Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:13:31 (941026): wrapper (7.7.26015): starting
23:13:31 (941026): wrapper: running run_atlas (--nthreads 9)
[2025-10-12 23:13:31] Arguments: --nthreads 9
[2025-10-12 23:13:31] Threads: 9
[2025-10-12 23:13:31] Checking for CVMFS
[2025-10-12 23:13:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 23:13:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 23:13:32] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 23:13:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 23:13:34] 2.13.2.0 1094862 130146 839424 151645 2 578 18927304 32935937 54273 16776704 73 406171969 99.730 281263381 19953 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 23:13:34] CVMFS is ok
[2025-10-12 23:13:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 23:13:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 23:13:34] Further information can be found at the LHC@home message board.
[2025-10-12 23:13:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 23:13:34] Checking for apptainer binary...
[2025-10-12 23:13:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 23:13:34] Running /usr/bin/apptainer --version
[2025-10-12 23:13:34] apptainer version 1.4.3-1.el9
[2025-10-12 23:13:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 23:13:35] lc-12-33.aglt2.org
[2025-10-12 23:13:35] apptainer works
[2025-10-12 23:13:35] Set ATHENA_PROC_NUMBER=9
[2025-10-12 23:13:35] Set ATHENA_CORE_NUMBER=9
[2025-10-12 23:13:35] Starting ATLAS job with PandaID=6840849907
[2025-10-12 23:13:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 04:42:23]  *** The last 200 lines of the pilot log: ***
[2025-10-13 04:42:23] 2025-10-13 08:41:17,420 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 04:42:23] 2025-10-13 08:41:17,429 | INFO     | fitting pss+swap vs Time
[2025-10-13 04:42:23] 2025-10-13 08:41:17,437 | INFO     | sum of square deviations: 10066183864.376133
[2025-10-13 04:42:23] 2025-10-13 08:41:17,440 | INFO     | sum of deviations: -80467653997.2727
[2025-10-13 04:42:23] 2025-10-13 08:41:17,440 | INFO     | mean x: 1760335114.3479624
[2025-10-13 04:42:23] 2025-10-13 08:41:17,440 | INFO     | mean y: 2171424.272727273
[2025-10-13 04:42:23] 2025-10-13 08:41:17,445 | INFO     | -- intersect: 14074042036.719591
[2025-10-13 04:42:23] 2025-10-13 08:41:17,445 | INFO     | intersect: 14074042036.719591
[2025-10-13 04:42:23] 2025-10-13 08:41:17,445 | INFO     | chi2: 4.350573265116723
[2025-10-13 04:42:23] 2025-10-13 08:41:17,446 | INFO     | sum of square deviations: 9600244726.662424
[2025-10-13 04:42:23] 2025-10-13 08:41:17,460 | INFO     | sum of deviations: -42375559936.91083
[2025-10-13 04:42:23] 2025-10-13 08:41:17,460 | INFO     | mean x: 1760334961.8471339
[2025-10-13 04:42:23] 2025-10-13 08:41:17,460 | INFO     | mean y: 2183790.2101910827
[2025-10-13 04:42:23] 2025-10-13 08:41:17,461 | INFO     | -- intersect: 7772316928.339709
[2025-10-13 04:42:23] 2025-10-13 08:41:17,461 | INFO     | intersect: 7772316928.339709
[2025-10-13 04:42:23] 2025-10-13 08:41:17,461 | INFO     | chi2: 3.039706833639979
[2025-10-13 04:42:23] 2025-10-13 08:41:17,461 | INFO     | current chi2=3.039706833639979 (change=30.130889691880046 %)
[2025-10-13 04:42:23] 2025-10-13 08:41:17,462 | INFO     | sum of square deviations: 9148872203.320335
