Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
22:16:48 (32549): wrapper (7.7.26015): starting
22:16:48 (32549): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 22:16:48] Arguments: --nthreads 12
[2025-10-12 22:16:48] Threads: 12
[2025-10-12 22:16:48] Checking for CVMFS
[2025-10-12 22:16:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 22:16:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 22:16:49] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 22:16:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 22:16:49] 2.11.2.0 2981 223664 95304 151645 3 9 15412863 20275200 1 130560 1 110307259 99.984 13495669 12514 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 22:16:49] CVMFS is ok
[2025-10-12 22:16:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 22:16:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 22:16:49] Further information can be found at the LHC@home message board.
[2025-10-12 22:16:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 22:16:49] Checking for apptainer binary...
[2025-10-12 22:16:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 22:16:49] Running /usr/bin/apptainer --version
[2025-10-12 22:16:49] apptainer version 1.3.2-1.el7
[2025-10-12 22:16:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 22:16:50] c-205-30.aglt2.org
[2025-10-12 22:16:50] apptainer works
[2025-10-12 22:16:50] Set ATHENA_PROC_NUMBER=12
[2025-10-12 22:16:50] Set ATHENA_CORE_NUMBER=12
[2025-10-12 22:16:50] Starting ATLAS job with PandaID=6840715326
[2025-10-12 22:16:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 23:27:18]  *** The last 200 lines of the pilot log: ***
[2025-10-12 23:27:18]  status_code=0
[2025-10-12 23:27:18]  storage_token=
[2025-10-12 23:27:18]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6840715326/log.46676269._088278.job.log.tgz.1
[2025-10-12 23:27:18]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/92/b2/log.46676269._088278.job.log.tgz.1
[2025-10-12 23:27:18]  workdir=None
[2025-10-12 23:27:18] ]
[2025-10-12 23:27:18] 2025-10-13 03:26:28,320 | INFO     | transferring file log.46676269._088278.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6840715326/log.46676269._088278.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 23:27:18] 2025-10-13 03:26:28,320 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6840715326/log.46676269._088278.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._088278.job
[2025-10-12 23:27:18] 2025-10-13 03:26:28,341 | INFO     | adding to output.list: log.46676269._088278.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/92/b2/log.46676269._088278.job.log.tg
[2025-10-12 23:27:18] 2025-10-13 03:26:28,342 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 23:27:18] 2025-10-13 03:26:28,343 | INFO     | summary of transferred files:
[2025-10-12 23:27:18] 2025-10-13 03:26:28,343 | INFO     |  -- lfn=log.46676269._088278.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 23:27:18] 2025-10-13 03:26:28,343 | INFO     | stage-out finished correctly
[2025-10-12 23:27:18] 2025-10-13 03:26:29,563 | INFO     | time since job start (4164s) is within the limit (172800.0s)
[2025-10-12 23:27:18] 2025-10-13 03:26:30,265 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 23:27:18] 2025-10-13 03:26:31,166 | INFO     | job 6840715326 has state=finished
[2025-10-12 23:27:18] 2025-10-13 03:26:31,166 | INFO     | preparing for final server update for job 6840715326 in state='finished'
[2025-10-12 23:27:18] 2025-10-13 03:26:31,178 | INFO     | this job has now completed (state=finished)
[2025-10-12 23:27:18] 2025-10-13 03:26:31,178 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 23:27:18] 2025-10-13 03:26:31,179 | INFO     | log transfer has been attempted: DONE
[2025-10-12 23:27:18] 2025-10-13 03:26:31,179 | INFO     | job 6840715326 has finished - writing final server update
[2025-10-12 23:27:18] 2025-10-13 03:26:31,179 | INFO     | total number of processed events: 400 (read)
