Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:35:34 (2000070): wrapper (7.7.26015): starting
23:35:34 (2000070): wrapper: running run_atlas (--nthreads 9)
[2025-10-12 23:35:34] Arguments: --nthreads 9
[2025-10-12 23:35:34] Threads: 9
[2025-10-12 23:35:34] Checking for CVMFS
[2025-10-12 23:35:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 23:35:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 23:35:35] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 23:35:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 23:35:36] 2.13.2.0 3836034 139108 889880 151647 1 160 31048432 40960001 48642 16776704 213 393985778 99.785 224735340 18952 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 23:35:36] CVMFS is ok
[2025-10-12 23:35:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 23:35:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 23:35:36] Further information can be found at the LHC@home message board.
[2025-10-12 23:35:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 23:35:36] Checking for apptainer binary...
[2025-10-12 23:35:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 23:35:36] Running /usr/bin/apptainer --version
[2025-10-12 23:35:37] apptainer version 1.4.3-1.el9
[2025-10-12 23:35:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 23:35:37] lc-12-9.aglt2.org
[2025-10-12 23:35:37] apptainer works
[2025-10-12 23:35:37] Set ATHENA_PROC_NUMBER=9
[2025-10-12 23:35:37] Set ATHENA_CORE_NUMBER=9
[2025-10-12 23:35:37] Starting ATLAS job with PandaID=6840714673
[2025-10-12 23:35:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 05:45:46]  *** The last 200 lines of the pilot log: ***
[2025-10-13 05:45:47] 2025-10-13 09:45:01,393 | INFO     | fitting pss+swap vs Time
[2025-10-13 05:45:47] 2025-10-13 09:45:01,394 | INFO     | sum of square deviations: 14347163332.32865
[2025-10-13 05:45:47] 2025-10-13 09:45:01,416 | INFO     | sum of deviations: 34329765060.309155
[2025-10-13 05:45:47] 2025-10-13 09:45:01,417 | INFO     | mean x: 1760337675.7325904
[2025-10-13 05:45:47] 2025-10-13 09:45:01,417 | INFO     | mean y: 2118253.409470752
[2025-10-13 05:45:47] 2025-10-13 09:45:01,417 | INFO     | -- intersect: -4210002110.37968
[2025-10-13 05:45:47] 2025-10-13 09:45:01,417 | INFO     | intersect: -4210002110.37968
[2025-10-13 05:45:47] 2025-10-13 09:45:01,418 | INFO     | chi2: 4.350601312060289
[2025-10-13 05:45:47] 2025-10-13 09:45:01,440 | INFO     | sum of square deviations: 13756054146.067795
[2025-10-13 05:45:47] 2025-10-13 09:45:01,512 | INFO     | sum of deviations: 77584555124.76279
[2025-10-13 05:45:47] 2025-10-13 09:45:01,512 | INFO     | mean x: 1760337523.2372882
[2025-10-13 05:45:47] 2025-10-13 09:45:01,512 | INFO     | mean y: 2129330.8361581923
[2025-10-13 05:45:47] 2025-10-13 09:45:01,512 | INFO     | -- intersect: -9926226734.033804
[2025-10-13 05:45:47] 2025-10-13 09:45:01,513 | INFO     | intersect: -9926226734.033804
[2025-10-13 05:45:47] 2025-10-13 09:45:01,513 | INFO     | chi2: 2.8551765206521256
[2025-10-13 05:45:47] 2025-10-13 09:45:01,513 | INFO     | current chi2=2.8551765206521256 (change=34.3728299640489 %)
[2025-10-13 05:45:47] 2025-10-13 09:45:01,514 | INFO     | sum of square deviations: 13181345238.217812
[2025-10-13 05:45:47] 2025-10-13 09:45:01,538 | INFO     | sum of deviations: 80920669193.28075