[2025-10-13 04:42:23] 2025-10-13 08:41:17,470 | INFO     | sum of deviations: -40439604286.99027
[2025-10-13 04:42:23] 2025-10-13 08:41:17,470 | INFO     | mean x: 1760334809.3398058
[2025-10-13 04:42:23] 2025-10-13 08:41:17,470 | INFO     | mean y: 2184442.8284789645
[2025-10-13 04:42:23] 2025-10-13 08:41:17,470 | INFO     | -- intersect: 7783170068.191213
[2025-10-13 04:42:23] 2025-10-13 08:41:17,471 | INFO     | intersect: 7783170068.191213
[2025-10-13 04:42:23] 2025-10-13 08:41:17,471 | INFO     | chi2: 3.039224750964889
[2025-10-13 04:42:23] 2025-10-13 08:41:17,471 | INFO     | current chi2=3.039224750964889 (change=0.015859512165945222 %)
[2025-10-13 04:42:23] 2025-10-13 08:41:17,471 | INFO     | right removable region: 308
[2025-10-13 04:42:23] 2025-10-13 08:41:17,472 | INFO     | sum of square deviations: 9600215691.261196
[2025-10-13 04:42:23] 2025-10-13 08:41:17,483 | INFO     | sum of deviations: -138622688671.20377
[2025-10-13 04:42:23] 2025-10-13 08:41:17,483 | INFO     | mean x: 1760335266.8535032
[2025-10-13 04:42:23] 2025-10-13 08:41:17,484 | INFO     | mean y: 2190383.821656051
[2025-10-13 04:42:23] 2025-10-13 08:41:17,484 | INFO     | -- intersect: 25420620083.90644
[2025-10-13 04:42:23] 2025-10-13 08:41:17,484 | INFO     | intersect: 25420620083.90644
[2025-10-13 04:42:23] 2025-10-13 08:41:17,492 | INFO     | chi2: 2.351026154282096
[2025-10-13 04:42:23] 2025-10-13 08:41:17,493 | INFO     | current chi2=2.351026154282096 (change=45.96054333499382 %)
[2025-10-13 04:42:23] 2025-10-13 08:41:17,497 | INFO     | sum of square deviations: 9148852443.126251
[2025-10-13 04:42:23] 2025-10-13 08:41:17,501 | INFO     | sum of deviations: -152059185367.7575
[2025-10-13 04:42:23] 2025-10-13 08:41:17,501 | INFO     | mean x: 1760335419.3592234
[2025-10-13 04:42:23] 2025-10-13 08:41:17,501 | INFO     | mean y: 2194898.1779935276
[2025-10-13 04:42:23] 2025-10-13 08:41:17,501 | INFO     | -- intersect: 29259981216.81995
[2025-10-13 04:42:23] 2025-10-13 08:41:17,501 | INFO     | intersect: 29259981216.81995
[2025-10-13 04:42:23] 2025-10-13 08:41:17,510 | INFO     | chi2: 2.1600111938426094
[2025-10-13 04:42:23] 2025-10-13 08:41:17,511 | INFO     | current chi2=2.1600111938426094 (change=8.124748424919778 %)
[2025-10-13 04:42:23] 2025-10-13 08:41:17,511 | INFO     | left removable region: 20
[2025-10-13 04:42:23] 2025-10-13 08:41:17,511 | INFO     | sum of square deviations: 7407404611.163154
[2025-10-13 04:42:23] 2025-10-13 08:41:17,522 | INFO     | sum of deviations: -81871552029.89935
[2025-10-13 04:42:23] 2025-10-13 08:41:17,522 | INFO     | mean x: 1760335388.8576388
[2025-10-13 04:42:23] 2025-10-13 08:41:17,522 | INFO     | mean y: 2198485.295138889
[2025-10-13 04:42:23] 2025-10-13 08:41:17,522 | INFO     | -- intersect: 19458593531.1033
[2025-10-13 04:42:23] 2025-10-13 08:41:17,523 | INFO     | intersect: 19458593531.1033
[2025-10-13 04:42:23] 2025-10-13 08:41:17,523 | INFO     | chi2: 0.7243249408210586
[2025-10-13 04:42:23] 2025-10-13 08:41:17,523 | INFO     | -- intersect: 19458593531.1033
[2025-10-13 04:42:23] 2025-10-13 08:41:17,523 | INFO     | current memory leak: -11.05 B/s (using 288 data points, chi2=0.72)
[2025-10-13 04:42:23] 2025-10-13 08:41:17,524 | INFO     | could have reported an average CPU frequency of 2709 MHz (14 samples)
[2025-10-13 04:42:23] 2025-10-13 08:41:17,524 | INFO     | ..............................
