11.2.0 2984 223664 96988 151644 1 57 15193426 20275200 1 130560 1 110652866 99.984 13395492 12641 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 22:17:05] CVMFS is ok
[2025-10-12 22:17:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 22:17:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 22:17:05] Further information can be found at the LHC@home message board.
[2025-10-12 22:17:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 22:17:05] Checking for apptainer binary...
[2025-10-12 22:17:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 22:17:05] Running /usr/bin/apptainer --version
[2025-10-12 22:17:05] apptainer version 1.3.2-1.el7
[2025-10-12 22:17:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 22:17:06] c-205-26.aglt2.org
[2025-10-12 22:17:06] apptainer works
[2025-10-12 22:17:06] Set ATHENA_PROC_NUMBER=12
[2025-10-12 22:17:06] Set ATHENA_CORE_NUMBER=12
[2025-10-12 22:17:06] Starting ATLAS job with PandaID=6840849886
[2025-10-12 22:17:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 23:31:33]  *** The last 200 lines of the pilot log: ***
[2025-10-12 23:31:33]  replicas=None
[2025-10-12 23:31:33]  scope=mc23_13p6TeV
[2025-10-12 23:31:33]  status=None
[2025-10-12 23:31:33]  status_code=0
[2025-10-12 23:31:33]  storage_token=
[2025-10-12 23:31:33]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6840849886/log.46676269._090478.job.log.tgz.1
[2025-10-12 23:31:33]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2c/b2/log.46676269._090478.job.log.tgz.1
[2025-10-12 23:31:33]  workdir=None
[2025-10-12 23:31:33] ]
[2025-10-12 23:31:33] 2025-10-13 03:30:22,915 | INFO     | transferring file log.46676269._090478.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6840849886/log.46676269._090478.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 23:31:33] 2025-10-13 03:30:22,915 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6840849886/log.46676269._090478.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._090478.job
[2025-10-12 23:31:33] 2025-10-13 03:30:22,939 | INFO     | adding to output.list: log.46676269._090478.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2c/b2/log.46676269._090478.job.log.tg
[2025-10-12 23:31:33] 2025-10-13 03:30:22,940 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 23:31:33] 2025-10-13 03:30:22,940 | INFO     | summary of transferred files:
[2025-10-12 23:31:33] 2025-10-13 03:30:22,940 | INFO     |  -- lfn=log.46676269._090478.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 23:31:33] 2025-10-13 03:30:22,941 | INFO     | stage-out finished correctly
[2025-10-12 23:31:33] 2025-10-13 03:30:23,195 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 23:31:33] 2025-10-13 03:30:23,551 | INFO     | time since job start (4382s) is within the limit (172800.0s)
[2025-10-12 23:31:33] 2025-10-13 03:30:23,552 | INFO     | 4384s have passed since pilot start - server update state is 'RUNNING'
[2025-10-12 23:31:33] 2025-10-13 03:30:24,432 | INFO     | job 6840849886 has state=finished
[2025-10-12 23:31:33] 2025-10-13 03:30:24,432 | INFO     | preparing for final server update for job 6840849886 in state='finished'
[2025-10-12 23:31:33] 2025-10-13 03:30:24,433 | INFO     | this job has now completed (state=finished)
[2025-10-12 23:31:33] 2025-10-13 03:30:24,433 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 23:31:33] 2025-10-13 03:30:24,433 | INFO     | log transfer has been attempted: DONE
[2025-10-12 23:31:33] 2025-10-13 03:30:24,433 | INFO     | job 6840849886 has finished - writing final server update
[2025-10-12 23:31:33] 2025-10-13 03:30:24,434 | INFO     | total number of processed events: 400 (read)
[2025-10-12 23:31:33] 2025-10-13 03:30:24,434 | INFO     | executing command: lscpu