[2025-10-13 05:45:47] 2025-10-13 09:45:01,539 | INFO     | mean x: 1760337370.7335243
[2025-10-13 05:45:47] 2025-10-13 09:45:01,539 | INFO     | mean y: 2130210.787965616
[2025-10-13 05:45:47] 2025-10-13 09:45:01,539 | INFO     | -- intersect: -10804633095.333954
[2025-10-13 05:45:47] 2025-10-13 09:45:01,539 | INFO     | intersect: -10804633095.333954
[2025-10-13 05:45:47] 2025-10-13 09:45:01,563 | INFO     | chi2: 2.843107556113192
[2025-10-13 05:45:47] 2025-10-13 09:45:01,563 | INFO     | current chi2=2.843107556113192 (change=0.42270467172995635 %)
[2025-10-13 05:45:47] 2025-10-13 09:45:01,563 | INFO     | right removable region: 348
[2025-10-13 05:45:47] 2025-10-13 09:45:01,564 | INFO     | sum of square deviations: 13755958802.590351
[2025-10-13 05:45:47] 2025-10-13 09:45:01,589 | INFO     | sum of deviations: -39280862256.257065
[2025-10-13 05:45:47] 2025-10-13 09:45:01,589 | INFO     | mean x: 1760337828.240113
[2025-10-13 05:45:47] 2025-10-13 09:45:01,589 | INFO     | mean y: 2137188.426553672
[2025-10-13 05:45:47] 2025-10-13 09:45:01,590 | INFO     | -- intersect: 5028874237.286977
[2025-10-13 05:45:47] 2025-10-13 09:45:01,590 | INFO     | intersect: 5028874237.286977
[2025-10-13 05:45:47] 2025-10-13 09:45:01,590 | INFO     | chi2: 2.0090388577299434
[2025-10-13 05:45:47] 2025-10-13 09:45:01,590 | INFO     | current chi2=2.0090388577299434 (change=53.82158203831059 %)
[2025-10-13 05:45:47] 2025-10-13 09:45:01,591 | INFO     | sum of square deviations: 13181219941.810966
[2025-10-13 05:45:47] 2025-10-13 09:45:01,615 | INFO     | sum of deviations: -63109453879.57592
[2025-10-13 05:45:47] 2025-10-13 09:45:01,616 | INFO     | mean x: 1760337980.747851
[2025-10-13 05:45:47] 2025-10-13 09:45:01,616 | INFO     | mean y: 2143484.2320916904
[2025-10-13 05:45:47] 2025-10-13 09:45:01,616 | INFO     | -- intersect: 8430344295.60624
[2025-10-13 05:45:47] 2025-10-13 09:45:01,616 | INFO     | intersect: 8430344295.60624
[2025-10-13 05:45:47] 2025-10-13 09:45:01,616 | INFO     | chi2: 1.7096888145064184
[2025-10-13 05:45:47] 2025-10-13 09:45:01,617 | INFO     | current chi2=1.7096888145064184 (change=14.900161939215407 %)
[2025-10-13 05:45:47] 2025-10-13 09:45:01,617 | INFO     | left removable region: 20
[2025-10-13 05:45:47] 2025-10-13 09:45:01,640 | INFO     | sum of square deviations: 10941987892.39027
[2025-10-13 05:45:47] 2025-10-13 09:45:01,643 | INFO     | sum of deviations: -3963829124.4634104
[2025-10-13 05:45:47] 2025-10-13 09:45:01,644 | INFO     | mean x: 1760337950.2682927
[2025-10-13 05:45:47] 2025-10-13 09:45:01,644 | INFO     | mean y: 2153487.6189024393
[2025-10-13 05:45:47] 2025-10-13 09:45:01,644 | INFO     | -- intersect: 639851034.4261317
[2025-10-13 05:45:47] 2025-10-13 09:45:01,644 | INFO     | intersect: 639851034.4261317
[2025-10-13 05:45:47] 2025-10-13 09:45:01,668 | INFO     | chi2: 0.1468646418437973
[2025-10-13 05:45:47] 2025-10-13 09:45:01,668 | INFO     | -- intersect: 639851034.4261317
[2025-10-13 05:45:47] 2025-10-13 09:45:01,668 | INFO     | current memory leak: -0.36 B/s (using 328 data points, chi2=0.15)
[2025-10-13 05:45:47] 2025-10-13 09:45:01,669 | INFO     | could have reported an average CPU frequency of 2633 MHz (15 samples)
[2025-10-13 05:45:47] 2025-10-13 09:45:01,669 | INFO     | ..............................