[2025-10-13 04:42:23] 2025-10-13 08:41:17,525 | INFO     | . Timing measurements:
[2025-10-13 04:42:23] 2025-10-13 08:41:17,525 | INFO     | . get job = 0 s
[2025-10-13 04:42:23] 2025-10-13 08:41:17,525 | INFO     | . initial setup = 6 s
[2025-10-13 04:42:23] 2025-10-13 08:41:17,525 | INFO     | . payload setup = 41 s
[2025-10-13 04:42:23] 2025-10-13 08:41:17,525 | INFO     | . stage-in = 0 s
[2025-10-13 04:42:23] 2025-10-13 08:41:17,525 | INFO     | . payload execution = 19442 s
[2025-10-13 04:42:23] 2025-10-13 08:41:17,525 | INFO     | . stage-out = 5 s
[2025-10-13 04:42:23] 2025-10-13 08:41:17,525 | INFO     | . log creation = 0 s
[2025-10-13 04:42:23] 2025-10-13 08:41:17,525 | INFO     | ..............................
[2025-10-13 04:42:23] 2025-10-13 08:41:17,990 | INFO     | 
[2025-10-13 04:42:23] 2025-10-13 08:41:17,991 | INFO     | job summary report
[2025-10-13 04:42:23] 2025-10-13 08:41:17,991 | INFO     | --------------------------------------------------
[2025-10-13 04:42:23] 2025-10-13 08:41:17,991 | INFO     | PanDA job id: 6840849907
[2025-10-13 04:42:23] 2025-10-13 08:41:17,991 | INFO     | task id: 46676269
[2025-10-13 04:42:23] 2025-10-13 08:41:17,991 | INFO     | errors: (none)
[2025-10-13 04:42:23] 2025-10-13 08:41:17,991 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 04:42:23] 2025-10-13 08:41:17,991 | INFO     | pilot state: finished 
[2025-10-13 04:42:23] 2025-10-13 08:41:17,991 | INFO     | transexitcode: 0
[2025-10-13 04:42:23] 2025-10-13 08:41:17,991 | INFO     | exeerrorcode: 0
[2025-10-13 04:42:23] 2025-10-13 08:41:17,991 | INFO     | exeerrordiag: 
[2025-10-13 04:42:23] 2025-10-13 08:41:17,991 | INFO     | exitcode: 0
[2025-10-13 04:42:23] 2025-10-13 08:41:17,991 | INFO     | exitmsg: OK
[2025-10-13 04:42:23] 2025-10-13 08:41:17,992 | INFO     | cpuconsumptiontime: 44072 s
[2025-10-13 04:42:23] 2025-10-13 08:41:17,992 | INFO     | nevents: 400
[2025-10-13 04:42:23] 2025-10-13 08:41:17,992 | INFO     | neventsw: 0
[2025-10-13 04:42:23] 2025-10-13 08:41:17,992 | INFO     | pid: 956062
[2025-10-13 04:42:23] 2025-10-13 08:41:17,992 | INFO     | pgrp: 956062
[2025-10-13 04:42:23] 2025-10-13 08:41:17,992 | INFO     | corecount: 9
[2025-10-13 04:42:23] 2025-10-13 08:41:17,992 | INFO     | event service: False
[2025-10-13 04:42:23] 2025-10-13 08:41:17,992 | INFO     | sizes: {0: 2348029, 1: 2348714, 2: 2348913, 3: 2348941, 14: 2348941, 24: 2348969, 33: 2349387, 35: 2349443, 19487: 2381963, 19488: 2381962, 19495: 2391016, 19496: 
[2025-10-13 04:42:23] 2025-10-13 08:41:17,992 | INFO     | --------------------------------------------------
[2025-10-13 04:42:23] 2025-10-13 08:41:17,992 | INFO     | 
[2025-10-13 04:42:23] 2025-10-13 08:41:17,992 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-13 04:42:23] 2025-10-13 08:41:18,231 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 04:42:23] 2025-10-13 08:41:18,236 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 04:42:23] 2025-10-13 08:41:18,236 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 04:42:23] 2025-10-13 08:41:18,236 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 04:42:23] 2025-10-13 08:41:18,236 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 04:42:23] 2025-10-13 08:41:18,236 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 04:42:23] 2025-10-13 08:41:18,236 