Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
21:52:07 (30466): wrapper (7.7.26015): starting
21:52:07 (30466): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 21:52:07] Arguments: --nthreads 12
[2025-10-12 21:52:07] Threads: 12
[2025-10-12 21:52:07] Checking for CVMFS
[2025-10-12 21:52:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 21:52:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 21:52:07] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 21:52:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 21:52:08] 2.11.2.0 3035 223639 98928 151643 1 57 15752906 20275200 1 130560 3 109010950 99.984 13678078 12632 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 21:52:08] CVMFS is ok
[2025-10-12 21:52:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 21:52:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 21:52:08] Further information can be found at the LHC@home message board.
[2025-10-12 21:52:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 21:52:08] Checking for apptainer binary...
[2025-10-12 21:52:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 21:52:08] Running /usr/bin/apptainer --version
[2025-10-12 21:52:08] apptainer version 1.3.2-1.el7
[2025-10-12 21:52:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 21:52:09] c-205-31.aglt2.org
[2025-10-12 21:52:09] apptainer works
[2025-10-12 21:52:09] Set ATHENA_PROC_NUMBER=12
[2025-10-12 21:52:09] Set ATHENA_CORE_NUMBER=12
[2025-10-12 21:52:09] Starting ATLAS job with PandaID=6840537507
[2025-10-12 21:52:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 23:03:45]  *** The last 200 lines of the pilot log: ***
[2025-10-12 23:03:45]  storage_token=
[2025-10-12 23:03:45]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6840537507/log.46676269._086654.job.log.tgz.1
[2025-10-12 23:03:45]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d5/7e/log.46676269._086654.job.log.tgz.1
[2025-10-12 23:03:45]  workdir=None
[2025-10-12 23:03:45] ]
[2025-10-12 23:03:45] 2025-10-13 03:03:03,107 | INFO     | transferring file log.46676269._086654.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6840537507/log.46676269._086654.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 23:03:45] 2025-10-13 03:03:03,107 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6840537507/log.46676269._086654.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._086654.job
[2025-10-12 23:03:45] 2025-10-13 03:03:03,128 | INFO     | adding to output.list: log.46676269._086654.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d5/7e/log.46676269._086654.job.log.tg
[2025-10-12 23:03:45] 2025-10-13 03:03:03,129 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 23:03:45] 2025-10-13 03:03:03,129 | INFO     | summary of transferred files:
[2025-10-12 23:03:45] 2025-10-13 03:03:03,130 | INFO     |  -- lfn=log.46676269._086654.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 23:03:45] 2025-10-13 03:03:03,130 | INFO     | stage-out finished correctly
[2025-10-12 23:03:45] 2025-10-13 03:03:03,810 | INFO     | time since job start (4239s) is within the limit (172800.0s)
[2025-10-12 23:03:45] 2025-10-13 03:03:05,816 | INFO     | time since job start (4241s) is within the limit (172800.0s)
[2025-10-12 23:03:45] 2025-10-13 03:03:06,147 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 23:03:45] 2025-10-13 03:03:06,600 | INFO     | job 6840537507 has state=finished
[2025-10-12 23:03:45] 2025-10-13 03:03:06,600 | INFO     | preparing for final server update for job 6840537507 in state='finished'
[2025-10-12 23:03:45] 2025-10-13 03:03:06,610 | INFO     | this job has now completed (state=finished)
[2025-10-12 23:03:45] 2025-10-13 03:03:06,610 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 23:03:45] 2025-10-13 03:03:06,611 | INFO     | log transfer has been attempted: DONE
[2025-10-12 23:03:45] 2025-10-13 03:03:06,611 | INFO     | job 6840537507 has finished - writing final server update
[2025-10-12 23:03:45] 2025-10-13 03:03:06,611 | INFO     | total number of processed events: 400 (read)