[2025-10-13 05:45:47] 2025-10-13 09:45:01,669 | INFO     | . Timing measurements:
[2025-10-13 05:45:47] 2025-10-13 09:45:01,669 | INFO     | . get job = 0 s
[2025-10-13 05:45:47] 2025-10-13 09:45:01,669 | INFO     | . initial setup = 7 s
[2025-10-13 05:45:47] 2025-10-13 09:45:01,669 | INFO     | . payload setup = 47 s
[2025-10-13 05:45:47] 2025-10-13 09:45:01,669 | INFO     | . stage-in = 0 s
[2025-10-13 05:45:47] 2025-10-13 09:45:01,670 | INFO     | . payload execution = 21916 s
[2025-10-13 05:45:47] 2025-10-13 09:45:01,670 | INFO     | . stage-out = 12 s
[2025-10-13 05:45:47] 2025-10-13 09:45:01,670 | INFO     | . log creation = 1 s
[2025-10-13 05:45:47] 2025-10-13 09:45:01,670 | INFO     | ..............................
[2025-10-13 05:45:47] 2025-10-13 09:45:03,652 | INFO     | 
[2025-10-13 05:45:47] 2025-10-13 09:45:03,652 | INFO     | job summary report
[2025-10-13 05:45:47] 2025-10-13 09:45:03,652 | INFO     | --------------------------------------------------
[2025-10-13 05:45:47] 2025-10-13 09:45:03,653 | INFO     | PanDA job id: 6840714673
[2025-10-13 05:45:47] 2025-10-13 09:45:03,653 | INFO     | task id: 46676269
[2025-10-13 05:45:47] 2025-10-13 09:45:03,653 | INFO     | errors: (none)
[2025-10-13 05:45:47] 2025-10-13 09:45:03,653 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 05:45:47] 2025-10-13 09:45:03,653 | INFO     | pilot state: finished 
[2025-10-13 05:45:47] 2025-10-13 09:45:03,653 | INFO     | transexitcode: 0
[2025-10-13 05:45:47] 2025-10-13 09:45:03,653 | INFO     | exeerrorcode: 0
[2025-10-13 05:45:47] 2025-10-13 09:45:03,684 | INFO     | exeerrordiag: 
[2025-10-13 05:45:47] 2025-10-13 09:45:03,684 | INFO     | exitcode: 0
[2025-10-13 05:45:47] 2025-10-13 09:45:03,684 | INFO     | exitmsg: OK
[2025-10-13 05:45:47] 2025-10-13 09:45:03,684 | INFO     | cpuconsumptiontime: 44712 s
[2025-10-13 05:45:47] 2025-10-13 09:45:03,685 | INFO     | nevents: 400
[2025-10-13 05:45:47] 2025-10-13 09:45:03,685 | INFO     | neventsw: 0
[2025-10-13 05:45:47] 2025-10-13 09:45:03,685 | INFO     | pid: 2025565
[2025-10-13 05:45:47] 2025-10-13 09:45:03,685 | INFO     | pgrp: 2025565
[2025-10-13 05:45:47] 2025-10-13 09:45:03,685 | INFO     | corecount: 9
[2025-10-13 05:45:47] 2025-10-13 09:45:03,685 | INFO     | event service: False
[2025-10-13 05:45:47] 2025-10-13 09:45:03,685 | INFO     | sizes: {0: 2348029, 1: 2348714, 2: 2348913, 14: 2348913, 25: 2348941, 33: 2349231, 36: 2349415, 21968: 2382947, 21969: 2382946, 21983: 2392056, 22027: 2392194}
[2025-10-13 05:45:47] 2025-10-13 09:45:03,685 | INFO     | --------------------------------------------------
[2025-10-13 05:45:47] 2025-10-13 09:45:03,685 | INFO     | 
[2025-10-13 05:45:47] 2025-10-13 09:45:03,685 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 05:45:47] 2025-10-13 09:45:03,863 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 05:45:47] 2025-10-13 09:45:03,863 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 05:45:47] 2025-10-13 09:45:03,863 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 05:45:47] 2025-10-13 09:45:03,864 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 05:45:47] 2025-10-13 09:45:03,864 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 05:45:47] 2025-10-13 09:45:03,864 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 05:45:47] 2025-10-13 09:45:03,864 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 