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 04:42:23] 2025-10-13 08:41:18,236 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 04:42:23] 2025-10-13 08:41:18,236 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 04:42:23] 2025-10-13 08:41:18,236 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 04:42:23] 2025-10-13 08:41:18,237 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 04:42:23] 2025-10-13 08:41:18,237 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 04:42:23] 2025-10-13 08:41:18,237 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 04:42:23] 2025-10-13 08:41:18,237 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 04:42:23] 2025-10-13 08:41:18,237 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 04:42:23] 2025-10-13 08:41:18,237 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 04:42:23] 2025-10-13 08:41:18,237 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 04:42:23] 2025-10-13 08:41:18,237 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 04:42:23] 2025-10-13 08:41:18,237 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 04:42:23] 2025-10-13 08:41:18,237 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 04:42:23] 2025-10-13 08:41:18,237 | INFO     | job 6840849907 has completed (purged errors)
[2025-10-13 04:42:23] 2025-10-13 08:41:18,238 | INFO     | overall cleanup function is called
[2025-10-13 04:42:23] 2025-10-13 08:41:19,286 | INFO     | --- collectZombieJob: --- 10, [956062]
[2025-10-13 04:42:23] 2025-10-13 08:41:19,286 | INFO     | zombie collector waiting for pid 956062
[2025-10-13 04:42:23] 2025-10-13 08:41:19,286 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 04:42:23] 2025-10-13 08:41:19,286 | INFO     | collected zombie processes
[2025-10-13 04:42:23] 2025-10-13 08:41:19,286 | INFO     | will attempt to kill all subprocesses of pid=956062
[2025-10-13 04:42:23] 2025-10-13 08:41:21,415 | INFO     | PID=945736 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 04:42:23] 2025-10-13 08:41:21,415 | INFO     | .. there are 63 such processes running
[2025-10-13 04:42:23] 2025-10-13 08:41:21,773 | INFO     | process IDs to be killed: [956062] (in reverse order)
[2025-10-13 04:42:23] 2025-10-13 08:41:24,226 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 04:42:23] 2025-10-13 08:41:24,226 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 04:42:23] 2025-10-13 08:41:24,680 | INFO     | did not find any defunct processes belonging to 956062
[2025-10-13 04:42:23] 2025-10-13 08:41:24,835 | INFO     | did not find any defunct processes belonging to 956062
[2025-10-13 04:42:23] 2025-10-13 08:41:24,835 | INFO     | ready for new job
[2025-10-13 04:42:23] 2025-10-13 08:41:24,835 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 04:42:23] 2025-10-13 08:41:24,847 | INFO     | ***************************************
[2025-10-13 04:42:23] 2025-10-13 08:41:24,847 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 04:42:23] 2025-10-13 08:41:24,848 | INFO     | ***************************************
[2025-10-13 04:42:23] 2025-10-13 08:41:24,848 | INFO     | 
[2025-10-13 04:42:23] 2025-10-13 08:41:24,873 | INFO     | architecture information:
[2025-10-13 04:42:23] 2025-10-13 08:41:24,882 | INFO     | executing command: cat /etc/os-release
[2025-10-13 04:42:23] 2025-10-13 08:41:24,950 | INFO     | cat /etc/os-release:
[2025-10-13 04:42:23] NAME="CentOS Linux"
[2025-10-13 04:42:23] VERSION="7 (Core)"
[2025-10-13 04:42:23] ID="centos"
[2025-10-13 04:42:23] ID_LIKE="rhel fedora"
[2025-10-13 04:42:23] VERSION_ID="7"
[2025-10-13 04:42:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 04:42:23] ANSI_COLOR="0;31"
[2025-10-13 04:42:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 04:42:23] HOME_URL="https://www.centos.org/"
[2025-10-13 04:42:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 04:42:23] 
[2025-10-13 04:42:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 04:42:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 04:42:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 04:42:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 04:42:23] 
[2025-10-13 04:42:23] 2025-10-13 08:41:24,950 | INFO     | ***************************************
[2025-10-13 04:42:23] 2025-10-13 08:41:25,456 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-13 04:42:23] 2025-10-13 08:41:25,591 | INFO     | sufficient remaining disk space (72727134208 B)
[2025-10-13 04:42:23] 2025-10-13 08:41:25,591 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 04:42:23] 2025-10-13 08:41:25,591 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 04:42:23] 2025-10-13 08:41:25,592 | INFO     | update_server=False
[2025-10-13 04:42:23] 2025-10-13 08:41:25,592 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 04:42:23] 2025-10-13 08:41:25,604 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 04:42:23] 2025-10-13 08:41:25,881 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 04:42:23] 2025-10-13 08:41:25,882 | INFO     | aborting loop
[2025-10-13 04:42:23] 2025-10-13 08:41:26,097 | INFO     | all job control threads have been joined
[2025-10-13 04:42:23] 2025-10-13 08:41:26,517 | INFO     | all data control threads have been joined
[2025-10-13 04:42:23] 2025-10-13 08:41:26,611 | INFO     | [job] retrieve thread has finished
[2025-10-13 04:42:23] 2025-10-13 08:41:26,735 | INFO     | all payload control threads have been joined
[2025-10-13 04:42:23] 2025-10-13 08:41:26,864 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 04:42:23] 2025-10-13 08:41:26,889 | INFO     | [job] job monitor thread has finished
[2025-10-13 04:42:23] 2025-10-13 08:41:27,112 | INFO     | [job] control thread has finished
[2025-10-13 04:42:23] 2025-10-13 08:41:27,144 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 04:42:23] 2025-10-13 08:41:27,412 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 04:42:23] 2025-10-13 08:41:27,455 | INFO     | [job] validate thread has finished
[2025-10-13 04:42:23] 2025-10-13 08:41:27,458 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 04:42:23] 2025-10-13 08:41:27,458 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 04:42:23] 2025-10-13 08:41:27,459 | INFO     | [data] copytool_in thread has finished
[2025-10-13 04:42:23] 2025-10-13 08:41:27,524 | INFO     | [data] control thread has finished
[2025-10-13 04:42:23] 2025-10-13 08:41:27,620 | INFO     | [data] copytool_out thread has finished
[2025-10-13 04:42:23] 2025-10-13 08:41:27,742 | INFO     | [payload] control thread has finished
[2025-10-13 04:42:23] 2025-10-13 08:41:27,888 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 04:42:23] 2025-10-13 08:41:28,026 | INFO     | [payload] validate_post thread has finished