[2025-10-12 23:27:18] 2025-10-13 03:26:31,180 | INFO     | executing command: lscpu
[2025-10-12 23:27:18] 2025-10-13 03:26:31,204 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 23:27:18] 2025-10-13 03:26:31,569 | INFO     | time since job start (4166s) is within the limit (172800.0s)
[2025-10-12 23:27:18] 2025-10-13 03:26:33,575 | INFO     | time since job start (4168s) is within the limit (172800.0s)
[2025-10-12 23:27:18] 2025-10-13 03:26:34,076 | WARNING  | process 10479 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 23:27:18] 2025-10-13 03:26:34,077 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840715326/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 23:27:18] 2025-10-13 03:26:34,165 | INFO     | number of running child processes to parent process 10479: 1
[2025-10-12 23:27:18] 2025-10-13 03:26:34,165 | INFO     | maximum number of monitored processes: 6
[2025-10-12 23:27:18] 2025-10-13 03:26:35,580 | INFO     | time since job start (4170s) is within the limit (172800.0s)
[2025-10-12 23:27:18] 2025-10-13 03:26:36,668 | INFO     | monitor loop #310: job 0:6840715326 is in state 'finished'
[2025-10-12 23:27:18] 2025-10-13 03:26:36,668 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 23:27:18] 2025-10-13 03:26:36,702 | INFO     | PID=4028 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 23:27:18] 2025-10-13 03:26:36,916 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 23:27:18] 2025-10-13 03:26:36,919 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-10-12 23:27:18] 2025-10-13 03:26:36,922 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840715326/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 23:27:18] 2025-10-13 03:26:36,922 | INFO     | extracted standard info from prmon json
[2025-10-12 23:27:18] 2025-10-13 03:26:36,922 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 23:27:18] 2025-10-13 03:26:36,923 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 23:27:18] 2025-10-13 03:26:36,923 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 23:27:18] 2025-10-13 03:26:36,923 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 23:27:18] 2025-10-13 03:26:36,925 | INFO     | fitting pss+swap vs Time
[2025-10-12 23:27:18] 2025-10-13 03:26:36,925 | INFO     | sum of square deviations: 70364110.0
[2025-10-12 23:27:18] 2025-10-13 03:26:36,925 | INFO     | sum of deviations: -2559230844.0
[2025-10-12 23:27:18] 2025-10-13 03:26:36,926 | INFO     | mean x: 1760323989.0
[2025-10-12 23:27:18] 2025-10-13 03:26:36,926 | INFO     | mean y: 2914310.770491803
[2025-10-12 23:27:18] 2025-10-13 03:26:36,926 | INFO     | -- intersect: 64028103403.362114
[2025-10-12 23:27:18] 2025-10-13 03:26:36,926 | INFO     | intersect: 64028103403.362114
[2025-10-12 23:27:18] 2025-10-13 03:26:36,926 | INFO     | chi2: 0.05670488613037727
[2025-10-12 23:27:18] 2025-10-13 03:26:36,927 | INFO     | -- intersect: 64028103403.362114
[2025-10-12 23:27:18] 2025-10-13 03:26:36,927 | INFO     | current memory leak: -36.37 B/s (using 61 data points, chi2=0.06)
[2025-10-12 23:27:18] 2025-10-13 03:26:36,927 | INFO     | could have reported an average CPU frequency of 2078 MHz (6 samples)
[2025-10-12 23:27:18] 2025-10-13 03:26:36,927 | INFO     | ..............................
[2025-10-12 23:27:18] 2025-10-13 03:26:36,927 | INFO     | . Timing measurements:
[2025-10-12 23:27:18] 2025-10-13 03:26:36,928 | INFO     | . get job = 0 s
[2025-10-12 23:27:18] 2025-10-13 03:26:36,928 | INFO     | . initial setup = 2 s
[2025-10-12 23:27:18] 2025-10-13 03:26:36,928 | INFO     | . payload setup = 7 s
[2025-10-12 23:27:18] 2025-10-13 03:26:36,928 | INFO     | . stage-in = 0 s
[2025-10-12 23:27:18] 2025-10-13 03:26:36,928 | INFO     | . payload execution = 4135 s
[2025-10-12 23:27:18] 2025-10-13 03:26:36,928 | INFO     | . stage-out = 0 s
[2025-10-12 23:27:18] 2025-10-13 03:26:36,928 | INFO     | . log creation = 0 s
[2025-10-12 23:27:18] 2025-10-13 03:26:36,928 | INFO     | ..............................
