Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:39:16 (3923110): wrapper (7.7.26015): starting
14:39:16 (3923110): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 14:39:16] Arguments: --nthreads 4
[2025-10-13 14:39:16] Threads: 4
[2025-10-13 14:39:16] Checking for CVMFS
[2025-10-13 14:39:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 14:39:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 14:39:16] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 14:39:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 14:39:17] 2.9.2.0 2829015 2824 92504 151661 0 57 29879362 36864000 0 130560 0 2901323 99.993 101569 773 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 14:39:17] CVMFS is ok
[2025-10-13 14:39:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 14:39:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 14:39:17] Further information can be found at the LHC@home message board.
[2025-10-13 14:39:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 14:39:17] Checking for apptainer binary...
[2025-10-13 14:39:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 14:39:17] Running /usr/bin/apptainer --version
[2025-10-13 14:39:17] apptainer version 1.4.1-1.1
[2025-10-13 14:39:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 14:39:17] thA369a
[2025-10-13 14:39:17] apptainer works
[2025-10-13 14:39:17] Set ATHENA_PROC_NUMBER=4
[2025-10-13 14:39:17] Set ATHENA_CORE_NUMBER=4
[2025-10-13 14:39:17] Starting ATLAS job with PandaID=6840834793
[2025-10-13 14:39:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
15:25:24 (3940673): wrapper (7.7.26015): starting
15:25:24 (3940673): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 15:25:24] Arguments: --nthreads 4
[2025-10-13 15:25:24] Threads: 4
[2025-10-13 15:25:24] This job has been restarted, cleaning up previous attempt
[2025-10-13 15:25:24] Checking for CVMFS
[2025-10-13 15:25:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 15:25:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 15:25:26] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 15:25:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 15:25:26] 2.9.2.0 3940869 0 29992 151662 3 1 29882261 36864000 0 130560 0 0 0.000 1291 2001 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 15:25:26] CVMFS is ok
[2025-10-13 15:25:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 15:25:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 15:25:26] Further information can be found at the LHC@home message board.
[2025-10-13 15:25:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 15:25:26] Checking for apptainer binary...
[2025-10-13 15:25:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 15:25:26] Running /usr/bin/apptainer --version
[2025-10-13 15:25:26] apptainer version 1.4.1-1.1
[2025-10-13 15:25:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 15:25:26] thA369a
[2025-10-13 15:25:26] apptainer works
[2025-10-13 15:25:26] Set ATHENA_PROC_NUMBER=4
[2025-10-13 15:25:26] Set ATHENA_CORE_NUMBER=4
[2025-10-13 15:25:26] Starting ATLAS job with PandaID=6840834793
[2025-10-13 15:25:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
16:03:45 (3960926): wrapper (7.7.26015): starting
16:03:45 (3960926): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 16:03:45] Arguments: --nthreads 4
[2025-10-13 16:03:45] Threads: 4
[2025-10-13 16:03:45] This job has been restarted, cleaning up previous attempt
[2025-10-13 16:03:45] Checking for CVMFS
[2025-10-13 16:03:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 16:03:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 16:03:45] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 16:03:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 16:03:46] 2.9.2.0 3940869 38 47932 151662 1 188 29883211 36864001 0 130560 0 53896 99.996 1364 599 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 16:03:46] CVMFS is ok
[2025-10-13 16:03:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 16:03:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 16:03:46] Further information can be found at the LHC@home message board.
[2025-10-13 16:03:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 16:03:46] Checking for apptainer binary...
