Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:33:08 (2568602): wrapper (7.7.26015): starting
11:33:08 (2568602): wrapper: running run_atlas (--nthreads 2)
[2025-10-13 11:33:08] Arguments: --nthreads 2
[2025-10-13 11:33:08] Threads: 2
[2025-10-13 11:33:08] Checking for CVMFS
[2025-10-13 11:33:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 11:33:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 11:33:08] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 11:33:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 11:33:08] 2.9.2.0 1554424 4185 59300 151656 3 56 30116700 36864001 0 130560 0 2509913 99.989 143666 781 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 11:33:08] CVMFS is ok
[2025-10-13 11:33:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 11:33:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 11:33:08] Further information can be found at the LHC@home message board.
[2025-10-13 11:33:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 11:33:08] Checking for apptainer binary...
[2025-10-13 11:33:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 11:33:08] Running /usr/bin/apptainer --version
[2025-10-13 11:33:08] apptainer version 1.4.1-1.1
[2025-10-13 11:33:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 11:33:08] thA310
[2025-10-13 11:33:08] apptainer works
[2025-10-13 11:33:08] Set ATHENA_PROC_NUMBER=2
[2025-10-13 11:33:08] Set ATHENA_CORE_NUMBER=2
[2025-10-13 11:33:08] Starting ATLAS job with PandaID=6840834619
[2025-10-13 11:33:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 13:45:39]  *** The last 200 lines of the pilot log: ***
[2025-10-13 13:45:39] 2025-10-13 11:44:35,508 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 13:45:39] 2025-10-13 11:44:35,508 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 13:45:39] 2025-10-13 11:44:35,508 | INFO     | job 6840834619 has completed (purged errors)
[2025-10-13 13:45:39] 2025-10-13 11:44:35,508 | INFO     | overall cleanup function is called
[2025-10-13 13:45:39] 2025-10-13 11:44:36,515 | INFO     | --- collectZombieJob: --- 10, [2578722]
[2025-10-13 13:45:39] 2025-10-13 11:44:36,515 | INFO     | zombie collector waiting for pid 2578722
[2025-10-13 13:45:39] 2025-10-13 11:44:36,515 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 13:45:39] 2025-10-13 11:44:36,515 | INFO     | collected zombie processes
[2025-10-13 13:45:39] 2025-10-13 11:44:36,516 | INFO     | will attempt to kill all subprocesses of pid=2578722
[2025-10-13 13:45:39] 2025-10-13 11:44:36,554 | INFO     | process IDs to be killed: [2578722] (in reverse order)
[2025-10-13 13:45:39] 2025-10-13 11:44:36,576 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 13:45:39] 2025-10-13 11:44:36,576 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 13:45:39] 2025-10-13 11:44:36,577 | INFO     | did not find any defunct processes belonging to 2578722
[2025-10-13 13:45:39] 2025-10-13 11:44:36,578 | INFO     | did not find any defunct processes belonging to 2578722
[2025-10-13 13:45:39] 2025-10-13 11:44:36,578 | INFO     | ready for new job
[2025-10-13 13:45:39] 2025-10-13 11:44:36,578 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 13:45:39] 2025-10-13 11:44:36,579 | INFO     | ***************************************
[2025-10-13 13:45:39] 2025-10-13 11:44:36,579 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 13:45:39] 2025-10-13 11:44:36,579 | INFO     | ***************************************