[2025-10-12 23:27:18] 2025-10-13 03:26:37,011 | INFO     | 
[2025-10-12 23:27:18] 2025-10-13 03:26:37,011 | INFO     | job summary report
[2025-10-12 23:27:18] 2025-10-13 03:26:37,011 | INFO     | --------------------------------------------------
[2025-10-12 23:27:18] 2025-10-13 03:26:37,011 | INFO     | PanDA job id: 6840715326
[2025-10-12 23:27:18] 2025-10-13 03:26:37,011 | INFO     | task id: 46676269
[2025-10-12 23:27:18] 2025-10-13 03:26:37,011 | INFO     | errors: (none)
[2025-10-12 23:27:18] 2025-10-13 03:26:37,012 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 23:27:18] 2025-10-13 03:26:37,012 | INFO     | pilot state: finished 
[2025-10-12 23:27:18] 2025-10-13 03:26:37,012 | INFO     | transexitcode: 0
[2025-10-12 23:27:18] 2025-10-13 03:26:37,012 | INFO     | exeerrorcode: 0
[2025-10-12 23:27:18] 2025-10-13 03:26:37,012 | INFO     | exeerrordiag: 
[2025-10-12 23:27:18] 2025-10-13 03:26:37,012 | INFO     | exitcode: 0
[2025-10-12 23:27:18] 2025-10-13 03:26:37,013 | INFO     | exitmsg: OK
[2025-10-12 23:27:18] 2025-10-13 03:26:37,013 | INFO     | cpuconsumptiontime: 44321 s
[2025-10-12 23:27:18] 2025-10-13 03:26:37,013 | INFO     | nevents: 400
[2025-10-12 23:27:18] 2025-10-13 03:26:37,013 | INFO     | neventsw: 0
[2025-10-12 23:27:18] 2025-10-13 03:26:37,013 | INFO     | pid: 10479
[2025-10-12 23:27:18] 2025-10-13 03:26:37,013 | INFO     | pgrp: 10479
[2025-10-12 23:27:18] 2025-10-13 03:26:37,014 | INFO     | corecount: 12
[2025-10-12 23:27:18] 2025-10-13 03:26:37,014 | INFO     | event service: False
[2025-10-12 23:27:18] 2025-10-13 03:26:37,014 | INFO     | sizes: {0: 2348857, 5: 2349119, 11: 2349175, 4145: 2375072, 4147: 2384070, 4148: 2384126, 4155: 2384448}
[2025-10-12 23:27:18] 2025-10-13 03:26:37,014 | INFO     | --------------------------------------------------
[2025-10-12 23:27:18] 2025-10-13 03:26:37,014 | INFO     | 
[2025-10-12 23:27:18] 2025-10-13 03:26:37,014 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 23:27:18] 2025-10-13 03:26:37,040 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 23:27:18] 2025-10-13 03:26:37,040 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 23:27:18] 2025-10-13 03:26:37,040 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 23:27:18] 2025-10-13 03:26:37,041 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 23:27:18] 2025-10-13 03:26:37,041 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 23:27:18] 2025-10-13 03:26:37,041 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 23:27:18] 2025-10-13 03:26:37,041 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 23:27:18] 2025-10-13 03:26:37,041 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 23:27:18] 2025-10-13 03:26:37,042 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 23:27:18] 2025-10-13 03:26:37,042 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 23:27:18] 2025-10-13 03:26:37,042 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 23:27:18] 2025-10-13 03:26:37,042 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 23:27:18] 2025-10-13 03:26:37,042 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 23:27:18] 2025-10-13 03:26:37,042 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 23:27:18] 2025-10-13 03:26:37,043 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 23:27:18] 2025-10-13 03:26:37,043 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 23:27:18] 2025-10-13 03:26:37,043 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 23:27:18] 2025-10-13 03:26:37,043 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 23:27:18] 2025-10-13 03:26:37,043 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 23:27:18] 2025-10-13 03:26:37,043 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 23:27:18] 2025-10-13 03:26:37,044 | INFO     | job 6840715326 has completed (purged errors)
[2025-10-12 23:27:18] 2025-10-13 03:26:37,044 | INFO     | overall cleanup function is called