[2025-10-13 16:03:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 16:03:46] Running /usr/bin/apptainer --version
[2025-10-13 16:03:46] apptainer version 1.4.1-1.1
[2025-10-13 16:03:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 16:03:46] thA369a
[2025-10-13 16:03:46] apptainer works
[2025-10-13 16:03:46] Set ATHENA_PROC_NUMBER=4
[2025-10-13 16:03:46] Set ATHENA_CORE_NUMBER=4
[2025-10-13 16:03:46] Starting ATLAS job with PandaID=6840834793
[2025-10-13 16:03:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 17:06:08]  *** The last 200 lines of the pilot log: ***
[2025-10-13 17:06:08] 
[2025-10-13 17:06:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 17:06:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 17:06:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 17:06:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 17:06:08] 
[2025-10-13 17:06:08] 2025-10-13 15:05:49,972 | INFO     | ***************************************
[2025-10-13 17:06:08] 2025-10-13 15:05:50,475 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 17:06:08] 2025-10-13 15:05:50,487 | INFO     | sufficient remaining disk space (230057574400 B)
[2025-10-13 17:06:08] 2025-10-13 15:05:50,487 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 17:06:08] 2025-10-13 15:05:50,487 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 17:06:08] 2025-10-13 15:05:50,487 | INFO     | update_server=False
[2025-10-13 17:06:08] 2025-10-13 15:05:50,488 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 17:06:08] 2025-10-13 15:05:50,488 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 17:06:08] 2025-10-13 15:05:50,488 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-13 17:06:08] 2025-10-13 15:05:50,488 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 17:06:08] 2025-10-13 15:05:50,488 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 17:06:08] 2025-10-13 15:05:50,488 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 17:06:08] 2025-10-13 15:05:50,488 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 17:06:08] 2025-10-13 15:05:50,488 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 17:06:08] 2025-10-13 15:05:50,596 | INFO     | all data control threads have been joined
[2025-10-13 17:06:08] 2025-10-13 15:05:50,812 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 17:06:08] 2025-10-13 15:05:50,812 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 17:06:08] 2025-10-13 15:05:50,812 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 17:06:08] 2025-10-13 15:05:50,812 | INFO     | will abort loop
[2025-10-13 17:06:08] 2025-10-13 15:05:51,493 | INFO     | [job] retrieve thread has finished
[2025-10-13 17:06:08] 2025-10-13 15:05:51,493 | INFO     | [job] queue monitor thread has finished
[2025-10-13 17:06:08] 2025-10-13 15:05:51,509 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 17:06:08] 2025-10-13 15:05:51,602 | INFO     | [data] control thread has finished
[2025-10-13 17:06:08] 2025-10-13 15:05:51,674 | INFO     | all payload control threads have been joined
[2025-10-13 17:06:08] 2025-10-13 15:05:51,747 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 17:06:08] 2025-10-13 15:05:51,818 | INFO     | [job] job monitor thread has finished
[2025-10-13 17:06:08] 2025-10-13 15:05:51,906 | INFO     | all job control threads have been joined
[2025-10-13 17:06:08] 2025-10-13 15:05:52,278 | INFO     | [payload] validate_post thread has finished