[2025-10-12 23:03:45] 2025-10-13 03:03:06,612 | INFO     | executing command: lscpu
[2025-10-12 23:03:45] 2025-10-13 03:03:06,637 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 23:03:45] 2025-10-13 03:03:06,989 | WARNING  | process 8965 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 23:03:45] 2025-10-13 03:03:06,989 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840537507/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 23:03:45] 2025-10-13 03:03:07,079 | INFO     | number of running child processes to parent process 8965: 1
[2025-10-12 23:03:45] 2025-10-13 03:03:07,079 | INFO     | maximum number of monitored processes: 6
[2025-10-12 23:03:45] 2025-10-13 03:03:07,822 | INFO     | time since job start (4243s) is within the limit (172800.0s)
[2025-10-12 23:03:45] 2025-10-13 03:03:09,582 | INFO     | monitor loop #316: job 0:6840537507 is in state 'finished'
[2025-10-12 23:03:45] 2025-10-13 03:03:09,582 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 23:03:45] 2025-10-13 03:03:09,827 | INFO     | time since job start (4245s) is within the limit (172800.0s)
[2025-10-12 23:03:45] 2025-10-13 03:03:11,833 | INFO     | time since job start (4247s) is within the limit (172800.0s)
[2025-10-12 23:03:45] 2025-10-13 03:03:12,085 | INFO     | monitor loop #317: job 0:6840537507 is in state 'finished'
[2025-10-12 23:03:45] 2025-10-13 03:03:12,085 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 23:03:45] 2025-10-13 03:03:12,372 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 23:03:45] 2025-10-13 03:03:12,375 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-10-12 23:03:45] 2025-10-13 03:03:12,377 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840537507/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 23:03:45] 2025-10-13 03:03:12,377 | INFO     | extracted standard info from prmon json
[2025-10-12 23:03:45] 2025-10-13 03:03:12,377 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 23:03:45] 2025-10-13 03:03:12,377 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 23:03:45] 2025-10-13 03:03:12,378 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 23:03:45] 2025-10-13 03:03:12,378 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 23:03:45] 2025-10-13 03:03:12,379 | INFO     | fitting pss+swap vs Time
[2025-10-12 23:03:45] 2025-10-13 03:03:12,379 | INFO     | sum of square deviations: 73882315.5
[2025-10-12 23:03:45] 2025-10-13 03:03:12,380 | INFO     | sum of deviations: -2613012957.9999995
[2025-10-12 23:03:45] 2025-10-13 03:03:12,380 | INFO     | mean x: 1760322538.5
[2025-10-12 23:03:45] 2025-10-13 03:03:12,380 | INFO     | mean y: 2703932.419354839
[2025-10-12 23:03:45] 2025-10-13 03:03:12,380 | INFO     | -- intersect: 62260438712.8074
[2025-10-12 23:03:45] 2025-10-13 03:03:12,380 | INFO     | intersect: 62260438712.8074
[2025-10-12 23:03:45] 2025-10-13 03:03:12,380 | INFO     | chi2: 0.044178890496979456
[2025-10-12 23:03:45] 2025-10-13 03:03:12,380 | INFO     | -- intersect: 62260438712.8074
[2025-10-12 23:03:45] 2025-10-13 03:03:12,381 | INFO     | current memory leak: -35.37 B/s (using 62 data points, chi2=0.04)
[2025-10-12 23:03:45] 2025-10-13 03:03:12,381 | INFO     | could have reported an average CPU frequency of 2061 MHz (6 samples)
[2025-10-12 23:03:45] 2025-10-13 03:03:12,381 | INFO     | ..............................
[2025-10-12 23:03:45] 2025-10-13 03:03:12,381 | INFO     | . Timing measurements:
[2025-10-12 23:03:45] 2025-10-13 03:03:12,381 | INFO     | . get job = 0 s
[2025-10-12 23:03:45] 2025-10-13 03:03:12,381 | INFO     | . initial setup = 2 s
[2025-10-12 23:03:45] 2025-10-13 03:03:12,381 | INFO     | . payload setup = 7 s
[2025-10-12 23:03:45] 2025-10-13 03:03:12,381 | INFO     | . stage-in = 0 s
[2025-10-12 23:03:45] 2025-10-13 03:03:12,382 | INFO     | . payload execution = 4210 s
[2025-10-12 23:03:45] 2025-10-13 03:03:12,382 | INFO     | . stage-out = 0 s
[2025-10-12 23:03:45] 2025-10-13 03:03:12,382 | INFO     | . log creation = 0 s
[2025-10-12 23:03:45] 2025-10-13 03:03:12,382 | INFO     | ..............................
