Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
22:12:13 (14378): wrapper (7.7.26015): starting
22:12:13 (14378): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 22:12:13] Arguments: --nthreads 8
[2025-10-12 22:12:13] Threads: 8
[2025-10-12 22:12:13] Checking for CVMFS
[2025-10-12 22:12:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 22:12:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 22:12:13] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 22:12:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 22:12:14] 2.11.2.0 23418 12489 103852 151644 2 185 13930910 18432000 1824 130560 0 18585539 99.996 414723 34792 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 22:12:14] CVMFS is ok
[2025-10-12 22:12:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 22:12:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 22:12:14] Further information can be found at the LHC@home message board.
[2025-10-12 22:12:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 22:12:14] Checking for apptainer binary...
[2025-10-12 22:12:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 22:12:14] Running /usr/bin/apptainer --version
[2025-10-12 22:12:14] apptainer version 1.3.2-1.el7
[2025-10-12 22:12:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 22:12:14] c-206-24.aglt2.org
[2025-10-12 22:12:14] apptainer works
[2025-10-12 22:12:14] Set ATHENA_PROC_NUMBER=8
[2025-10-12 22:12:14] Set ATHENA_CORE_NUMBER=8
[2025-10-12 22:12:14] Starting ATLAS job with PandaID=6840748852
[2025-10-12 22:12:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 01:12:00]  *** The last 200 lines of the pilot log: ***
[2025-10-13 01:12:00] 2025-10-13 05:11:28,626 | INFO     | -- intersect: -8812998168.322771
[2025-10-13 01:12:00] 2025-10-13 05:11:28,626 | INFO     | intersect: -8812998168.322771
[2025-10-13 01:12:00] 2025-10-13 05:11:28,626 | INFO     | chi2: 0.011059711784333983
[2025-10-13 01:12:00] 2025-10-13 05:11:28,626 | INFO     | current chi2=0.011059711784333983 (change=99.04303028534181 %)
[2025-10-13 01:12:00] 2025-10-13 05:11:28,627 | INFO     | sum of square deviations: 1418361477.5
[2025-10-13 01:12:00] 2025-10-13 05:11:28,628 | INFO     | sum of deviations: 4939973766.500001
[2025-10-13 01:12:00] 2025-10-13 05:11:28,628 | INFO     | mean x: 1760327210.5
[2025-10-13 01:12:00] 2025-10-13 05:11:28,629 | INFO     | mean y: 2489991.7168674697
[2025-10-13 01:12:00] 2025-10-13 05:11:28,629 | INFO     | -- intersect: -6128507203.47883
[2025-10-13 01:12:00] 2025-10-13 05:11:28,629 | INFO     | intersect: -6128507203.47883
[2025-10-13 01:12:00] 2025-10-13 05:11:28,629 | INFO     | chi2: 0.0015145666459403598
[2025-10-13 01:12:00] 2025-10-13 05:11:28,630 | INFO     | current chi2=0.0015145666459403598 (change=86.30555049286424 %)
[2025-10-13 01:12:00] 2025-10-13 05:11:28,630 | INFO     | sum of square deviations: 1294014960.0
[2025-10-13 01:12:00] 2025-10-13 05:11:28,631 | INFO     | sum of deviations: 3746985085.0
[2025-10-13 01:12:00] 2025-10-13 05:11:28,631 | INFO     | mean x: 1760327363.0
[2025-10-13 01:12:00] 2025-10-13 05:11:28,632 | INFO     | mean y: 2491452.6086956523
[2025-10-13 01:12:00] 2025-10-13 05:11:28,632 | INFO     | -- intersect: -5094760571.338833
[2025-10-13 01:12:00] 2025-10-13 05:11:28,632 | INFO     | intersect: -5094760571.338833
[2025-10-13 01:12:00] 2025-10-13 05:11:28,632 | INFO     | chi2: 0.0006690494294704142