[2025-10-13 17:06:08] 2025-10-13 15:05:52,372 | INFO     | [data] copytool_in thread has finished
[2025-10-13 17:06:08] 2025-10-13 15:05:52,494 | INFO     | [data] copytool_out thread has finished
[2025-10-13 17:06:08] 2025-10-13 15:05:52,680 | INFO     | [payload] control thread has finished
[2025-10-13 17:06:08] 2025-10-13 15:05:52,712 | INFO     | [payload] failed_post thread has finished
[2025-10-13 17:06:08] 2025-10-13 15:05:52,882 | INFO     | [job] validate thread has finished
[2025-10-13 17:06:08] 2025-10-13 15:05:52,912 | INFO     | [job] control thread has finished
[2025-10-13 17:06:08] 2025-10-13 15:05:52,987 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 17:06:08] 2025-10-13 15:05:54,495 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 17:06:08] 2025-10-13 15:05:55,422 | INFO     | [monitor] cgroup control has ended
[2025-10-13 17:06:08] 2025-10-13 15:06:01,371 | INFO     | job.realtimelogging is not enabled
[2025-10-13 17:06:08] 2025-10-13 15:06:02,377 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 17:06:08] 2025-10-13 15:06:03,465 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140053356136256)>', '<ExcThread(monitor, started 140053003085568)>']
[2025-10-13 17:06:08] 2025-10-13 15:06:03,558 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 17:06:08] 2025-10-13 15:06:03,558 | INFO     | [monitor] control thread has ended
[2025-10-13 17:06:08] 2025-10-13 15:06:08,491 | INFO     | all workflow threads have been joined
[2025-10-13 17:06:08] 2025-10-13 15:06:08,491 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 17:06:08] 2025-10-13 15:06:08,492 | INFO     | traces error code: 0
[2025-10-13 17:06:08] 2025-10-13 15:06:08,492 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 17:06:08] 2025-10-13 15:06:08,546 [wrapper] ==== pilot stdout END ====
[2025-10-13 17:06:08] 2025-10-13 15:06:08,549 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 17:06:08] 2025-10-13 15:06:08,551 [wrapper] pilotpid: 3964707
[2025-10-13 17:06:08] 2025-10-13 15:06:08,554 [wrapper] Pilot exit status: 0
[2025-10-13 17:06:08] 2025-10-13 15:06:08,561 [wrapper] pandaids: 6840834793 6840834793 6840834793
[2025-10-13 17:06:08] 2025-10-13 15:06:08,577 [wrapper] cleanup supervisor_pilot 3980697 3964708
[2025-10-13 17:06:08] 2025-10-13 15:06:08,580 [wrapper] Test setup, not cleaning
[2025-10-13 17:06:08] 2025-10-13 15:06:08,582 [wrapper] apfmon messages muted
[2025-10-13 17:06:08] 2025-10-13 15:06:08,584 [wrapper] ==== wrapper stdout END ====
[2025-10-13 17:06:08] 2025-10-13 15:06:08,587 [wrapper] ==== wrapper stderr END ====
[2025-10-13 17:06:08]  *** Error codes and diagnostics ***
[2025-10-13 17:06:08]     "exeErrorCode": 0,
[2025-10-13 17:06:08]     "exeErrorDiag": "",
[2025-10-13 17:06:08]     "pilotErrorCode": 0,
[2025-10-13 17:06:08]     "pilotErrorDiag": "",
[2025-10-13 17:06:08]  *** Listing of results directory ***
[2025-10-13 17:06:08] total 632224
[2025-10-13 17:06:08] drwx------ 5 boinc boinc      4096 Oct  7 09:00 pilot3
[2025-10-13 17:06:08] -rw-r--r-- 1 boinc boinc    557409 Oct 12 23:31 pilot3.tar.gz
[2025-10-13 17:06:08] -rw-r--r-- 1 boinc boinc      5112 Oct 12 23:50 queuedata.json
[2025-10-13 17:06:08] -rwx------ 1 boinc boinc     36292 Oct 12 23:51 runpilot2-wrapper.sh
[2025-10-13 17:06:08] -rw-r--r-- 1 boinc boinc       100 Oct 13 14:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 17:06:08] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 14:39 run_atlas