[2025-10-12 23:03:45] 2025-10-13 03:03:12,617 | INFO     | 
[2025-10-12 23:03:45] 2025-10-13 03:03:12,617 | INFO     | job summary report
[2025-10-12 23:03:45] 2025-10-13 03:03:12,617 | INFO     | --------------------------------------------------
[2025-10-12 23:03:45] 2025-10-13 03:03:12,617 | INFO     | PanDA job id: 6840537507
[2025-10-12 23:03:45] 2025-10-13 03:03:12,617 | INFO     | task id: 46676269
[2025-10-12 23:03:45] 2025-10-13 03:03:12,617 | INFO     | errors: (none)
[2025-10-12 23:03:45] 2025-10-13 03:03:12,618 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 23:03:45] 2025-10-13 03:03:12,618 | INFO     | pilot state: finished 
[2025-10-12 23:03:45] 2025-10-13 03:03:12,618 | INFO     | transexitcode: 0
[2025-10-12 23:03:45] 2025-10-13 03:03:12,618 | INFO     | exeerrorcode: 0
[2025-10-12 23:03:45] 2025-10-13 03:03:12,618 | INFO     | exeerrordiag: 
[2025-10-12 23:03:45] 2025-10-13 03:03:12,618 | INFO     | exitcode: 0
[2025-10-12 23:03:45] 2025-10-13 03:03:12,619 | INFO     | exitmsg: OK
[2025-10-12 23:03:45] 2025-10-13 03:03:12,619 | INFO     | cpuconsumptiontime: 45968 s
[2025-10-12 23:03:45] 2025-10-13 03:03:12,619 | INFO     | nevents: 400
[2025-10-12 23:03:45] 2025-10-13 03:03:12,619 | INFO     | neventsw: 0
[2025-10-12 23:03:45] 2025-10-13 03:03:12,619 | INFO     | pid: 8965
[2025-10-12 23:03:45] 2025-10-13 03:03:12,619 | INFO     | pgrp: 8965
[2025-10-12 23:03:45] 2025-10-13 03:03:12,619 | INFO     | corecount: 12
[2025-10-12 23:03:45] 2025-10-13 03:03:12,619 | INFO     | event service: False
[2025-10-12 23:03:45] 2025-10-13 03:03:12,619 | INFO     | sizes: {0: 2348855, 5: 2349117, 11: 2349173, 4221: 2375068, 4222: 2384066, 4225: 2384122, 4232: 2384444}
[2025-10-12 23:03:45] 2025-10-13 03:03:12,619 | INFO     | --------------------------------------------------
[2025-10-12 23:03:45] 2025-10-13 03:03:12,620 | INFO     | 
[2025-10-12 23:03:45] 2025-10-13 03:03:12,620 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 23:03:45] 2025-10-13 03:03:12,644 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 23:03:45] 2025-10-13 03:03:12,644 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 23:03:45] 2025-10-13 03:03:12,645 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 23:03:45] 2025-10-13 03:03:12,645 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 23:03:45] 2025-10-13 03:03:12,645 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 23:03:45] 2025-10-13 03:03:12,645 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 23:03:45] 2025-10-13 03:03:12,645 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 23:03:45] 2025-10-13 03:03:12,645 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 23:03:45] 2025-10-13 03:03:12,646 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 23:03:45] 2025-10-13 03:03:12,646 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 23:03:45] 2025-10-13 03:03:12,646 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 23:03:45] 2025-10-13 03:03:12,646 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 23:03:45] 2025-10-13 03:03:12,646 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 23:03:45] 2025-10-13 03:03:12,646 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 23:03:45] 2025-10-13 03:03:12,646 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 23:03:45] 2025-10-13 03:03:12,647 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 23:03:45] 2025-10-13 03:03:12,647 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 23:03:45] 2025-10-13 03:03:12,647 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 23:03:45] 2025-10-13 03:03:12,647 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 23:03:45] 2025-10-13 03:03:12,647 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 23:03:45] 2025-10-13 03:03:12,647 | INFO     | job 6840537507 has completed (purged errors)
[2025-10-12 23:03:45] 2025-10-13 03:03:12,648 | INFO     | overall cleanup function is called