[2025-10-12 23:31:33] 2025-10-13 03:30:24,460 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 23:31:33] 2025-10-13 03:30:25,320 | WARNING  | process 23995 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 23:31:33] 2025-10-13 03:30:25,320 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840849886/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 23:31:33] 2025-10-13 03:30:25,411 | INFO     | number of running child processes to parent process 23995: 1
[2025-10-12 23:31:33] 2025-10-13 03:30:25,411 | INFO     | maximum number of monitored processes: 6
[2025-10-12 23:31:33] 2025-10-13 03:30:25,557 | INFO     | time since job start (4384s) is within the limit (172800.0s)
[2025-10-12 23:31:33] 2025-10-13 03:30:27,563 | INFO     | time since job start (4386s) is within the limit (172800.0s)
[2025-10-12 23:31:33] 2025-10-13 03:30:27,914 | INFO     | monitor loop #326: job 0:6840849886 is in state 'finished'
[2025-10-12 23:31:33] 2025-10-13 03:30:27,914 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 23:31:33] 2025-10-13 03:30:29,081 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 23:31:33] 2025-10-13 03:30:29,085 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-10-12 23:31:33] 2025-10-13 03:30:29,087 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840849886/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 23:31:33] 2025-10-13 03:30:29,088 | INFO     | extracted standard info from prmon json
[2025-10-12 23:31:33] 2025-10-13 03:30:29,088 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 23:31:33] 2025-10-13 03:30:29,088 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 23:31:33] 2025-10-13 03:30:29,088 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 23:31:33] 2025-10-13 03:30:29,089 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 23:31:33] 2025-10-13 03:30:29,090 | INFO     | fitting pss+swap vs Time
[2025-10-12 23:31:33] 2025-10-13 03:30:29,091 | INFO     | sum of square deviations: 85136480.0
[2025-10-12 23:31:33] 2025-10-13 03:30:29,091 | INFO     | sum of deviations: -1755774956.0000002
[2025-10-12 23:31:33] 2025-10-13 03:30:29,091 | INFO     | mean x: 1760324127.0
[2025-10-12 23:31:33] 2025-10-13 03:30:29,091 | INFO     | mean y: 2771479.707692308
[2025-10-12 23:31:33] 2025-10-13 03:30:29,092 | INFO     | -- intersect: 36306046135.051254
[2025-10-12 23:31:33] 2025-10-13 03:30:29,092 | INFO     | intersect: 36306046135.051254
[2025-10-12 23:31:33] 2025-10-13 03:30:29,092 | INFO     | chi2: 0.01826193487096179
[2025-10-12 23:31:33] 2025-10-13 03:30:29,092 | INFO     | -- intersect: 36306046135.051254
[2025-10-12 23:31:33] 2025-10-13 03:30:29,092 | INFO     | current memory leak: -20.62 B/s (using 65 data points, chi2=0.02)
[2025-10-12 23:31:33] 2025-10-13 03:30:29,092 | INFO     | could have reported an average CPU frequency of 2061 MHz (6 samples)
[2025-10-12 23:31:33] 2025-10-13 03:30:29,093 | INFO     | ..............................
[2025-10-12 23:31:33] 2025-10-13 03:30:29,093 | INFO     | . Timing measurements:
[2025-10-12 23:31:33] 2025-10-13 03:30:29,093 | INFO     | . get job = 0 s
[2025-10-12 23:31:33] 2025-10-13 03:30:29,093 | INFO     | . initial setup = 2 s
[2025-10-12 23:31:33] 2025-10-13 03:30:29,093 | INFO     | . payload setup = 7 s
[2025-10-12 23:31:33] 2025-10-13 03:30:29,093 | INFO     | . stage-in = 0 s
[2025-10-12 23:31:33] 2025-10-13 03:30:29,093 | INFO     | . payload execution = 4353 s
[2025-10-12 23:31:33] 2025-10-13 03:30:29,094 | INFO     | . stage-out = 0 s
[2025-10-12 23:31:33] 2025-10-13 03:30:29,094 | INFO     | . log creation = 0 s
[2025-10-12 23:31:33] 2025-10-13 03:30:29,094 | INFO     | ..............................