[2025-10-13 17:06:08] -rw-r--r-- 1 boinc boinc       105 Oct 13 14:39 job.xml
[2025-10-13 17:06:08] -rw-r--r-- 3 boinc boinc 222702245 Oct 13 14:39 EVNT.46676267._004844.pool.root.1
[2025-10-13 17:06:08] -rw-r--r-- 3 boinc boinc 222702245 Oct 13 14:39 ATLAS.root_0
[2025-10-13 17:06:08] -rw-r--r-- 2 boinc boinc    569684 Oct 13 14:39 input.tar.gz
[2025-10-13 17:06:08] -rw-r--r-- 2 boinc boinc     15120 Oct 13 14:39 start_atlas.sh
[2025-10-13 17:06:08] drwxrwx--x 2 boinc boinc      4096 Oct 13 14:39 shared
[2025-10-13 17:06:08] -rw-r--r-- 1 boinc boinc         0 Oct 13 14:39 boinc_setup_complete
[2025-10-13 17:06:08] -rw-r--r-- 1 boinc boinc         0 Oct 13 14:39 boinc_lockfile
[2025-10-13 17:06:08] -rw------- 1 boinc boinc   1560580 Oct 13 14:39 agis_ddmendpoints.agis.ALL.json
[2025-10-13 17:06:08] -rw-r--r-- 1 boinc boinc      6450 Oct 13 16:03 init_data.xml
[2025-10-13 17:06:08] -rw-r--r-- 1 boinc boinc      2550 Oct 13 16:03 pandaJob.out
[2025-10-13 17:06:08] -rw------- 1 boinc boinc    972489 Oct 13 16:03 agis_schedconf.cvmfs.json
[2025-10-13 17:06:08] -rw------- 1 boinc boinc        97 Oct 13 17:05 pilot_heartbeat.json
[2025-10-13 17:06:08] -rw------- 1 boinc boinc 196495788 Oct 13 17:05 HITS.46676269._090386.pool.root.1
[2025-10-13 17:06:08] -rw-r--r-- 1 boinc boinc       530 Oct 13 17:05 boinc_task_state.xml
[2025-10-13 17:06:08] -rw------- 1 boinc boinc      1012 Oct 13 17:05 memory_monitor_summary.json
[2025-10-13 17:06:08] -rw------- 1 boinc boinc    241373 Oct 13 17:05 log.46676269._090386.job.log.tgz.1
[2025-10-13 17:06:08] -rw------- 1 boinc boinc      7740 Oct 13 17:05 heartbeat.json
[2025-10-13 17:06:08] -rw-r--r-- 1 boinc boinc      8192 Oct 13 17:05 boinc_mmap_file
[2025-10-13 17:06:08] -rw-r--r-- 1 boinc boinc        27 Oct 13 17:05 wrapper_checkpoint.txt
[2025-10-13 17:06:08] -rw------- 1 boinc boinc      4814 Oct 13 17:06 pilotlog.txt
[2025-10-13 17:06:08] -rw------- 1 boinc boinc    558943 Oct 13 17:06 log.46676269._090386.job.log.1
[2025-10-13 17:06:08] -rw------- 1 boinc boinc       357 Oct 13 17:06 output.list
[2025-10-13 17:06:08] -rw-r--r-- 1 boinc boinc       620 Oct 13 17:06 runtime_log
[2025-10-13 17:06:08] -rw------- 1 boinc boinc    819200 Oct 13 17:06 result.tar.gz
[2025-10-13 17:06:08] -rw-r--r-- 1 boinc boinc      8867 Oct 13 17:06 runtime_log.err
[2025-10-13 17:06:08] -rw------- 1 boinc boinc       909 Oct 13 17:06 iWIMDmd9IS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmq6UMDmfaRLFn.diag
[2025-10-13 17:06:08] -rw-r--r-- 1 boinc boinc     12731 Oct 13 17:06 stderr.txt
[2025-10-13 17:06:08] HITS file was successfully produced:
[2025-10-13 17:06:08] -rw------- 1 boinc boinc 196495788 Oct 13 17:05 shared/HITS.pool.root.1
[2025-10-13 17:06:08]  *** Contents of shared directory: ***
[2025-10-13 17:06:08] total 410760
[2025-10-13 17:06:08] -rw-r--r-- 3 boinc boinc 222702245 Oct 13 14:39 ATLAS.root_0
[2025-10-13 17:06:08] -rw-r--r-- 2 boinc boinc    569684 Oct 13 14:39 input.tar.gz
[2025-10-13 17:06:08] -rw-r--r-- 2 boinc boinc     15120 Oct 13 14:39 start_atlas.sh
[2025-10-13 17:06:08] -rw------- 1 boinc boinc 196495788 Oct 13 17:05 HITS.pool.root.1
[2025-10-13 17:06:08] -rw------- 1 boinc boinc    819200 Oct 13 17:06 result.tar.gz
17:06:10 (3960926): run_atlas exited; CPU time 13930.689952
17:06:10 (3960926): called boinc_finish(0)

</stderr_txt>
]]>

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