[2025-10-13 01:12:00] 2025-10-13 05:11:28,633 | INFO     | current chi2=0.0006690494294704142 (change=55.825685765381635 %)
[2025-10-13 01:12:00] 2025-10-13 05:11:28,633 | INFO     | sum of square deviations: 1177156955.0
[2025-10-13 01:12:00] 2025-10-13 05:11:28,634 | INFO     | sum of deviations: 2988792569.500001
[2025-10-13 01:12:00] 2025-10-13 05:11:28,634 | INFO     | mean x: 1760327515.5
[2025-10-13 01:12:00] 2025-10-13 05:11:28,635 | INFO     | mean y: 2492438.467948718
[2025-10-13 01:12:00] 2025-10-13 05:11:28,635 | INFO     | -- intersect: -4466965755.586384
[2025-10-13 01:12:00] 2025-10-13 05:11:28,635 | INFO     | intersect: -4466965755.586384
[2025-10-13 01:12:00] 2025-10-13 05:11:28,635 | INFO     | chi2: 0.0003641753987763742
[2025-10-13 01:12:00] 2025-10-13 05:11:28,636 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6840748852: 3522158 B (within 2537553920 B limit)
[2025-10-13 01:12:00] 2025-10-13 05:11:28,636 | INFO     | current chi2=0.0003641753987763742 (change=45.56823715332408 %)
[2025-10-13 01:12:00] 2025-10-13 05:11:28,637 | INFO     | sum of square deviations: 1067554900.0
[2025-10-13 01:12:00] 2025-10-13 05:11:28,637 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6840748852/HITS.46676269._088418.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-13 01:12:00] 2025-10-13 05:11:28,638 | INFO     | sum of deviations: 2543697987.0
[2025-10-13 01:12:00] 2025-10-13 05:11:28,638 | INFO     | total size of present files: 0 B (workdir size: 3522158 B)
[2025-10-13 01:12:00] 2025-10-13 05:11:28,638 | INFO     | mean x: 1760327668.0
[2025-10-13 01:12:00] 2025-10-13 05:11:28,639 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6840748852/HITS.46676269._088418.pool.root.1 since it does not exist
[2025-10-13 01:12:00] 2025-10-13 05:11:28,639 | INFO     | mean y: 2493057.2317880793
[2025-10-13 01:12:00] 2025-10-13 05:11:28,639 | INFO     | -- intersect: -4191897269.253533
[2025-10-13 01:12:00] 2025-10-13 05:11:28,639 | INFO     | intersect: -4191897269.253533
[2025-10-13 01:12:00] 2025-10-13 05:11:28,640 | INFO     | chi2: 0.00031604566119369017
[2025-10-13 01:12:00] 2025-10-13 05:11:28,640 | INFO     | current chi2=0.00031604566119369017 (change=13.216087013125943 %)
[2025-10-13 01:12:00] 2025-10-13 05:11:28,640 | INFO     | left removable region: 50
[2025-10-13 01:12:00] 2025-10-13 05:11:28,641 | INFO     | sum of square deviations: 535786790.0
[2025-10-13 01:12:00] 2025-10-13 05:11:28,642 | INFO     | sum of deviations: 985055937.9999999
[2025-10-13 01:12:00] 2025-10-13 05:11:28,642 | INFO     | mean x: 1760328247.5
[2025-10-13 01:12:00] 2025-10-13 05:11:28,642 | INFO     | mean y: 2495336.1
[2025-10-13 01:12:00] 2025-10-13 05:11:28,642 | INFO     | -- intersect: -3233907325.169436
[2025-10-13 01:12:00] 2025-10-13 05:11:28,642 | INFO     | intersect: -3233907325.169436
[2025-10-13 01:12:00] 2025-10-13 05:11:28,643 | INFO     | chi2: 0.00020650097540703656
[2025-10-13 01:12:00] 2025-10-13 05:11:28,643 | INFO     | -- intersect: -3233907325.169436
[2025-10-13 01:12:00] 2025-10-13 05:11:28,643 | INFO     | current memory leak: 1.84 B/s (using 120 data points, chi2=0.00)
[2025-10-13 01:12:00] 2025-10-13 05:11:28,644 | INFO     | could have reported an average CPU frequency of 2426 MHz (9 samples)
[2025-10-13 01:12:00] 2025-10-13 05:11:28,645 | INFO     | ..............................