[2025-10-12 23:31:33] 2025-10-13 03:30:29,178 | INFO     | 
[2025-10-12 23:31:33] 2025-10-13 03:30:29,178 | INFO     | job summary report
[2025-10-12 23:31:33] 2025-10-13 03:30:29,178 | INFO     | --------------------------------------------------
[2025-10-12 23:31:33] 2025-10-13 03:30:29,179 | INFO     | PanDA job id: 6840849886
[2025-10-12 23:31:33] 2025-10-13 03:30:29,179 | INFO     | task id: 46676269
[2025-10-12 23:31:33] 2025-10-13 03:30:29,179 | INFO     | errors: (none)
[2025-10-12 23:31:33] 2025-10-13 03:30:29,179 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 23:31:33] 2025-10-13 03:30:29,179 | INFO     | pilot state: finished 
[2025-10-12 23:31:33] 2025-10-13 03:30:29,179 | INFO     | transexitcode: 0
[2025-10-12 23:31:33] 2025-10-13 03:30:29,180 | INFO     | exeerrorcode: 0
[2025-10-12 23:31:33] 2025-10-13 03:30:29,180 | INFO     | exeerrordiag: 
[2025-10-12 23:31:33] 2025-10-13 03:30:29,180 | INFO     | exitcode: 0
[2025-10-12 23:31:33] 2025-10-13 03:30:29,180 | INFO     | exitmsg: OK
[2025-10-12 23:31:33] 2025-10-13 03:30:29,180 | INFO     | cpuconsumptiontime: 47872 s
[2025-10-12 23:31:33] 2025-10-13 03:30:29,180 | INFO     | nevents: 400
[2025-10-12 23:31:33] 2025-10-13 03:30:29,181 | INFO     | neventsw: 0
[2025-10-12 23:31:33] 2025-10-13 03:30:29,181 | INFO     | pid: 23995
[2025-10-12 23:31:33] 2025-10-13 03:30:29,181 | INFO     | pgrp: 23995
[2025-10-12 23:31:33] 2025-10-13 03:30:29,181 | INFO     | corecount: 12
[2025-10-12 23:31:33] 2025-10-13 03:30:29,181 | INFO     | event service: False
[2025-10-12 23:31:33] 2025-10-13 03:30:29,181 | INFO     | sizes: {0: 2348680, 1: 2348879, 5: 2349141, 11: 2349197, 4364: 2375275, 4365: 2384457, 4371: 2384595}
[2025-10-12 23:31:33] 2025-10-13 03:30:29,181 | INFO     | --------------------------------------------------
[2025-10-12 23:31:33] 2025-10-13 03:30:29,182 | INFO     | 
[2025-10-12 23:31:33] 2025-10-13 03:30:29,182 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 23:31:33] 2025-10-13 03:30:29,205 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 23:31:33] 2025-10-13 03:30:29,206 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 23:31:33] 2025-10-13 03:30:29,206 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 23:31:33] 2025-10-13 03:30:29,206 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 23:31:33] 2025-10-13 03:30:29,206 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 23:31:33] 2025-10-13 03:30:29,206 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 23:31:33] 2025-10-13 03:30:29,206 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 23:31:33] 2025-10-13 03:30:29,207 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 23:31:33] 2025-10-13 03:30:29,207 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 23:31:33] 2025-10-13 03:30:29,207 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 23:31:33] 2025-10-13 03:30:29,207 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 23:31:33] 2025-10-13 03:30:29,207 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 23:31:33] 2025-10-13 03:30:29,207 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 23:31:33] 2025-10-13 03:30:29,208 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 23:31:33] 2025-10-13 03:30:29,208 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 23:31:33] 2025-10-13 03:30:29,208 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 23:31:33] 2025-10-13 03:30:29,208 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 23:31:33] 2025-10-13 03:30:29,208 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 23:31:33] 2025-10-13 03:30:29,209 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 23:31:33] 2025-10-13 03:30:29,209 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 23:31:33] 2025-10-13 03:30:29,209 | INFO     | job 6840849886 has completed (purged errors)
[2025-10-12 23:31:33] 2025-10-13 03:30:29,209 | INFO     | overall cleanup function is called