05:45:47] 2025-10-13 09:45:03,864 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 05:45:47] 2025-10-13 09:45:03,864 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 05:45:47] 2025-10-13 09:45:03,864 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 05:45:47] 2025-10-13 09:45:03,864 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 05:45:47] 2025-10-13 09:45:03,864 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 05:45:47] 2025-10-13 09:45:03,864 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 05:45:47] 2025-10-13 09:45:03,864 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 05:45:47] 2025-10-13 09:45:03,864 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 05:45:47] 2025-10-13 09:45:03,864 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 05:45:47] 2025-10-13 09:45:03,864 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 05:45:47] 2025-10-13 09:45:03,865 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 05:45:47] 2025-10-13 09:45:03,865 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 05:45:47] 2025-10-13 09:45:03,865 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 05:45:47] 2025-10-13 09:45:03,865 | INFO     | job 6840714673 has completed (purged errors)
[2025-10-13 05:45:47] 2025-10-13 09:45:03,865 | INFO     | overall cleanup function is called
[2025-10-13 05:45:47] 2025-10-13 09:45:04,880 | INFO     | --- collectZombieJob: --- 10, [2025565]
[2025-10-13 05:45:47] 2025-10-13 09:45:04,880 | INFO     | zombie collector waiting for pid 2025565
[2025-10-13 05:45:47] 2025-10-13 09:45:04,880 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 05:45:47] 2025-10-13 09:45:04,881 | INFO     | collected zombie processes
[2025-10-13 05:45:47] 2025-10-13 09:45:04,881 | INFO     | will attempt to kill all subprocesses of pid=2025565
[2025-10-13 05:45:47] 2025-10-13 09:45:05,318 | INFO     | PID=2011230 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 05:45:47] 2025-10-13 09:45:05,318 | INFO     | .. there are 56 such processes running
[2025-10-13 05:45:47] 2025-10-13 09:45:07,811 | INFO     | process IDs to be killed: [2025565] (in reverse order)
[2025-10-13 05:45:47] 2025-10-13 09:45:09,021 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 05:45:47] 2025-10-13 09:45:09,021 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 05:45:47] 2025-10-13 09:45:09,141 | INFO     | did not find any defunct processes belonging to 2025565
[2025-10-13 05:45:47] 2025-10-13 09:45:09,215 | INFO     | did not find any defunct processes belonging to 2025565
[2025-10-13 05:45:47] 2025-10-13 09:45:09,230 | INFO     | ready for new job
[2025-10-13 05:45:47] 2025-10-13 09:45:09,230 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 05:45:47] 2025-10-13 09:45:09,233 | INFO     | ***************************************
[2025-10-13 05:45:47] 2025-10-13 09:45:09,248 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 05:45:47] 2025-10-13 09:45:09,248 | INFO     | ***************************************
[2025-10-13 05:45:47] 2025-10-13 09:45:09,249 | INFO     | 
[2025-10-13 05:45:47] 2025-10-13 09:45:09,287 | INFO     | architecture information:
[2025-10-13 05:45:47] 2025-10-13 09:45:09,309 | INFO     | executing command: cat /etc/os-release
[2025-10-13 05:45:47] 2025-10-13 09:45:09,435 | INFO     | cat /etc/os-release:
[2025-10-13 05:45:47] NAME="CentOS Linux"