[2025-10-13 01:12:00] 2025-10-13 05:11:28,645 | INFO     | . Timing measurements:
[2025-10-13 01:12:00] 2025-10-13 05:11:28,645 | INFO     | . get job = 0 s
[2025-10-13 01:12:00] 2025-10-13 05:11:28,645 | INFO     | . initial setup = 2 s
[2025-10-13 01:12:00] 2025-10-13 05:11:28,645 | INFO     | . payload setup = 4 s
[2025-10-13 01:12:00] 2025-10-13 05:11:28,646 | INFO     | . stage-in = 0 s
[2025-10-13 01:12:00] 2025-10-13 05:11:28,646 | INFO     | . payload execution = 10714 s
[2025-10-13 01:12:00] 2025-10-13 05:11:28,646 | INFO     | . stage-out = 0 s
[2025-10-13 01:12:00] 2025-10-13 05:11:28,646 | INFO     | . log creation = 0 s
[2025-10-13 01:12:00] 2025-10-13 05:11:28,646 | INFO     | ..............................
[2025-10-13 01:12:00] 2025-10-13 05:11:28,747 | INFO     | 
[2025-10-13 01:12:00] 2025-10-13 05:11:28,747 | INFO     | job summary report
[2025-10-13 01:12:00] 2025-10-13 05:11:28,747 | INFO     | --------------------------------------------------
[2025-10-13 01:12:00] 2025-10-13 05:11:28,748 | INFO     | PanDA job id: 6840748852
[2025-10-13 01:12:00] 2025-10-13 05:11:28,748 | INFO     | task id: 46676269
[2025-10-13 01:12:00] 2025-10-13 05:11:28,748 | INFO     | errors: (none)
[2025-10-13 01:12:00] 2025-10-13 05:11:28,748 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 01:12:00] 2025-10-13 05:11:28,749 | INFO     | pilot state: finished 
[2025-10-13 01:12:00] 2025-10-13 05:11:28,749 | INFO     | transexitcode: 0
[2025-10-13 01:12:00] 2025-10-13 05:11:28,749 | INFO     | exeerrorcode: 0
[2025-10-13 01:12:00] 2025-10-13 05:11:28,750 | INFO     | exeerrordiag: 
[2025-10-13 01:12:00] 2025-10-13 05:11:28,750 | INFO     | exitcode: 0
[2025-10-13 01:12:00] 2025-10-13 05:11:28,750 | INFO     | exitmsg: OK
[2025-10-13 01:12:00] 2025-10-13 05:11:28,750 | INFO     | cpuconsumptiontime: 81405 s
[2025-10-13 01:12:00] 2025-10-13 05:11:28,750 | INFO     | nevents: 400
[2025-10-13 01:12:00] 2025-10-13 05:11:28,751 | INFO     | neventsw: 0
[2025-10-13 01:12:00] 2025-10-13 05:11:28,751 | INFO     | pid: 24500
[2025-10-13 01:12:00] 2025-10-13 05:11:28,751 | INFO     | pgrp: 24500
[2025-10-13 01:12:00] 2025-10-13 05:11:28,752 | INFO     | corecount: 8
[2025-10-13 01:12:00] 2025-10-13 05:11:28,752 | INFO     | event service: False
[2025-10-13 01:12:00] 2025-10-13 05:11:28,752 | INFO     | sizes: {0: 2348686, 1: 2348885, 4: 2349147, 12: 2349175, 10722: 2378033, 10723: 2387031, 10725: 2387215, 10729: 2387661}
[2025-10-13 01:12:00] 2025-10-13 05:11:28,752 | INFO     | --------------------------------------------------
[2025-10-13 01:12:00] 2025-10-13 05:11:28,753 | INFO     | 
[2025-10-13 01:12:00] 2025-10-13 05:11:28,753 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 01:12:00] 2025-10-13 05:11:28,772 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 01:12:00] 2025-10-13 05:11:28,773 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 01:12:00] 2025-10-13 05:11:28,773 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 01:12:00] 2025-10-13 05:11:28,773 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 01:12:00] 2025-10-13 05:11:28,773 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 01:12:00] 2025-10-13 05:11:28,774 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 01:12:00] 2025-10-13 05:11:28,774 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 01:12:00] 2025-10-13 05:11:28,774 