[2025-10-12 23:31:33] 2025-10-13 03:30:30,217 | INFO     | --- collectZombieJob: --- 10, [23995]
[2025-10-12 23:31:33] 2025-10-13 03:30:30,218 | INFO     | zombie collector waiting for pid 23995
[2025-10-12 23:31:33] 2025-10-13 03:30:30,218 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 23:31:33] 2025-10-13 03:30:30,218 | INFO     | collected zombie processes
[2025-10-12 23:31:33] 2025-10-13 03:30:30,218 | INFO     | will attempt to kill all subprocesses of pid=23995
[2025-10-12 23:31:33] 2025-10-13 03:30:30,312 | INFO     | process IDs to be killed: [23995] (in reverse order)
[2025-10-12 23:31:33] 2025-10-13 03:30:30,364 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 23:31:33] 2025-10-13 03:30:30,364 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 23:31:33] 2025-10-13 03:30:30,367 | INFO     | did not find any defunct processes belonging to 23995
[2025-10-12 23:31:33] 2025-10-13 03:30:30,370 | INFO     | did not find any defunct processes belonging to 23995
[2025-10-12 23:31:33] 2025-10-13 03:30:30,370 | INFO     | ready for new job
[2025-10-12 23:31:33] 2025-10-13 03:30:30,370 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 23:31:33] 2025-10-13 03:30:30,371 | INFO     | ***************************************
[2025-10-12 23:31:33] 2025-10-13 03:30:30,371 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 23:31:33] 2025-10-13 03:30:30,371 | INFO     | ***************************************
[2025-10-12 23:31:33] 2025-10-13 03:30:30,371 | INFO     | 
[2025-10-12 23:31:33] 2025-10-13 03:30:30,372 | INFO     | architecture information:
[2025-10-12 23:31:33] 2025-10-13 03:30:30,372 | INFO     | executing command: cat /etc/os-release
[2025-10-12 23:31:33] 2025-10-13 03:30:30,388 | INFO     | cat /etc/os-release:
[2025-10-12 23:31:33] NAME="CentOS Linux"
[2025-10-12 23:31:33] VERSION="7 (Core)"
[2025-10-12 23:31:33] ID="centos"
[2025-10-12 23:31:33] ID_LIKE="rhel fedora"
[2025-10-12 23:31:33] VERSION_ID="7"
[2025-10-12 23:31:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 23:31:33] ANSI_COLOR="0;31"
[2025-10-12 23:31:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 23:31:33] HOME_URL="https://www.centos.org/"
[2025-10-12 23:31:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 23:31:33] 
[2025-10-12 23:31:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 23:31:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 23:31:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 23:31:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 23:31:33] 
[2025-10-12 23:31:33] 2025-10-13 03:30:30,388 | INFO     | ***************************************
[2025-10-12 23:31:33] 2025-10-13 03:30:30,891 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 23:31:33] 2025-10-13 03:30:30,908 | INFO     | sufficient remaining disk space (29358030848 B)
[2025-10-12 23:31:33] 2025-10-13 03:30:30,908 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 23:31:33] 2025-10-13 03:30:30,909 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 23:31:33] 2025-10-13 03:30:30,909 | INFO     | update_server=False
[2025-10-12 23:31:33] 2025-10-13 03:30:30,909 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 23:31:33] 2025-10-13 03:30:30,909 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:31:33] 2025-10-13 03:30:31,037 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 23:31:33] 2025-10-13 03:30:31,422 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:31:33] 2025-10-13 03:30:31,422 | INFO     | aborting loop
[2025-10-12 23:31:33] 2025-10-13 03:30:31,454 | INFO     | all data control threads have been joined
[2025-10-12 23:31:33] 2025-10-13 03:30:31,671 | INFO     | all payload control threads have been joined
[2025-10-12 23:31:33] 2025-10-13 03:30:31,802 | INFO     | all job control threads have been joined
[2025-10-12 23:31:33] 2025-10-13 03:30:31,914 | INFO     | [job] retrieve thread has finished