[2025-10-13 04:42:23] 2025-10-13 08:41:28,029 | INFO     | [payload] failed_post thread has finished
[2025-10-13 04:42:23] 2025-10-13 08:41:28,167 | INFO     | [job] queue monitor thread has finished
[2025-10-13 04:42:23] 2025-10-13 08:41:31,433 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 04:42:23] 2025-10-13 08:41:55,636 | INFO     | PID=945736 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 04:42:23] 2025-10-13 08:41:55,671 | INFO     | .. there are 63 such processes running
[2025-10-13 04:42:23] 2025-10-13 08:41:55,672 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 04:42:23] 2025-10-13 08:41:55,672 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 04:42:23] 2025-10-13 08:41:55,672 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 04:42:23] 2025-10-13 08:42:15,893 | INFO     | [monitor] cgroup control has ended
[2025-10-13 04:42:23] 2025-10-13 08:42:15,946 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140572722833216)>', '<ExcThread(monitor, started 140571838498560)>']
[2025-10-13 04:42:23] 2025-10-13 08:42:16,841 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 04:42:23] 2025-10-13 08:42:16,842 | INFO     | [monitor] control thread has ended
[2025-10-13 04:42:23] 2025-10-13 08:42:20,971 | INFO     | all workflow threads have been joined
[2025-10-13 04:42:23] 2025-10-13 08:42:20,978 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 04:42:23] 2025-10-13 08:42:20,979 | INFO     | traces error code: 0
[2025-10-13 04:42:23] 2025-10-13 08:42:20,979 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 04:42:23] 2025-10-13 08:42:21,720 [wrapper] ==== pilot stdout END ====
[2025-10-13 04:42:23] 2025-10-13 08:42:21,737 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 04:42:23] 2025-10-13 08:42:21,758 [wrapper] pilotpid: 945736
[2025-10-13 04:42:23] 2025-10-13 08:42:21,765 [wrapper] Pilot exit status: 0
[2025-10-13 04:42:23] 2025-10-13 08:42:21,886 [wrapper] pandaids: 6840849907
[2025-10-13 04:42:23] 2025-10-13 08:42:22,258 [wrapper] cleanup supervisor_pilot 2212667 945737
[2025-10-13 04:42:23] 2025-10-13 08:42:22,271 [wrapper] Test setup, not cleaning
[2025-10-13 04:42:23] 2025-10-13 08:42:22,313 [wrapper] apfmon messages muted
[2025-10-13 04:42:23] 2025-10-13 08:42:22,323 [wrapper] ==== wrapper stdout END ====
[2025-10-13 04:42:23] 2025-10-13 08:42:22,366 [wrapper] ==== wrapper stderr END ====
[2025-10-13 04:42:23]  *** Error codes and diagnostics ***
[2025-10-13 04:42:23]     "exeErrorCode": 0,
[2025-10-13 04:42:23]     "exeErrorDiag": "",
[2025-10-13 04:42:23]     "pilotErrorCode": 0,
[2025-10-13 04:42:23]     "pilotErrorDiag": "",
[2025-10-13 04:42:23]  *** Listing of results directory ***
[2025-10-13 04:42:23] total 415984
[2025-10-13 04:42:23] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 17:56 queuedata.json
[2025-10-13 04:42:23] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 17:57 pilot3.tar.gz
[2025-10-13 04:42:23] -rwx------. 1 boincer umatlas     36292 Oct 12 17:58 runpilot2-wrapper.sh
[2025-10-13 04:42:23] -rw-r--r--. 1 boincer umatlas       100 Oct 12 23:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 04:42:23] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 23:13 run_atlas
[2025-10-13 04:42:23] -rw-r--r--. 1 boincer umatlas       105 Oct 12 23:13 job.xml
[2025-10-13 04:42:23] -rw-r--r--. 2 boincer umatlas 223581089 Oct 12 23:13 EVNT.46676267._004847.pool.root.1