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 01:12:00] 2025-10-13 05:11:28,774 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 01:12:00] 2025-10-13 05:11:28,775 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 01:12:00] 2025-10-13 05:11:28,775 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 01:12:00] 2025-10-13 05:11:28,775 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 01:12:00] 2025-10-13 05:11:28,775 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 01:12:00] 2025-10-13 05:11:28,776 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 01:12:00] 2025-10-13 05:11:28,776 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 01:12:00] 2025-10-13 05:11:28,776 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 01:12:00] 2025-10-13 05:11:28,776 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 01:12:00] 2025-10-13 05:11:28,777 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 01:12:00] 2025-10-13 05:11:28,777 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 01:12:00] 2025-10-13 05:11:28,777 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 01:12:00] 2025-10-13 05:11:28,777 | INFO     | job 6840748852 has completed (purged errors)
[2025-10-13 01:12:00] 2025-10-13 05:11:28,778 | INFO     | overall cleanup function is called
[2025-10-13 01:12:00] 2025-10-13 05:11:28,890 | INFO     | number of running child processes to parent process 24500: 1
[2025-10-13 01:12:00] 2025-10-13 05:11:28,890 | INFO     | maximum number of monitored processes: 6
[2025-10-13 01:12:00] 2025-10-13 05:11:28,891 | INFO     | aborting job monitoring since job object (job id=6840748852) has expired
[2025-10-13 01:12:00] 2025-10-13 05:11:29,787 | INFO     | --- collectZombieJob: --- 10, [24500]
[2025-10-13 01:12:00] 2025-10-13 05:11:29,787 | INFO     | zombie collector waiting for pid 24500
[2025-10-13 01:12:00] 2025-10-13 05:11:29,787 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 01:12:00] 2025-10-13 05:11:29,788 | INFO     | collected zombie processes
[2025-10-13 01:12:00] 2025-10-13 05:11:29,788 | INFO     | will attempt to kill all subprocesses of pid=24500
[2025-10-13 01:12:00] 2025-10-13 05:11:29,937 | INFO     | process IDs to be killed: [24500] (in reverse order)
[2025-10-13 01:12:00] 2025-10-13 05:11:29,983 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 01:12:00] 2025-10-13 05:11:29,984 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 01:12:00] 2025-10-13 05:11:29,986 | INFO     | did not find any defunct processes belonging to 24500
[2025-10-13 01:12:00] 2025-10-13 05:11:29,989 | INFO     | did not find any defunct processes belonging to 24500
[2025-10-13 01:12:00] 2025-10-13 05:11:29,989 | INFO     | ready for new job
[2025-10-13 01:12:00] 2025-10-13 05:11:29,989 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 01:12:00] 2025-10-13 05:11:29,990 | INFO     | ***************************************
[2025-10-13 01:12:00] 2025-10-13 05:11:29,990 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 01:12:00] 2025-10-13 05:11:29,990 | INFO     | ***************************************
[2025-10-13 01:12:00] 2025-10-13 05:11:29,991 | INFO     | 
[2025-10-13 01:12:00] 2025-10-13 05:11:29,991 | INFO     | architecture information:
[2025-10-13 01:12:00] 2025-10-13 05:11:29,992 | INFO     | executing command: cat /etc/os-release
[2025-10-13 01:12:00] 2025-10-13 05:11:30,003 | INFO     | cat /etc/os-release:
[2025-10-13 01:12:00] NAME="CentOS Linux"
[2025-10-13 01:12:00] VERSION="7 (Core)"
[2025-10-13 01:12:00] ID="centos"
[2025-10-13 01:12:00] ID_LIKE="rhel fedora"
[2025-10-13 01:12:00] VERSION_ID="7"
[2025-10-13 01:12:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 01:12:00] ANSI_COLOR="0;31"
[2025-10-13 01:12:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 01:12:00] HOME_URL="https://www.centos.org/"
[2025-10-13 01:12:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 01:12:00] 
[2025-10-13 01:12:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 01:12:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 01:12:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 01:12:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 01:12:00] 
[2025-10-13 01:12:00] 2025-10-13 05:11:30,004 | INFO     | ***************************************
[2025-10-13 01:12:00] 2025-10-13 05:11:30,507 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 01:12:00] 2025-10-13 05:11:30,523 | INFO     | sufficient remaining disk space (27916238848 B)
[2025-10-13 01:12:00] 2025-10-13 05:11:30,523 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 01:12:00] 2025-10-13 05:11:30,523 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 01:12:00] 2025-10-13 05:11:30,523 | INFO     | update_server=False
[2025-10-13 01:12:00] 2025-10-13 05:11:30,524 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 01:12:00] 2025-10-13 05:11:30,524 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:12:00] 2025-10-13 05:11:30,524 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:12:00] 2025-10-13 05:11:30,524 | INFO     | aborting loop
[2025-10-13 01:12:00] 2025-10-13 05:11:31,027 | INFO     | all job control threads have been joined
[2025-10-13 01:12:00] 2025-10-13 05:11:31,308 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 01:12:00] 2025-10-13 05:11:31,352 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 01:12:00] 2025-10-13 05:11:31,401 | INFO     | all data control threads have been joined
[2025-10-13 01:12:00] 2025-10-13 05:11:31,529 | INFO     | [job] retrieve thread has finished
[2025-10-13 01:12:00] 2025-10-13 05:11:31,530 | INFO     | [job] job monitor thread has finished
[2025-10-13 01:12:00] 2025-10-13 05:11:31,530 | INFO     | [job] queue monitor thread has finished
[2025-10-13 01:12:00] 2025-10-13 05:11:31,533 | INFO     | [data] copytool_in thread has finished
[2025-10-13 01:12:00] 2025-10-13 05:11:31,817 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 01:12:00] 2025-10-13 05:11:31,963 | INFO     | all payload control threads have been joined
[2025-10-13 01:12:00] 2025-10-13 05:11:31,980 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 01:12:00] 2025-10-13 05:11:32,032 | INFO     | [job] control thread has finished
[2025-10-13 01:12:00] 2025-10-13 05:11:32,287 | INFO     | [payload] failed_post thread has finished
[2025-10-13 01:12:00] 2025-10-13 05:11:32,366 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 01:12:00] 2025-10-13 05:11:32,406 | INFO     | [data] control thread has finished
[2025-10-13 01:12:00] 2025-10-13 05:11:32,510 | INFO     | [job] validate thread has finished
[2025-10-13 01:12:00] 2025-10-13 05:11:32,667 | INFO     | [payload] validate_post thread has finished
[2025-10-13 01:12:00] 2025-10-13 05:11:32,968 | INFO     | [payload] control thread has finished