[2025-10-13 13:45:39] 2025-10-13 11:44:36,579 | INFO     | 
[2025-10-13 13:45:39] 2025-10-13 11:44:36,579 | INFO     | architecture information:
[2025-10-13 13:45:39] 2025-10-13 11:44:36,579 | INFO     | executing command: cat /etc/os-release
[2025-10-13 13:45:39] 2025-10-13 11:44:36,587 | INFO     | cat /etc/os-release:
[2025-10-13 13:45:39] NAME="CentOS Linux"
[2025-10-13 13:45:39] VERSION="7 (Core)"
[2025-10-13 13:45:39] ID="centos"
[2025-10-13 13:45:39] ID_LIKE="rhel fedora"
[2025-10-13 13:45:39] VERSION_ID="7"
[2025-10-13 13:45:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 13:45:39] ANSI_COLOR="0;31"
[2025-10-13 13:45:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 13:45:39] HOME_URL="https://www.centos.org/"
[2025-10-13 13:45:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 13:45:39] 
[2025-10-13 13:45:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 13:45:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 13:45:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 13:45:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 13:45:39] 
[2025-10-13 13:45:39] 2025-10-13 11:44:36,587 | INFO     | ***************************************
[2025-10-13 13:45:39] 2025-10-13 11:44:37,089 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 13:45:39] 2025-10-13 11:44:37,102 | INFO     | sufficient remaining disk space (494073282560 B)
[2025-10-13 13:45:39] 2025-10-13 11:44:37,102 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 13:45:39] 2025-10-13 11:44:37,102 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 13:45:39] 2025-10-13 11:44:37,102 | INFO     | update_server=False
[2025-10-13 13:45:39] 2025-10-13 11:44:37,102 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 13:45:39] 2025-10-13 11:44:37,102 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 13:45:39] 2025-10-13 11:44:37,102 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 13:45:39] 2025-10-13 11:44:37,102 | INFO     | aborting loop
[2025-10-13 13:45:39] 2025-10-13 11:44:37,102 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 13:45:39] 2025-10-13 11:44:37,314 | INFO     | all payload control threads have been joined
[2025-10-13 13:45:39] 2025-10-13 11:44:37,564 | INFO     | all job control threads have been joined
[2025-10-13 13:45:39] 2025-10-13 11:44:37,938 | INFO     | all data control threads have been joined
[2025-10-13 13:45:39] 2025-10-13 11:44:38,108 | INFO     | [job] queue monitor thread has finished
[2025-10-13 13:45:39] 2025-10-13 11:44:38,109 | INFO     | [job] retrieve thread has finished
[2025-10-13 13:45:39] 2025-10-13 11:44:38,109 | INFO     | [job] job monitor thread has finished
[2025-10-13 13:45:39] 2025-10-13 11:44:38,320 | INFO     | [payload] control thread has finished
[2025-10-13 13:45:39] 2025-10-13 11:44:38,570 | INFO     | [job] control thread has finished
[2025-10-13 13:45:39] 2025-10-13 11:44:38,629 | INFO     | [payload] failed_post thread has finished
[2025-10-13 13:45:39] 2025-10-13 11:44:38,713 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 13:45:39] 2025-10-13 11:44:38,845 | INFO     | [data] copytool_in thread has finished
[2025-10-13 13:45:39] 2025-10-13 11:44:38,944 | INFO     | [data] control thread has finished
[2025-10-13 13:45:39] 2025-10-13 11:44:39,108 | INFO     | [data] copytool_out thread has finished
[2025-10-13 13:45:39] 2025-10-13 11:44:39,181 | INFO     | [payload] validate_post thread has finished