[2025-10-12 23:27:18] 2025-10-13 03:26:38,052 | INFO     | --- collectZombieJob: --- 10, [10479]
[2025-10-12 23:27:18] 2025-10-13 03:26:38,053 | INFO     | zombie collector waiting for pid 10479
[2025-10-12 23:27:18] 2025-10-13 03:26:38,053 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 23:27:18] 2025-10-13 03:26:38,053 | INFO     | collected zombie processes
[2025-10-12 23:27:18] 2025-10-13 03:26:38,053 | INFO     | will attempt to kill all subprocesses of pid=10479
[2025-10-12 23:27:18] 2025-10-13 03:26:38,143 | INFO     | process IDs to be killed: [10479] (in reverse order)
[2025-10-12 23:27:18] 2025-10-13 03:26:38,195 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 23:27:18] 2025-10-13 03:26:38,195 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 23:27:18] 2025-10-13 03:26:38,197 | INFO     | did not find any defunct processes belonging to 10479
[2025-10-12 23:27:18] 2025-10-13 03:26:38,200 | INFO     | did not find any defunct processes belonging to 10479
[2025-10-12 23:27:18] 2025-10-13 03:26:38,200 | INFO     | ready for new job
[2025-10-12 23:27:18] 2025-10-13 03:26:38,200 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 23:27:18] 2025-10-13 03:26:38,201 | INFO     | ***************************************
[2025-10-12 23:27:18] 2025-10-13 03:26:38,201 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 23:27:18] 2025-10-13 03:26:38,201 | INFO     | ***************************************
[2025-10-12 23:27:18] 2025-10-13 03:26:38,202 | INFO     | 
[2025-10-12 23:27:18] 2025-10-13 03:26:38,202 | INFO     | architecture information:
[2025-10-12 23:27:18] 2025-10-13 03:26:38,203 | INFO     | executing command: cat /etc/os-release
[2025-10-12 23:27:18] 2025-10-13 03:26:38,217 | INFO     | cat /etc/os-release:
[2025-10-12 23:27:18] NAME="CentOS Linux"
[2025-10-12 23:27:18] VERSION="7 (Core)"
[2025-10-12 23:27:18] ID="centos"
[2025-10-12 23:27:18] ID_LIKE="rhel fedora"
[2025-10-12 23:27:18] VERSION_ID="7"
[2025-10-12 23:27:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 23:27:18] ANSI_COLOR="0;31"
[2025-10-12 23:27:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 23:27:18] HOME_URL="https://www.centos.org/"
[2025-10-12 23:27:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 23:27:18] 
[2025-10-12 23:27:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 23:27:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 23:27:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 23:27:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 23:27:18] 
[2025-10-12 23:27:18] 2025-10-13 03:26:38,217 | INFO     | ***************************************
[2025-10-12 23:27:18] 2025-10-13 03:26:38,720 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 23:27:18] 2025-10-13 03:26:38,737 | INFO     | sufficient remaining disk space (29370613760 B)
[2025-10-12 23:27:18] 2025-10-13 03:26:38,737 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 23:27:18] 2025-10-13 03:26:38,737 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 23:27:18] 2025-10-13 03:26:38,737 | INFO     | update_server=False
[2025-10-12 23:27:18] 2025-10-13 03:26:38,737 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 23:27:18] 2025-10-13 03:26:38,738 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:27:18] 2025-10-13 03:26:38,810 | INFO     | all job control threads have been joined
[2025-10-12 23:27:18] 2025-10-13 03:26:38,938 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 23:27:18] 2025-10-13 03:26:39,172 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 23:27:18] 2025-10-13 03:26:39,172 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 23:27:18] 2025-10-13 03:26:39,172 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:27:18] 2025-10-13 03:26:39,172 | INFO     | will abort loop
[2025-10-12 23:27:18] 2025-10-13 03:26:39,533 | INFO     | all data control threads have been joined
[2025-10-12 23:27:18] 2025-10-13 03:26:39,743 | INFO     | [job] retrieve thread has finished