[2025-10-13 01:12:00] 2025-10-13 05:11:33,358 | INFO     | [data] copytool_out thread has finished
[2025-10-13 01:12:00] 2025-10-13 05:11:35,314 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 01:12:00] 2025-10-13 05:11:40,842 | INFO     | job.realtimelogging is not enabled
[2025-10-13 01:12:00] 2025-10-13 05:11:41,847 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 01:12:00] 2025-10-13 05:11:42,362 | INFO     | [monitor] cgroup control has ended
[2025-10-13 01:12:00] 2025-10-13 05:11:44,457 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140402836784960)>', '<ExcThread(monitor, started 140402405402368)>']
[2025-10-13 01:12:00] 2025-10-13 05:11:49,482 | INFO     | all workflow threads have been joined
[2025-10-13 01:12:00] 2025-10-13 05:11:49,482 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 01:12:00] 2025-10-13 05:11:49,483 | INFO     | traces error code: 0
[2025-10-13 01:12:00] 2025-10-13 05:11:49,483 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 01:12:00] 2025-10-13 05:12:00,579 | INFO     | PID=18062 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 01:12:00] 2025-10-13 05:12:00,580 | INFO     | .. there are 3 such processes running
[2025-10-13 01:12:00] 2025-10-13 05:12:00,580 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 01:12:00] 2025-10-13 05:12:00,580 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 01:12:00] 2025-10-13 05:12:00,580 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 01:12:00] 2025-10-13 05:12:00,580 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 01:12:00] 2025-10-13 05:12:00,580 | INFO     | [monitor] control thread has ended
[2025-10-13 01:12:00] 2025-10-13 05:12:00,697 [wrapper] ==== pilot stdout END ====
[2025-10-13 01:12:00] 2025-10-13 05:12:00,699 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 01:12:00] 2025-10-13 05:12:00,701 [wrapper] pilotpid: 18062
[2025-10-13 01:12:00] 2025-10-13 05:12:00,704 [wrapper] Pilot exit status: 0
[2025-10-13 01:12:00] 2025-10-13 05:12:00,713 [wrapper] pandaids: 6840748852
[2025-10-13 01:12:00] 2025-10-13 05:12:00,753 [wrapper] cleanup supervisor_pilot 16422 18063
[2025-10-13 01:12:00] 2025-10-13 05:12:00,756 [wrapper] Test setup, not cleaning
[2025-10-13 01:12:00] 2025-10-13 05:12:00,758 [wrapper] apfmon messages muted
[2025-10-13 01:12:00] 2025-10-13 05:12:00,760 [wrapper] ==== wrapper stdout END ====
[2025-10-13 01:12:00] 2025-10-13 05:12:00,762 [wrapper] ==== wrapper stderr END ====
[2025-10-13 01:12:00]  *** Error codes and diagnostics ***
[2025-10-13 01:12:00]     "exeErrorCode": 0,
[2025-10-13 01:12:00]     "exeErrorDiag": "",
[2025-10-13 01:12:00]     "pilotErrorCode": 0,
[2025-10-13 01:12:00]     "pilotErrorDiag": "",
[2025-10-13 01:12:00]  *** Listing of results directory ***
[2025-10-13 01:12:00] total 414116
[2025-10-13 01:12:00] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 16:08 pilot3.tar.gz
[2025-10-13 01:12:00] -rwx------ 1 boincer umatlas     36292 Oct 12 16:15 runpilot2-wrapper.sh
[2025-10-13 01:12:00] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 16:15 queuedata.json
[2025-10-13 01:12:00] -rw-r--r-- 1 boincer umatlas       100 Oct 12 22:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 01:12:00] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 22:12 run_atlas
[2025-10-13 01:12:00] -rw-r--r-- 1 boincer umatlas       105 Oct 12 22:12 job.xml