[2025-10-13 13:45:39] 2025-10-13 11:44:39,393 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 13:45:39] 2025-10-13 11:44:39,407 | INFO     | [job] validate thread has finished
[2025-10-13 13:45:39] 2025-10-13 11:44:39,453 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 13:45:39] 2025-10-13 11:44:39,462 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 13:45:39] 2025-10-13 11:44:42,721 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 13:45:39] 2025-10-13 11:44:47,237 | INFO     | job.realtimelogging is not enabled
[2025-10-13 13:45:39] 2025-10-13 11:44:48,243 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 13:45:39] 2025-10-13 11:45:07,807 | INFO     | PID=2572308 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 13:45:39] 2025-10-13 11:45:07,808 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 13:45:39] 2025-10-13 11:45:07,808 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 13:45:39] 2025-10-13 11:45:07,808 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 13:45:39] 2025-10-13 11:45:34,416 | INFO     | [monitor] cgroup control has ended
[2025-10-13 13:45:39] 2025-10-13 11:45:34,672 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139859690555200)>', '<ExcThread(monitor, started 139858815211264)>']
[2025-10-13 13:45:39] 2025-10-13 11:45:34,940 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 13:45:39] 2025-10-13 11:45:34,940 | INFO     | [monitor] control thread has ended
[2025-10-13 13:45:39] 2025-10-13 11:45:39,693 | INFO     | all workflow threads have been joined
[2025-10-13 13:45:39] 2025-10-13 11:45:39,694 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 13:45:39] 2025-10-13 11:45:39,694 | INFO     | traces error code: 0
[2025-10-13 13:45:39] 2025-10-13 11:45:39,695 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 13:45:39] 2025-10-13 11:45:39,773 [wrapper] ==== pilot stdout END ====
[2025-10-13 13:45:39] 2025-10-13 11:45:39,776 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 13:45:39] 2025-10-13 11:45:39,778 [wrapper] pilotpid: 2572308
[2025-10-13 13:45:39] 2025-10-13 11:45:39,781 [wrapper] Pilot exit status: 0
[2025-10-13 13:45:39] 2025-10-13 11:45:39,786 [wrapper] pandaids: 6840834619
[2025-10-13 13:45:39] 2025-10-13 11:45:39,799 [wrapper] cleanup supervisor_pilot 2593538 2572309
[2025-10-13 13:45:39] 2025-10-13 11:45:39,802 [wrapper] Test setup, not cleaning
[2025-10-13 13:45:39] 2025-10-13 11:45:39,804 [wrapper] apfmon messages muted
[2025-10-13 13:45:39] 2025-10-13 11:45:39,806 [wrapper] ==== wrapper stdout END ====
[2025-10-13 13:45:39] 2025-10-13 11:45:39,808 [wrapper] ==== wrapper stderr END ====
[2025-10-13 13:45:39]  *** Error codes and diagnostics ***
[2025-10-13 13:45:39]     "exeErrorCode": 0,
[2025-10-13 13:45:39]     "exeErrorDiag": "",
[2025-10-13 13:45:39]     "pilotErrorCode": 0,
[2025-10-13 13:45:39]     "pilotErrorDiag": "",
[2025-10-13 13:45:39]  *** Listing of results directory ***
[2025-10-13 13:45:39] total 413984
[2025-10-13 13:45:39] -rw-r--r-- 1 boinc boinc    557409 Oct 12 23:31 pilot3.tar.gz
[2025-10-13 13:45:39] -rwx------ 1 boinc boinc     36292 Oct 12 23:39 runpilot2-wrapper.sh
[2025-10-13 13:45:39] -rw-r--r-- 1 boinc boinc      5112 Oct 12 23:39 queuedata.json
[2025-10-13 13:45:39] -rw-r--r-- 1 boinc boinc       100 Oct 13 11:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 13:45:39] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 11:33 run_atlas