[2025-10-12 23:27:18] 2025-10-13 03:26:39,743 | INFO     | [job] queue monitor thread has finished
[2025-10-12 23:27:18] 2025-10-13 03:26:39,774 | INFO     | [data] copytool_in thread has finished
[2025-10-12 23:27:18] 2025-10-13 03:26:39,813 | INFO     | [job] control thread has finished
[2025-10-12 23:27:18] 2025-10-13 03:26:40,178 | INFO     | [job] job monitor thread has finished
[2025-10-12 23:27:18] 2025-10-13 03:26:40,181 | INFO     | all payload control threads have been joined
[2025-10-12 23:27:18] 2025-10-13 03:26:40,195 | INFO     | [job] validate thread has finished
[2025-10-12 23:27:18] 2025-10-13 03:26:40,198 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 23:27:18] 2025-10-13 03:26:40,424 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 23:27:18] 2025-10-13 03:26:40,535 | INFO     | [data] control thread has finished
[2025-10-12 23:27:18] 2025-10-13 03:26:40,658 | INFO     | [payload] failed_post thread has finished
[2025-10-12 23:27:18] 2025-10-13 03:26:40,832 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 23:27:18] 2025-10-13 03:26:40,853 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 23:27:18] 2025-10-13 03:26:40,943 | INFO     | [data] copytool_out thread has finished
[2025-10-12 23:27:18] 2025-10-13 03:26:41,187 | INFO     | [payload] control thread has finished
[2025-10-12 23:27:18] 2025-10-13 03:26:41,221 | INFO     | [payload] validate_post thread has finished
[2025-10-12 23:27:18] 2025-10-13 03:26:44,859 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 23:27:18] 2025-10-13 03:26:49,239 | INFO     | job.realtimelogging is not enabled
[2025-10-12 23:27:18] 2025-10-13 03:26:50,244 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 23:27:18] 2025-10-13 03:27:08,906 | INFO     | PID=4028 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 23:27:18] 2025-10-13 03:27:08,906 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 23:27:18] 2025-10-13 03:27:08,906 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 23:27:18] 2025-10-13 03:27:08,906 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 23:27:18] 2025-10-13 03:27:11,732 | INFO     | [monitor] cgroup control has ended
[2025-10-12 23:27:18] 2025-10-13 03:27:13,000 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139673650583360)>', '<ExcThread(monitor, started 139672898479872)>']
[2025-10-12 23:27:18] 2025-10-13 03:27:13,932 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 23:27:18] 2025-10-13 03:27:13,932 | INFO     | [monitor] control thread has ended
[2025-10-12 23:27:18] 2025-10-13 03:27:18,025 | INFO     | all workflow threads have been joined
[2025-10-12 23:27:18] 2025-10-13 03:27:18,026 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 23:27:18] 2025-10-13 03:27:18,028 | INFO     | traces error code: 0
[2025-10-12 23:27:18] 2025-10-13 03:27:18,029 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 23:27:18] 2025-10-13 03:27:18,125 [wrapper] ==== pilot stdout END ====
[2025-10-12 23:27:18] 2025-10-13 03:27:18,128 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 23:27:18] 2025-10-13 03:27:18,132 [wrapper] pilotpid: 4028
[2025-10-12 23:27:18] 2025-10-13 03:27:18,136 [wrapper] Pilot exit status: 0
[2025-10-12 23:27:18] 2025-10-13 03:27:18,151 [wrapper] pandaids: 6840715326
[2025-10-12 23:27:18] 2025-10-13 03:27:18,188 [wrapper] cleanup supervisor_pilot 26612 4029
[2025-10-12 23:27:18] 2025-10-13 03:27:18,192 [wrapper] Test setup, not cleaning
[2025-10-12 23:27:18] 2025-10-13 03:27:18,196 [wrapper] apfmon messages muted
[2025-10-12 23:27:18] 2025-10-13 03:27:18,199 [wrapper] ==== wrapper stdout END ====
[2025-10-12 23:27:18] 2025-10-13 03:27:18,203 [wrapper] ==== wrapper stderr END ====
[2025-10-12 23:27:18]  *** Error codes and diagnostics ***
[2025-10-12 23:27:18]     "exeErrorCode": 0,
[2025-10-12 23:27:18]     "exeErrorDiag": "",
[2025-10-12 23:27:18]     "pilotErrorCode": 0,
[2025-10-12 23:27:18]     "pilotErrorDiag": "",
[2025-10-12 23:27:18]  *** Listing of results directory ***
[2025-10-12 23:27:18] total 405268