[2025-10-13 05:45:47] VERSION="7 (Core)"
[2025-10-13 05:45:47] ID="centos"
[2025-10-13 05:45:47] ID_LIKE="rhel fedora"
[2025-10-13 05:45:47] VERSION_ID="7"
[2025-10-13 05:45:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 05:45:47] ANSI_COLOR="0;31"
[2025-10-13 05:45:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 05:45:47] HOME_URL="https://www.centos.org/"
[2025-10-13 05:45:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 05:45:47] 
[2025-10-13 05:45:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 05:45:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 05:45:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 05:45:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 05:45:47] 
[2025-10-13 05:45:47] 2025-10-13 09:45:09,436 | INFO     | ***************************************
[2025-10-13 05:45:47] 2025-10-13 09:45:09,946 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 05:45:47] 2025-10-13 09:45:10,153 | INFO     | sufficient remaining disk space (415975342080 B)
[2025-10-13 05:45:47] 2025-10-13 09:45:10,153 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 05:45:47] 2025-10-13 09:45:10,153 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 05:45:47] 2025-10-13 09:45:10,153 | INFO     | update_server=False
[2025-10-13 05:45:47] 2025-10-13 09:45:10,153 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 05:45:47] 2025-10-13 09:45:10,665 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:45:47] 2025-10-13 09:45:10,666 | INFO     | aborting loop
[2025-10-13 05:45:47] 2025-10-13 09:45:10,784 | INFO     | all data control threads have been joined
[2025-10-13 05:45:47] 2025-10-13 09:45:11,013 | INFO     | all job control threads have been joined
[2025-10-13 05:45:47] 2025-10-13 09:45:11,160 | INFO     | [job] retrieve thread has finished
[2025-10-13 05:45:47] 2025-10-13 09:45:11,275 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 05:45:47] 2025-10-13 09:45:11,578 | INFO     | all payload control threads have been joined
[2025-10-13 05:45:47] 2025-10-13 09:45:11,618 | INFO     | [payload] validate_post thread has finished
[2025-10-13 05:45:47] 2025-10-13 09:45:11,619 | INFO     | [payload] failed_post thread has finished
[2025-10-13 05:45:47] 2025-10-13 09:45:11,671 | INFO     | [job] job monitor thread has finished
[2025-10-13 05:45:47] 2025-10-13 09:45:11,718 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 05:45:47] 2025-10-13 09:45:11,790 | INFO     | [data] control thread has finished
[2025-10-13 05:45:47] 2025-10-13 09:45:12,019 | INFO     | [job] control thread has finished
[2025-10-13 05:45:47] 2025-10-13 09:45:12,556 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 05:45:47] 2025-10-13 09:45:12,561 | INFO     | [job] validate thread has finished
[2025-10-13 05:45:47] 2025-10-13 09:45:12,584 | INFO     | [payload] control thread has finished
[2025-10-13 05:45:47] 2025-10-13 09:45:12,627 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 05:45:47] 2025-10-13 09:45:12,628 | INFO     | [data] copytool_in thread has finished
[2025-10-13 05:45:47] 2025-10-13 09:45:12,631 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 05:45:47] 2025-10-13 09:45:12,635 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 05:45:47] 2025-10-13 09:45:12,732 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:45:47] 2025-10-13 09:45:13,282 | INFO     | [data] copytool_out thread has finished