[2025-10-12 23:31:33] 2025-10-13 03:30:31,915 | INFO     | [job] queue monitor thread has finished
[2025-10-12 23:31:33] 2025-10-13 03:30:32,128 | INFO     | [job] validate thread has finished
[2025-10-12 23:31:33] 2025-10-13 03:30:32,129 | INFO     | [payload] validate_post thread has finished
[2025-10-12 23:31:33] 2025-10-13 03:30:32,283 | INFO     | [payload] failed_post thread has finished
[2025-10-12 23:31:33] 2025-10-13 03:30:32,408 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 23:31:33] 2025-10-13 03:30:32,428 | INFO     | [job] job monitor thread has finished
[2025-10-12 23:31:33] 2025-10-13 03:30:32,460 | INFO     | [data] control thread has finished
[2025-10-12 23:31:33] 2025-10-13 03:30:32,677 | INFO     | [payload] control thread has finished
[2025-10-12 23:31:33] 2025-10-13 03:30:32,746 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 23:31:33] 2025-10-13 03:30:32,786 | INFO     | [data] copytool_in thread has finished
[2025-10-12 23:31:33] 2025-10-13 03:30:32,808 | INFO     | [job] control thread has finished
[2025-10-12 23:31:33] 2025-10-13 03:30:32,944 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 23:31:33] 2025-10-13 03:30:33,043 | INFO     | [data] copytool_out thread has finished
[2025-10-12 23:31:33] 2025-10-13 03:30:33,788 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 23:31:33] 2025-10-13 03:30:37,794 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 23:31:33] 2025-10-13 03:30:41,503 | INFO     | job.realtimelogging is not enabled
[2025-10-12 23:31:33] 2025-10-13 03:30:42,508 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 23:31:33] 2025-10-13 03:31:00,763 | INFO     | PID=17631 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 23:31:33] 2025-10-13 03:31:00,763 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 23:31:33] 2025-10-13 03:31:00,763 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 23:31:33] 2025-10-13 03:31:00,763 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 23:31:33] 2025-10-13 03:31:28,308 | INFO     | [monitor] cgroup control has ended
[2025-10-12 23:31:33] 2025-10-13 03:31:28,505 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139953850767168)>', '<ExcThread(monitor, started 139952943769344)>']
[2025-10-12 23:31:33] 2025-10-13 03:31:28,899 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 23:31:33] 2025-10-13 03:31:28,899 | INFO     | [monitor] control thread has ended
[2025-10-12 23:31:33] 2025-10-13 03:31:33,532 | INFO     | all workflow threads have been joined
[2025-10-12 23:31:33] 2025-10-13 03:31:33,542 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 23:31:33] 2025-10-13 03:31:33,543 | INFO     | traces error code: 0
[2025-10-12 23:31:33] 2025-10-13 03:31:33,544 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 23:31:33] 2025-10-13 03:31:33,644 [wrapper] ==== pilot stdout END ====
[2025-10-12 23:31:33] 2025-10-13 03:31:33,648 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 23:31:33] 2025-10-13 03:31:33,652 [wrapper] pilotpid: 17631
[2025-10-12 23:31:33] 2025-10-13 03:31:33,655 [wrapper] Pilot exit status: 0
[2025-10-12 23:31:33] 2025-10-13 03:31:33,670 [wrapper] pandaids: 6840849886
[2025-10-12 23:31:33] 2025-10-13 03:31:33,720 [wrapper] cleanup supervisor_pilot  7679 17632
[2025-10-12 23:31:33] 2025-10-13 03:31:33,724 [wrapper] Test setup, not cleaning
[2025-10-12 23:31:33] 2025-10-13 03:31:33,728 [wrapper] apfmon messages muted
[2025-10-12 23:31:33] 2025-10-13 03:31:33,731 [wrapper] ==== wrapper stdout END ====
[2025-10-12 23:31:33] 2025-10-13 03:31:33,735 [wrapper] ==== wrapper stderr END ====
[2025-10-12 23:31:33]  *** Error codes and diagnostics ***
[2025-10-12 23:31:33]     "exeErrorCode": 0,
[2025-10-12 23:31:33]     "exeErrorDiag": "",
[2025-10-12 23:31:33]     "pilotErrorCode": 0,
[2025-10-12 23:31:33]     "pilotErrorDiag": "",
[2025-10-12 23:31:33]  *** Listing of results directory ***
[2025-10-12 23:31:33] total 414844