[2025-10-13 13:45:39] -rw-r--r-- 1 boinc boinc       105 Oct 13 11:33 job.xml
[2025-10-13 13:45:39] -rw-r--r-- 2 boinc boinc 221037054 Oct 13 11:33 EVNT.46676267._001928.pool.root.1
[2025-10-13 13:45:39] drwxrwx--x 2 boinc boinc      4096 Oct 13 11:33 shared
[2025-10-13 13:45:39] -rw-r--r-- 2 boinc boinc    569684 Oct 13 11:33 input.tar.gz
[2025-10-13 13:45:39] -rw-r--r-- 2 boinc boinc     15120 Oct 13 11:33 start_atlas.sh
[2025-10-13 13:45:39] -rw-r--r-- 1 boinc boinc         0 Oct 13 11:33 boinc_setup_complete
[2025-10-13 13:45:39] -rw-r--r-- 1 boinc boinc      6205 Oct 13 11:33 init_data.xml
[2025-10-13 13:45:39] -rw-r--r-- 1 boinc boinc         0 Oct 13 11:33 boinc_lockfile
[2025-10-13 13:45:39] -rw-r--r-- 1 boinc boinc      2549 Oct 13 11:33 pandaJob.out
[2025-10-13 13:45:39] -rw------- 1 boinc boinc    972849 Oct 13 11:33 agis_schedconf.cvmfs.json
[2025-10-13 13:45:39] -rw------- 1 boinc boinc   1560580 Oct 13 11:33 agis_ddmendpoints.agis.ALL.json
[2025-10-13 13:45:39] drwx------ 5 boinc boinc      4096 Oct 13 11:33 pilot3
[2025-10-13 13:45:39] -rw------- 1 boinc boinc 196183860 Oct 13 13:44 HITS.46676269._090212.pool.root.1
[2025-10-13 13:45:39] -rw-r--r-- 1 boinc boinc       529 Oct 13 13:44 boinc_task_state.xml
[2025-10-13 13:45:39] -rw------- 1 boinc boinc      1013 Oct 13 13:44 memory_monitor_summary.json
[2025-10-13 13:45:39] -rw------- 1 boinc boinc    271809 Oct 13 13:44 log.46676269._090212.job.log.tgz.1
[2025-10-13 13:45:39] -rw------- 1 boinc boinc      7754 Oct 13 13:44 heartbeat.json
[2025-10-13 13:45:39] -rw------- 1 boinc boinc        95 Oct 13 13:45 pilot_heartbeat.json
[2025-10-13 13:45:39] -rw-r--r-- 1 boinc boinc        27 Oct 13 13:45 wrapper_checkpoint.txt
[2025-10-13 13:45:39] -rw-r--r-- 1 boinc boinc      8192 Oct 13 13:45 boinc_mmap_file
[2025-10-13 13:45:39] -rw------- 1 boinc boinc      4824 Oct 13 13:45 pilotlog.txt
[2025-10-13 13:45:39] -rw------- 1 boinc boinc   1130125 Oct 13 13:45 log.46676269._090212.job.log.1
[2025-10-13 13:45:39] -rw------- 1 boinc boinc       357 Oct 13 13:45 output.list
[2025-10-13 13:45:39] -rw-r--r-- 1 boinc boinc       620 Oct 13 13:45 runtime_log
[2025-10-13 13:45:39] -rw------- 1 boinc boinc   1423360 Oct 13 13:45 result.tar.gz
[2025-10-13 13:45:39] -rw-r--r-- 1 boinc boinc      8777 Oct 13 13:45 runtime_log.err
[2025-10-13 13:45:39] -rw------- 1 boinc boinc       659 Oct 13 13:45 RwAMDmYxIS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm5ilNDmBxRSHm.diag
[2025-10-13 13:45:39] -rw-r--r-- 1 boinc boinc     11109 Oct 13 13:45 stderr.txt
[2025-10-13 13:45:39] HITS file was successfully produced:
[2025-10-13 13:45:39] -rw------- 1 boinc boinc 196183860 Oct 13 13:44 shared/HITS.pool.root.1
[2025-10-13 13:45:39]  *** Contents of shared directory: ***
[2025-10-13 13:45:39] total 409424
[2025-10-13 13:45:39] -rw-r--r-- 2 boinc boinc 221037054 Oct 13 11:33 ATLAS.root_0
[2025-10-13 13:45:39] -rw-r--r-- 2 boinc boinc    569684 Oct 13 11:33 input.tar.gz
[2025-10-13 13:45:39] -rw-r--r-- 2 boinc boinc     15120 Oct 13 11:33 start_atlas.sh
[2025-10-13 13:45:39] -rw------- 1 boinc boinc 196183860 Oct 13 13:44 HITS.pool.root.1
[2025-10-13 13:45:39] -rw------- 1 boinc boinc   1423360 Oct 13 13:45 result.tar.gz
13:45:40 (2568602): run_atlas exited; CPU time 15355.950340
13:45:40 (2568602): called boinc_finish(0)

</stderr_txt>
]]>

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