[2025-10-13 05:45:47] 2025-10-13 09:45:13,740 | INFO     | [job] queue monitor thread has finished
[2025-10-13 05:45:47] 2025-10-13 09:45:15,743 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 05:45:47] 2025-10-13 09:45:26,422 | INFO     | [monitor] cgroup control has ended
[2025-10-13 05:45:47] 2025-10-13 09:45:27,720 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139985404995392)>', '<ExcThread(monitor, started 139984375895808)>']
[2025-10-13 05:45:47] 2025-10-13 09:45:32,746 | INFO     | all workflow threads have been joined
[2025-10-13 05:45:47] 2025-10-13 09:45:32,746 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 05:45:47] 2025-10-13 09:45:32,747 | INFO     | traces error code: 0
[2025-10-13 05:45:47] 2025-10-13 09:45:32,747 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 05:45:47] 2025-10-13 09:45:44,649 | INFO     | PID=2011230 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 05:45:47] 2025-10-13 09:45:44,654 | INFO     | .. there are 56 such processes running
[2025-10-13 05:45:47] 2025-10-13 09:45:44,655 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 05:45:47] 2025-10-13 09:45:44,655 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 05:45:47] 2025-10-13 09:45:44,655 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 05:45:47] 2025-10-13 09:45:44,655 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 05:45:47] 2025-10-13 09:45:44,655 | CRITICAL | thread 'MainThread' is not alive
[2025-10-13 05:45:47] 2025-10-13 09:45:44,655 | INFO     | [monitor] control thread has ended
[2025-10-13 05:45:47] 2025-10-13 09:45:45,456 [wrapper] ==== pilot stdout END ====
[2025-10-13 05:45:47] 2025-10-13 09:45:45,476 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 05:45:47] 2025-10-13 09:45:45,499 [wrapper] pilotpid: 2011230
[2025-10-13 05:45:47] 2025-10-13 09:45:45,514 [wrapper] Pilot exit status: 0
[2025-10-13 05:45:47] 2025-10-13 09:45:45,622 [wrapper] pandaids: 6840714673
[2025-10-13 05:45:47] 2025-10-13 09:45:45,943 [wrapper] cleanup supervisor_pilot 3351528 2011231
[2025-10-13 05:45:47] 2025-10-13 09:45:45,962 [wrapper] Test setup, not cleaning
[2025-10-13 05:45:47] 2025-10-13 09:45:45,978 [wrapper] apfmon messages muted
[2025-10-13 05:45:47] 2025-10-13 09:45:46,042 [wrapper] ==== wrapper stdout END ====
[2025-10-13 05:45:47] 2025-10-13 09:45:46,054 [wrapper] ==== wrapper stderr END ====
[2025-10-13 05:45:47]  *** Error codes and diagnostics ***
[2025-10-13 05:45:47]     "exeErrorCode": 0,
[2025-10-13 05:45:47]     "exeErrorDiag": "",
[2025-10-13 05:45:47]     "pilotErrorCode": 0,
[2025-10-13 05:45:47]     "pilotErrorDiag": "",
[2025-10-13 05:45:47]  *** Listing of results directory ***
[2025-10-13 05:45:47] total 411844
[2025-10-13 05:45:47] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 15:50 pilot3.tar.gz
[2025-10-13 05:45:47] -rwx------. 1 boincer umatlas     36292 Oct 12 15:59 runpilot2-wrapper.sh
[2025-10-13 05:45:47] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 15:59 queuedata.json
[2025-10-13 05:45:47] -rw-r--r--. 1 boincer umatlas       100 Oct 12 23:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 05:45:47] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 23:35 run_atlas
[2025-10-13 05:45:47] -rw-r--r--. 1 boincer umatlas       105 Oct 12 23:35 job.xml