[2025-10-12 23:31:33] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 17:56 queuedata.json
[2025-10-12 23:31:33] -rwx------ 1 boincer umatlas     36292 Oct 12 17:57 runpilot2-wrapper.sh
[2025-10-12 23:31:33] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 17:57 pilot3.tar.gz
[2025-10-12 23:31:33] -rw-r--r-- 1 boincer umatlas       100 Oct 12 22:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 23:31:33] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 22:17 run_atlas
[2025-10-12 23:31:33] -rw-r--r-- 1 boincer umatlas       105 Oct 12 22:17 job.xml
[2025-10-12 23:31:33] -rw-r--r-- 2 boincer umatlas 223581089 Oct 12 22:17 EVNT.46676267._004847.pool.root.1
[2025-10-12 23:31:33] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 22:17 start_atlas.sh
[2025-10-12 23:31:33] drwxrwx--x 2 boincer umatlas      4096 Oct 12 22:17 shared
[2025-10-12 23:31:33] -rw-r--r-- 2 boincer umatlas    569674 Oct 12 22:17 input.tar.gz
[2025-10-12 23:31:33] -rw-r--r-- 1 boincer umatlas         0 Oct 12 22:17 boinc_lockfile
[2025-10-12 23:31:33] -rw-r--r-- 1 boincer umatlas      2547 Oct 12 22:17 pandaJob.out
[2025-10-12 23:31:33] -rw------- 1 boincer umatlas    975595 Oct 12 22:17 agis_schedconf.cvmfs.json
[2025-10-12 23:31:33] -rw------- 1 boincer umatlas   1560580 Oct 12 22:17 agis_ddmendpoints.agis.ALL.json
[2025-10-12 23:31:33] drwx------ 5 boincer umatlas      4096 Oct 12 22:17 pilot3
[2025-10-12 23:31:33] -rw------- 1 boincer umatlas 195306132 Oct 12 23:29 HITS.46676269._090478.pool.root.1
[2025-10-12 23:31:33] -rw-r--r-- 1 boincer umatlas       529 Oct 12 23:30 boinc_task_state.xml
[2025-10-12 23:31:33] -rw------- 1 boincer umatlas      1048 Oct 12 23:30 memory_monitor_summary.json
[2025-10-12 23:31:33] -rw------- 1 boincer umatlas        95 Oct 12 23:30 pilot_heartbeat.json
[2025-10-12 23:31:33] -rw------- 1 boincer umatlas    365908 Oct 12 23:30 log.46676269._090478.job.log.tgz.1
[2025-10-12 23:31:33] -rw------- 1 boincer umatlas      7851 Oct 12 23:30 heartbeat.json
[2025-10-12 23:31:33] -rw-r--r-- 1 boincer umatlas      5953 Oct 12 23:30 init_data.xml
[2025-10-12 23:31:33] -rw-r--r-- 1 boincer umatlas        27 Oct 12 23:31 wrapper_checkpoint.txt
[2025-10-12 23:31:33] -rw------- 1 boincer umatlas      4818 Oct 12 23:31 pilotlog.txt
[2025-10-12 23:31:33] -rw------- 1 boincer umatlas    637541 Oct 12 23:31 log.46676269._090478.job.log.1
[2025-10-12 23:31:33] -rw------- 1 boincer umatlas       357 Oct 12 23:31 output.list
[2025-10-12 23:31:33] -rw-r--r-- 1 boincer umatlas       620 Oct 12 23:31 runtime_log
[2025-10-12 23:31:33] -rw------- 1 boincer umatlas   1024000 Oct 12 23:31 result.tar.gz
[2025-10-12 23:31:33] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 23:31 runtime_log.err
[2025-10-12 23:31:33] -rw------- 1 boincer umatlas       659 Oct 12 23:31 BNCODmVFJS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmWllNDm6sJgwm.diag
[2025-10-12 23:31:33] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 23:31 boinc_mmap_file
[2025-10-12 23:31:33] -rw-r--r-- 1 boincer umatlas     21820 Oct 12 23:31 stderr.txt
[2025-10-12 23:31:33] HITS file was successfully produced:
[2025-10-12 23:31:33] -rw------- 1 boincer umatlas 195306132 Oct 12 23:29 shared/HITS.pool.root.1
[2025-10-12 23:31:33]  *** Contents of shared directory: ***
[2025-10-12 23:31:33] total 410656
[2025-10-12 23:31:33] -rw-r--r-- 2 boincer umatlas 223581089 Oct 12 22:17 ATLAS.root_0
[2025-10-12 23:31:33] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 22:17 start_atlas.sh
[2025-10-12 23:31:33] -rw-r--r-- 2 boincer umatlas    569674 Oct 12 22:17 input.tar.gz
[2025-10-12 23:31:33] -rw------- 1 boincer umatlas 195306132 Oct 12 23:29 HITS.pool.root.1
[2025-10-12 23:31:33] -rw------- 1 boincer umatlas   1024000 Oct 12 23:31 result.tar.gz
23:31:35 (13960): run_atlas exited; CPU time 47842.867170
23:31:35 (13960): called boinc_finish(0)

</stderr_txt>
]]>

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