[2025-10-12 23:03:45] 2025-10-13 03:03:13,655 | INFO     | --- collectZombieJob: --- 10, [8965]
[2025-10-12 23:03:45] 2025-10-13 03:03:13,656 | INFO     | zombie collector waiting for pid 8965
[2025-10-12 23:03:45] 2025-10-13 03:03:13,656 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 23:03:45] 2025-10-13 03:03:13,656 | INFO     | collected zombie processes
[2025-10-12 23:03:45] 2025-10-13 03:03:13,656 | INFO     | will attempt to kill all subprocesses of pid=8965
[2025-10-12 23:03:45] 2025-10-13 03:03:13,755 | INFO     | process IDs to be killed: [8965] (in reverse order)
[2025-10-12 23:03:45] 2025-10-13 03:03:13,808 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 23:03:45] 2025-10-13 03:03:13,809 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 23:03:45] 2025-10-13 03:03:13,812 | INFO     | did not find any defunct processes belonging to 8965
[2025-10-12 23:03:45] 2025-10-13 03:03:13,815 | INFO     | did not find any defunct processes belonging to 8965
[2025-10-12 23:03:45] 2025-10-13 03:03:13,816 | INFO     | ready for new job
[2025-10-12 23:03:45] 2025-10-13 03:03:13,816 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 23:03:45] 2025-10-13 03:03:13,817 | INFO     | ***************************************
[2025-10-12 23:03:45] 2025-10-13 03:03:13,817 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 23:03:45] 2025-10-13 03:03:13,817 | INFO     | ***************************************
[2025-10-12 23:03:45] 2025-10-13 03:03:13,817 | INFO     | 
[2025-10-12 23:03:45] 2025-10-13 03:03:13,818 | INFO     | architecture information:
[2025-10-12 23:03:45] 2025-10-13 03:03:13,818 | INFO     | executing command: cat /etc/os-release
[2025-10-12 23:03:45] 2025-10-13 03:03:13,834 | INFO     | cat /etc/os-release:
[2025-10-12 23:03:45] NAME="CentOS Linux"
[2025-10-12 23:03:45] VERSION="7 (Core)"
[2025-10-12 23:03:45] ID="centos"
[2025-10-12 23:03:45] ID_LIKE="rhel fedora"
[2025-10-12 23:03:45] VERSION_ID="7"
[2025-10-12 23:03:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 23:03:45] ANSI_COLOR="0;31"
[2025-10-12 23:03:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 23:03:45] HOME_URL="https://www.centos.org/"
[2025-10-12 23:03:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 23:03:45] 
[2025-10-12 23:03:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 23:03:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 23:03:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 23:03:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 23:03:45] 
[2025-10-12 23:03:45] 2025-10-13 03:03:13,834 | INFO     | ***************************************
[2025-10-12 23:03:45] 2025-10-13 03:03:14,337 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 23:03:45] 2025-10-13 03:03:14,356 | INFO     | sufficient remaining disk space (29363273728 B)
[2025-10-12 23:03:45] 2025-10-13 03:03:14,357 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 23:03:45] 2025-10-13 03:03:14,357 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 23:03:45] 2025-10-13 03:03:14,357 | INFO     | update_server=False
[2025-10-12 23:03:45] 2025-10-13 03:03:14,357 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 23:03:45] 2025-10-13 03:03:14,358 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:03:45] 2025-10-13 03:03:14,358 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 23:03:45] 2025-10-13 03:03:14,469 | INFO     | all payload control threads have been joined
[2025-10-12 23:03:45] 2025-10-13 03:03:14,588 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 23:03:45] 2025-10-13 03:03:14,588 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 23:03:45] 2025-10-13 03:03:14,588 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:03:45] 2025-10-13 03:03:14,589 | INFO     | will abort loop
[2025-10-12 23:03:45] 2025-10-13 03:03:14,607 | INFO     | all data control threads have been joined
[2025-10-12 23:03:45] 2025-10-13 03:03:14,799 | INFO     | all job control threads have been joined