[2025-10-13 04:42:23] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 23:13 start_atlas.sh
[2025-10-13 04:42:23] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 23:13 shared
[2025-10-13 04:42:23] -rw-r--r--. 2 boincer umatlas    569679 Oct 12 23:13 input.tar.gz
[2025-10-13 04:42:23] -rw-r--r--. 1 boincer umatlas         0 Oct 12 23:13 boinc_lockfile
[2025-10-13 04:42:23] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 23:13 pandaJob.out
[2025-10-13 04:42:23] -rw-------. 1 boincer umatlas    974373 Oct 12 23:14 agis_schedconf.cvmfs.json
[2025-10-13 04:42:23] drwx------. 5 boincer umatlas      4096 Oct 12 23:14 pilot3
[2025-10-13 04:42:23] -rw-------. 1 boincer umatlas 193054412 Oct 13 04:38 HITS.46676269._090499.pool.root.1
[2025-10-13 04:42:23] -rw-r--r--. 1 boincer umatlas       530 Oct 13 04:38 boinc_task_state.xml
[2025-10-13 04:42:23] -rw-------. 1 boincer umatlas      1046 Oct 13 04:40 memory_monitor_summary.json
[2025-10-13 04:42:23] -rw-------. 1 boincer umatlas   1560580 Oct 13 04:40 agis_ddmendpoints.agis.ALL.json
[2025-10-13 04:42:23] -rw-------. 1 boincer umatlas    532133 Oct 13 04:40 log.46676269._090499.job.log.tgz.1
[2025-10-13 04:42:23] -rw-r--r--. 1 boincer umatlas      6877 Oct 13 04:40 init_data.xml
[2025-10-13 04:42:23] -rw-------. 1 boincer umatlas      7834 Oct 13 04:41 heartbeat.json
[2025-10-13 04:42:23] -rw-------. 1 boincer umatlas        95 Oct 13 04:41 pilot_heartbeat.json
[2025-10-13 04:42:23] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 04:42 boinc_mmap_file
[2025-10-13 04:42:23] -rw-r--r--. 1 boincer umatlas        27 Oct 13 04:42 wrapper_checkpoint.txt
[2025-10-13 04:42:23] -rw-------. 1 boincer umatlas      4823 Oct 13 04:42 pilotlog.txt
[2025-10-13 04:42:23] -rw-------. 1 boincer umatlas   2180323 Oct 13 04:42 log.46676269._090499.job.log.1
[2025-10-13 04:42:23] -rw-------. 1 boincer umatlas       357 Oct 13 04:42 output.list
[2025-10-13 04:42:23] -rw-r--r--. 1 boincer umatlas       620 Oct 13 04:42 runtime_log
[2025-10-13 04:42:23] -rw-------. 1 boincer umatlas   2734080 Oct 13 04:42 result.tar.gz
[2025-10-13 04:42:23] -rw-r--r--. 1 boincer umatlas      8704 Oct 13 04:42 runtime_log.err
[2025-10-13 04:42:23] -rw-------. 1 boincer umatlas       656 Oct 13 04:42 8C0MDmeGJS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmellNDmpgAsSo.diag
[2025-10-13 04:42:23] -rw-r--r--. 1 boincer umatlas     21128 Oct 13 04:42 stderr.txt
[2025-10-13 04:42:23] HITS file was successfully produced:
[2025-10-13 04:42:23] -rw-------. 1 boincer umatlas 193054412 Oct 13 04:38 shared/HITS.pool.root.1
[2025-10-13 04:42:23]  *** Contents of shared directory: ***
[2025-10-13 04:42:23] total 410132
[2025-10-13 04:42:23] -rw-r--r--. 2 boincer umatlas 223581089 Oct 12 23:13 ATLAS.root_0
[2025-10-13 04:42:23] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 23:13 start_atlas.sh
[2025-10-13 04:42:23] -rw-r--r--. 2 boincer umatlas    569679 Oct 12 23:13 input.tar.gz
[2025-10-13 04:42:23] -rw-------. 1 boincer umatlas 193054412 Oct 13 04:38 HITS.pool.root.1
[2025-10-13 04:42:23] -rw-------. 1 boincer umatlas   2734080 Oct 13 04:42 result.tar.gz
04:42:24 (941026): run_atlas exited; CPU time 45190.333487
04:42:24 (941026): called boinc_finish(0)

</stderr_txt>
]]>

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