[2025-10-13 01:12:00] -rw-r--r-- 2 boincer umatlas 222253763 Oct 12 22:12 EVNT.46676267._004489.pool.root.1
[2025-10-13 01:12:00] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 22:12 start_atlas.sh
[2025-10-13 01:12:00] drwxrwx--x 2 boincer umatlas      4096 Oct 12 22:12 shared
[2025-10-13 01:12:00] -rw-r--r-- 2 boincer umatlas    569673 Oct 12 22:12 input.tar.gz
[2025-10-13 01:12:00] -rw-r--r-- 1 boincer umatlas         0 Oct 12 22:12 boinc_lockfile
[2025-10-13 01:12:00] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 22:12 pandaJob.out
[2025-10-13 01:12:00] -rw------- 1 boincer umatlas    975595 Oct 12 22:12 agis_schedconf.cvmfs.json
[2025-10-13 01:12:00] -rw------- 1 boincer umatlas   1560580 Oct 12 22:12 agis_ddmendpoints.agis.ALL.json
[2025-10-13 01:12:00] drwx------ 5 boincer umatlas      4096 Oct 12 22:12 pilot3
[2025-10-13 01:12:00] -rw-r--r-- 1 boincer umatlas      5951 Oct 13 01:03 init_data.xml
[2025-10-13 01:12:00] -rw------- 1 boincer umatlas 194057907 Oct 13 01:10 HITS.46676269._088418.pool.root.1
[2025-10-13 01:12:00] -rw------- 1 boincer umatlas        95 Oct 13 01:11 pilot_heartbeat.json
[2025-10-13 01:12:00] -rw-r--r-- 1 boincer umatlas       530 Oct 13 01:11 boinc_task_state.xml
[2025-10-13 01:12:00] -rw------- 1 boincer umatlas      1052 Oct 13 01:11 memory_monitor_summary.json
[2025-10-13 01:12:00] -rw------- 1 boincer umatlas    411199 Oct 13 01:11 log.46676269._088418.job.log.tgz.1
[2025-10-13 01:12:00] -rw------- 1 boincer umatlas      7851 Oct 13 01:11 heartbeat.json
[2025-10-13 01:12:00] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 01:11 boinc_mmap_file
[2025-10-13 01:12:00] -rw-r--r-- 1 boincer umatlas        28 Oct 13 01:11 wrapper_checkpoint.txt
[2025-10-13 01:12:00] -rw------- 1 boincer umatlas       820 Oct 13 01:12 pilotlog.txt
[2025-10-13 01:12:00] -rw------- 1 boincer umatlas   1508878 Oct 13 01:12 log.46676269._088418.job.log.1
[2025-10-13 01:12:00] -rw------- 1 boincer umatlas       357 Oct 13 01:12 output.list
[2025-10-13 01:12:00] -rw-r--r-- 1 boincer umatlas       620 Oct 13 01:12 runtime_log
[2025-10-13 01:12:00] -rw------- 1 boincer umatlas   1935360 Oct 13 01:12 result.tar.gz
[2025-10-13 01:12:00] -rw-r--r-- 1 boincer umatlas      8704 Oct 13 01:12 runtime_log.err
[2025-10-13 01:12:00] -rw------- 1 boincer umatlas       661 Oct 13 01:12 Oa8KDmweHS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmfPlNDmmXEKgm.diag
[2025-10-13 01:12:00] -rw-r--r-- 1 boincer umatlas     21321 Oct 13 01:12 stderr.txt
[2025-10-13 01:12:00] HITS file was successfully produced:
[2025-10-13 01:12:00] -rw------- 1 boincer umatlas 194057907 Oct 13 01:10 shared/HITS.pool.root.1
[2025-10-13 01:12:00]  *** Contents of shared directory: ***
[2025-10-13 01:12:00] total 409036
[2025-10-13 01:12:00] -rw-r--r-- 2 boincer umatlas 222253763 Oct 12 22:12 ATLAS.root_0
[2025-10-13 01:12:00] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 22:12 start_atlas.sh
[2025-10-13 01:12:00] -rw-r--r-- 2 boincer umatlas    569673 Oct 12 22:12 input.tar.gz
[2025-10-13 01:12:00] -rw------- 1 boincer umatlas 194057907 Oct 13 01:10 HITS.pool.root.1
[2025-10-13 01:12:00] -rw------- 1 boincer umatlas   1935360 Oct 13 01:12 result.tar.gz
01:12:02 (14378): run_atlas exited; CPU time 81536.736945
01:12:02 (14378): called boinc_finish(0)

</stderr_txt>
]]>

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