[2025-10-12 23:03:45] 2025-10-13 03:03:15,363 | INFO     | [job] retrieve thread has finished
[2025-10-12 23:03:45] 2025-10-13 03:03:15,363 | INFO     | [job] queue monitor thread has finished
[2025-10-12 23:03:45] 2025-10-13 03:03:15,452 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 23:03:45] 2025-10-13 03:03:15,474 | INFO     | [payload] control thread has finished
[2025-10-12 23:03:45] 2025-10-13 03:03:15,519 | INFO     | [payload] failed_post thread has finished
[2025-10-12 23:03:45] 2025-10-13 03:03:15,594 | INFO     | [job] job monitor thread has finished
[2025-10-12 23:03:45] 2025-10-13 03:03:15,612 | INFO     | [data] control thread has finished
[2025-10-12 23:03:45] 2025-10-13 03:03:15,804 | INFO     | [job] control thread has finished
[2025-10-12 23:03:45] 2025-10-13 03:03:15,843 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 23:03:45] 2025-10-13 03:03:15,961 | INFO     | [data] copytool_in thread has finished
[2025-10-12 23:03:45] 2025-10-13 03:03:16,095 | INFO     | [payload] validate_post thread has finished
[2025-10-12 23:03:45] 2025-10-13 03:03:16,316 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 23:03:45] 2025-10-13 03:03:16,359 | INFO     | [data] copytool_out thread has finished
[2025-10-12 23:03:45] 2025-10-13 03:03:16,494 | INFO     | [job] validate thread has finished
[2025-10-12 23:03:45] 2025-10-13 03:03:16,737 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 23:03:45] 2025-10-13 03:03:16,821 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 23:03:45] 2025-10-13 03:03:20,743 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 23:03:45] 2025-10-13 03:03:30,995 | INFO     | [monitor] cgroup control has ended
[2025-10-12 23:03:45] 2025-10-13 03:03:32,551 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140065397405504)>', '<ExcThread(monitor, started 140064956856064)>']
[2025-10-12 23:03:45] 2025-10-13 03:03:37,576 | INFO     | all workflow threads have been joined
[2025-10-12 23:03:45] 2025-10-13 03:03:37,576 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 23:03:45] 2025-10-13 03:03:37,577 | INFO     | traces error code: 0
[2025-10-12 23:03:45] 2025-10-13 03:03:37,577 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 23:03:45] 2025-10-13 03:03:45,036 | INFO     | PID=1744 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 23:03:45] 2025-10-13 03:03:45,036 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 23:03:45] 2025-10-13 03:03:45,036 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 23:03:45] 2025-10-13 03:03:45,037 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 23:03:45] 2025-10-13 03:03:45,037 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 23:03:45] 2025-10-13 03:03:45,037 | INFO     | [monitor] control thread has ended
[2025-10-12 23:03:45] 2025-10-13 03:03:45,129 [wrapper] ==== pilot stdout END ====
[2025-10-12 23:03:45] 2025-10-13 03:03:45,133 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 23:03:45] 2025-10-13 03:03:45,137 [wrapper] pilotpid: 1744
[2025-10-12 23:03:45] 2025-10-13 03:03:45,141 [wrapper] Pilot exit status: 0
[2025-10-12 23:03:45] 2025-10-13 03:03:45,156 [wrapper] pandaids: 6840537507
[2025-10-12 23:03:45] 2025-10-13 03:03:45,197 [wrapper] cleanup supervisor_pilot 15499 1745
[2025-10-12 23:03:45] 2025-10-13 03:03:45,201 [wrapper] Test setup, not cleaning
[2025-10-12 23:03:45] 2025-10-13 03:03:45,205 [wrapper] apfmon messages muted
[2025-10-12 23:03:45] 2025-10-13 03:03:45,209 [wrapper] ==== wrapper stdout END ====
[2025-10-12 23:03:45] 2025-10-13 03:03:45,213 [wrapper] ==== wrapper stderr END ====
[2025-10-12 23:03:45]  *** Error codes and diagnostics ***
[2025-10-12 23:03:45]     "exeErrorCode": 0,
[2025-10-12 23:03:45]     "exeErrorDiag": "",
[2025-10-12 23:03:45]     "pilotErrorCode": 0,
[2025-10-12 23:03:45]     "pilotErrorDiag": "",
[2025-10-12 23:03:45]  *** Listing of results directory ***
[2025-10-12 23:03:45] total 411912