[2025-10-13 05:45:47] -rw-r--r--. 2 boincer umatlas 222627439 Oct 12 23:35 EVNT.46676267._004477.pool.root.1
[2025-10-13 05:45:47] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 23:35 start_atlas.sh
[2025-10-13 05:45:47] drwxrwx--x. 2 boincer umatlas        68 Oct 12 23:35 shared
[2025-10-13 05:45:47] -rw-r--r--. 2 boincer umatlas    569678 Oct 12 23:35 input.tar.gz
[2025-10-13 05:45:47] -rw-r--r--. 1 boincer umatlas         0 Oct 12 23:35 boinc_lockfile
[2025-10-13 05:45:47] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 23:35 pandaJob.out
[2025-10-13 05:45:47] -rw-------. 1 boincer umatlas    974373 Oct 12 23:36 agis_schedconf.cvmfs.json
[2025-10-13 05:45:47] drwx------. 5 boincer umatlas      4096 Oct 12 23:36 pilot3
[2025-10-13 05:45:47] -rw-------. 1 boincer umatlas 189387771 Oct 13 05:41 HITS.46676269._088069.pool.root.1
[2025-10-13 05:45:47] -rw-r--r--. 1 boincer umatlas       530 Oct 13 05:42 boinc_task_state.xml
[2025-10-13 05:45:47] -rw-------. 1 boincer umatlas      1053 Oct 13 05:44 memory_monitor_summary.json
[2025-10-13 05:45:47] -rw-------. 1 boincer umatlas   1560580 Oct 13 05:44 agis_ddmendpoints.agis.ALL.json
[2025-10-13 05:45:47] -rw-------. 1 boincer umatlas    541632 Oct 13 05:44 log.46676269._088069.job.log.tgz.1
[2025-10-13 05:45:47] -rw-------. 1 boincer umatlas      7821 Oct 13 05:45 heartbeat.json
[2025-10-13 05:45:47] -rw-------. 1 boincer umatlas        95 Oct 13 05:45 pilot_heartbeat.json
[2025-10-13 05:45:47] -rw-r--r--. 1 boincer umatlas      6796 Oct 13 05:45 init_data.xml
[2025-10-13 05:45:47] -rw-r--r--. 1 boincer umatlas        28 Oct 13 05:45 wrapper_checkpoint.txt
[2025-10-13 05:45:47] -rw-------. 1 boincer umatlas       893 Oct 13 05:45 pilotlog.txt
[2025-10-13 05:45:47] -rw-------. 1 boincer umatlas   2368114 Oct 13 05:45 log.46676269._088069.job.log.1
[2025-10-13 05:45:47] -rw-------. 1 boincer umatlas       357 Oct 13 05:45 output.list
[2025-10-13 05:45:47] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 05:45 boinc_mmap_file
[2025-10-13 05:45:47] -rw-r--r--. 1 boincer umatlas       620 Oct 13 05:45 runtime_log
[2025-10-13 05:45:47] -rw-------. 1 boincer umatlas   2928640 Oct 13 05:45 result.tar.gz
[2025-10-13 05:45:47] -rw-r--r--. 1 boincer umatlas      8699 Oct 13 05:45 runtime_log.err
[2025-10-13 05:45:47] -rw-------. 1 boincer umatlas       655 Oct 13 05:45 M7sMDm0OHS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmXtUMDmRSMPwn.diag
[2025-10-13 05:45:47] -rw-r--r--. 1 boincer umatlas     21136 Oct 13 05:45 stderr.txt
[2025-10-13 05:45:47] HITS file was successfully produced:
[2025-10-13 05:45:47] -rw-------. 1 boincer umatlas 189387771 Oct 13 05:41 shared/HITS.pool.root.1
[2025-10-13 05:45:47]  *** Contents of shared directory: ***
[2025-10-13 05:45:47] total 405804
[2025-10-13 05:45:47] -rw-r--r--. 2 boincer umatlas 222627439 Oct 12 23:35 ATLAS.root_0
[2025-10-13 05:45:47] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 23:35 start_atlas.sh
[2025-10-13 05:45:47] -rw-r--r--. 2 boincer umatlas    569678 Oct 12 23:35 input.tar.gz
[2025-10-13 05:45:47] -rw-------. 1 boincer umatlas 189387771 Oct 13 05:41 HITS.pool.root.1
[2025-10-13 05:45:47] -rw-------. 1 boincer umatlas   2928640 Oct 13 05:45 result.tar.gz
05:45:48 (2000070): run_atlas exited; CPU time 45874.689080
05:45:48 (2000070): called boinc_finish(0)

</stderr_txt>
]]>

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