[2025-10-12 23:27:18] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 15:50 pilot3.tar.gz
[2025-10-12 23:27:18] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 16:05 queuedata.json
[2025-10-12 23:27:18] -rwx------ 1 boincer umatlas     36292 Oct 12 16:06 runpilot2-wrapper.sh
[2025-10-12 23:27:18] -rw-r--r-- 1 boincer umatlas       100 Oct 12 22:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 23:27:18] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 22:16 run_atlas
[2025-10-12 23:27:18] -rw-r--r-- 1 boincer umatlas       105 Oct 12 22:16 job.xml
[2025-10-12 23:27:18] -rw-r--r-- 2 boincer umatlas 221971535 Oct 12 22:16 EVNT.46676267._004485.pool.root.1
[2025-10-12 23:27:18] -rw-r--r-- 2 boincer umatlas    569679 Oct 12 22:16 input.tar.gz
[2025-10-12 23:27:18] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 22:16 start_atlas.sh
[2025-10-12 23:27:18] drwxrwx--x 2 boincer umatlas      4096 Oct 12 22:16 shared
[2025-10-12 23:27:18] -rw-r--r-- 1 boincer umatlas         0 Oct 12 22:16 boinc_lockfile
[2025-10-12 23:27:18] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 22:16 pandaJob.out
[2025-10-12 23:27:18] -rw------- 1 boincer umatlas    974373 Oct 12 22:17 agis_schedconf.cvmfs.json
[2025-10-12 23:27:18] -rw------- 1 boincer umatlas   1560580 Oct 12 22:17 agis_ddmendpoints.agis.ALL.json
[2025-10-12 23:27:18] drwx------ 5 boincer umatlas      4096 Oct 12 22:17 pilot3
[2025-10-12 23:27:18] -rw-r--r-- 1 boincer umatlas      5953 Oct 12 23:22 init_data.xml
[2025-10-12 23:27:18] -rw------- 1 boincer umatlas 187128357 Oct 12 23:25 HITS.46676269._088278.pool.root.1
[2025-10-12 23:27:18] -rw-r--r-- 1 boincer umatlas       529 Oct 12 23:26 boinc_task_state.xml
[2025-10-12 23:27:18] -rw------- 1 boincer umatlas      1050 Oct 12 23:26 memory_monitor_summary.json
[2025-10-12 23:27:18] -rw------- 1 boincer umatlas    390455 Oct 12 23:26 log.46676269._088278.job.log.tgz.1
[2025-10-12 23:27:18] -rw------- 1 boincer umatlas      7855 Oct 12 23:26 heartbeat.json
[2025-10-12 23:27:18] -rw------- 1 boincer umatlas        95 Oct 12 23:27 pilot_heartbeat.json
[2025-10-12 23:27:18] -rw-r--r-- 1 boincer umatlas        27 Oct 12 23:27 wrapper_checkpoint.txt
[2025-10-12 23:27:18] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 23:27 boinc_mmap_file
[2025-10-12 23:27:18] -rw------- 1 boincer umatlas      5003 Oct 12 23:27 pilotlog.txt
[2025-10-12 23:27:18] -rw------- 1 boincer umatlas    608896 Oct 12 23:27 log.46676269._088278.job.log.1
[2025-10-12 23:27:18] -rw------- 1 boincer umatlas       357 Oct 12 23:27 output.list
[2025-10-12 23:27:18] -rw-r--r-- 1 boincer umatlas       620 Oct 12 23:27 runtime_log
[2025-10-12 23:27:18] -rw------- 1 boincer umatlas   1013760 Oct 12 23:27 result.tar.gz
[2025-10-12 23:27:18] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 23:27 runtime_log.err
[2025-10-12 23:27:18] -rw------- 1 boincer umatlas       659 Oct 12 23:27 LTHNDm2VHS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm1NlNDmyo6osm.diag
[2025-10-12 23:27:18] -rw-r--r-- 1 boincer umatlas     22143 Oct 12 23:27 stderr.txt
[2025-10-12 23:27:18] HITS file was successfully produced:
[2025-10-12 23:27:18] -rw------- 1 boincer umatlas 187128357 Oct 12 23:25 shared/HITS.pool.root.1
[2025-10-12 23:27:18]  *** Contents of shared directory: ***
[2025-10-12 23:27:18] total 401088
[2025-10-12 23:27:18] -rw-r--r-- 2 boincer umatlas 221971535 Oct 12 22:16 ATLAS.root_0
[2025-10-12 23:27:18] -rw-r--r-- 2 boincer umatlas    569679 Oct 12 22:16 input.tar.gz
[2025-10-12 23:27:18] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 22:16 start_atlas.sh
[2025-10-12 23:27:18] -rw------- 1 boincer umatlas 187128357 Oct 12 23:25 HITS.pool.root.1
[2025-10-12 23:27:18] -rw------- 1 boincer umatlas   1013760 Oct 12 23:27 result.tar.gz
23:27:20 (32549): run_atlas exited; CPU time 44294.248577
23:27:20 (32549): called boinc_finish(0)

</stderr_txt>
]]>

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