[2025-10-12 23:03:45] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 14:50 pilot3.tar.gz
[2025-10-12 23:03:45] -rwx------ 1 boincer umatlas     36292 Oct 12 14:51 runpilot2-wrapper.sh
[2025-10-12 23:03:45] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 14:51 queuedata.json
[2025-10-12 23:03:45] -rw-r--r-- 1 boincer umatlas       100 Oct 12 21:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 23:03:45] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 21:52 run_atlas
[2025-10-12 23:03:45] -rw-r--r-- 1 boincer umatlas       105 Oct 12 21:52 job.xml
[2025-10-12 23:03:45] -rw-r--r-- 2 boincer umatlas 222856809 Oct 12 21:52 EVNT.46676267._004426.pool.root.1
[2025-10-12 23:03:45] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 21:52 start_atlas.sh
[2025-10-12 23:03:45] drwxrwx--x 2 boincer umatlas      4096 Oct 12 21:52 shared
[2025-10-12 23:03:45] -rw-r--r-- 2 boincer umatlas    569675 Oct 12 21:52 input.tar.gz
[2025-10-12 23:03:45] -rw-r--r-- 1 boincer umatlas         0 Oct 12 21:52 boinc_lockfile
[2025-10-12 23:03:45] -rw-r--r-- 1 boincer umatlas      2549 Oct 12 21:52 pandaJob.out
[2025-10-12 23:03:45] -rw------- 1 boincer umatlas    975595 Oct 12 21:52 agis_schedconf.cvmfs.json
[2025-10-12 23:03:45] -rw------- 1 boincer umatlas   1560580 Oct 12 21:52 agis_ddmendpoints.agis.ALL.json
[2025-10-12 23:03:45] drwx------ 5 boincer umatlas      4096 Oct 12 21:52 pilot3
[2025-10-12 23:03:45] -rw------- 1 boincer umatlas 193073156 Oct 12 23:02 HITS.46676269._086654.pool.root.1
[2025-10-12 23:03:45] -rw-r--r-- 1 boincer umatlas       530 Oct 12 23:02 boinc_task_state.xml
[2025-10-12 23:03:45] -rw------- 1 boincer umatlas      1063 Oct 12 23:02 memory_monitor_summary.json
[2025-10-12 23:03:45] -rw------- 1 boincer umatlas    365190 Oct 12 23:03 log.46676269._086654.job.log.tgz.1
[2025-10-12 23:03:45] -rw-r--r-- 1 boincer umatlas      5953 Oct 12 23:03 init_data.xml
[2025-10-12 23:03:45] -rw------- 1 boincer umatlas      7847 Oct 12 23:03 heartbeat.json
[2025-10-12 23:03:45] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 23:03 boinc_mmap_file
[2025-10-12 23:03:45] -rw-r--r-- 1 boincer umatlas        27 Oct 12 23:03 wrapper_checkpoint.txt
[2025-10-12 23:03:45] -rw------- 1 boincer umatlas        95 Oct 12 23:03 pilot_heartbeat.json
[2025-10-12 23:03:45] -rw------- 1 boincer umatlas       744 Oct 12 23:03 pilotlog.txt
[2025-10-12 23:03:45] -rw------- 1 boincer umatlas    618479 Oct 12 23:03 log.46676269._086654.job.log.1
[2025-10-12 23:03:45] -rw------- 1 boincer umatlas       357 Oct 12 23:03 output.list
[2025-10-12 23:03:45] -rw-r--r-- 1 boincer umatlas       620 Oct 12 23:03 runtime_log
[2025-10-12 23:03:45] -rw------- 1 boincer umatlas   1003520 Oct 12 23:03 result.tar.gz
[2025-10-12 23:03:45] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 23:03 runtime_log.err
[2025-10-12 23:03:45] -rw------- 1 boincer umatlas       659 Oct 12 23:03 9DdMDmXLGS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmriUMDmAAZUMn.diag
[2025-10-12 23:03:45] -rw-r--r-- 1 boincer umatlas     22169 Oct 12 23:03 stderr.txt
[2025-10-12 23:03:45] HITS file was successfully produced:
[2025-10-12 23:03:45] -rw------- 1 boincer umatlas 193073156 Oct 12 23:02 shared/HITS.pool.root.1
[2025-10-12 23:03:45]  *** Contents of shared directory: ***
[2025-10-12 23:03:45] total 407748
[2025-10-12 23:03:45] -rw-r--r-- 2 boincer umatlas 222856809 Oct 12 21:52 ATLAS.root_0
[2025-10-12 23:03:45] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 21:52 start_atlas.sh
[2025-10-12 23:03:45] -rw-r--r-- 2 boincer umatlas    569675 Oct 12 21:52 input.tar.gz
[2025-10-12 23:03:45] -rw------- 1 boincer umatlas 193073156 Oct 12 23:02 HITS.pool.root.1
[2025-10-12 23:03:45] -rw------- 1 boincer umatlas   1003520 Oct 12 23:03 result.tar.gz
23:03:47 (30466): run_atlas exited; CPU time 45950.948454
23:03:47 (30466): called boinc_finish(0)

</stderr_txt>
]]>

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