Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:53:36 (3846357): wrapper (7.7.26015): starting
13:53:36 (3846357): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 13:53:36] Arguments: --nthreads 4
[2025-10-13 13:53:36] Threads: 4
[2025-10-13 13:53:36] Checking for CVMFS
[2025-10-13 13:53:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 13:53:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 13:53:36] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 13:53:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 13:53:36] 2.9.2.0 1850263 5751 99448 151660 0 57 29062483 36864000 0 130560 0 5109128 99.992 197577 735 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 13:53:36] CVMFS is ok
[2025-10-13 13:53:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 13:53:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 13:53:36] Further information can be found at the LHC@home message board.
[2025-10-13 13:53:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 13:53:36] Checking for apptainer binary...
[2025-10-13 13:53:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 13:53:36] Running /usr/bin/apptainer --version
[2025-10-13 13:53:36] apptainer version 1.4.1-1.1
[2025-10-13 13:53:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 13:53:36] thA309
[2025-10-13 13:53:36] apptainer works
[2025-10-13 13:53:36] Set ATHENA_PROC_NUMBER=4
[2025-10-13 13:53:36] Set ATHENA_CORE_NUMBER=4
[2025-10-13 13:53:36] Starting ATLAS job with PandaID=6840750469
[2025-10-13 13:53:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 15:12:57]  *** The last 200 lines of the pilot log: ***
[2025-10-13 15:12:57] 2025-10-13 13:12:22,316 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 15:12:57] 2025-10-13 13:12:22,316 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 15:12:57] 2025-10-13 13:12:22,317 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 15:12:57] 2025-10-13 13:12:22,317 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 15:12:57] 2025-10-13 13:12:22,317 | INFO     | job 6840750469 has completed (purged errors)
[2025-10-13 15:12:57] 2025-10-13 13:12:22,317 | INFO     | overall cleanup function is called
[2025-10-13 15:12:57] 2025-10-13 13:12:23,323 | INFO     | --- collectZombieJob: --- 10, [3856718]
[2025-10-13 15:12:57] 2025-10-13 13:12:23,324 | INFO     | zombie collector waiting for pid 3856718
[2025-10-13 15:12:57] 2025-10-13 13:12:23,324 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 15:12:57] 2025-10-13 13:12:23,324 | INFO     | collected zombie processes
[2025-10-13 15:12:57] 2025-10-13 13:12:23,324 | INFO     | will attempt to kill all subprocesses of pid=3856718
[2025-10-13 15:12:57] 2025-10-13 13:12:23,375 | INFO     | process IDs to be killed: [3856718] (in reverse order)
[2025-10-13 15:12:57] 2025-10-13 13:12:23,411 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 15:12:57] 2025-10-13 13:12:23,411 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 15:12:57] 2025-10-13 13:12:23,413 | INFO     | did not find any defunct processes belonging to 3856718
[2025-10-13 15:12:57] 2025-10-13 13:12:23,415 | INFO     | did not find any defunct processes belonging to 3856718
[2025-10-13 15:12:57] 2025-10-13 13:12:23,415 | INFO     | ready for new job
[2025-10-13 15:12:57] 2025-10-13 13:12:23,415 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 15:12:57] 2025-10-13 13:12:23,416 | INFO     | ***************************************
[2025-10-13 15:12:57] 2025-10-13 13:12:23,416 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 15:12:57] 2025-10-13 13:12:23,416 | INFO     | ***************************************
[2025-10-13 15:12:57] 2025-10-13 13:12:23,416 | INFO     | 
[2025-10-13 15:12:57] 2025-10-13 13:12:23,416 | INFO     | architecture information:
[2025-10-13 15:12:57] 2025-10-13 13:12:23,417 | INFO     | executing command: cat /etc/os-release
[2025-10-13 15:12:57] 2025-10-13 13:12:23,431 | INFO     | cat /etc/os-release:
[2025-10-13 15:12:57] NAME="CentOS Linux"
[2025-10-13 15:12:57] VERSION="7 (Core)"
[2025-10-13 15:12:57] ID="centos"
[2025-10-13 15:12:57] ID_LIKE="rhel fedora"
[2025-10-13 15:12:57] VERSION_ID="7"
[2025-10-13 15:12:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 15:12:57] ANSI_COLOR="0;31"
[2025-10-13 15:12:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 15:12:57] HOME_URL="https://www.centos.org/"
[2025-10-13 15:12:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 15:12:57] 
[2025-10-13 15:12:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 15:12:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 15:12:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 15:12:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 15:12:57] 
[2025-10-13 15:12:57] 2025-10-13 13:12:23,431 | INFO     | ***************************************
[2025-10-13 15:12:57] 2025-10-13 13:12:23,935 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 15:12:57] 2025-10-13 13:12:23,953 | INFO     | sufficient remaining disk space (230892240896 B)
[2025-10-13 15:12:57] 2025-10-13 13:12:23,954 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 15:12:57] 2025-10-13 13:12:23,954 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 15:12:57] 2025-10-13 13:12:23,954 | INFO     | update_server=False
[2025-10-13 15:12:57] 2025-10-13 13:12:23,954 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 15:12:57] 2025-10-13 13:12:23,954 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 15:12:57] 2025-10-13 13:12:23,954 | INFO     | aborting loop
[2025-10-13 15:12:57] 2025-10-13 13:12:23,954 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 15:12:57] 2025-10-13 13:12:24,256 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 15:12:57] 2025-10-13 13:12:24,537 | INFO     | all data control threads have been joined
[2025-10-13 15:12:57] 2025-10-13 13:12:24,656 | INFO     | all payload control threads have been joined
[2025-10-13 15:12:57] 2025-10-13 13:12:24,959 | INFO     | [job] job monitor thread has finished
[2025-10-13 15:12:57] 2025-10-13 13:12:24,960 | INFO     | [job] retrieve thread has finished
[2025-10-13 15:12:57] 2025-10-13 13:12:24,960 | INFO     | [job] queue monitor thread has finished
[2025-10-13 15:12:57] 2025-10-13 13:12:25,030 | INFO     | [payload] failed_post thread has finished
[2025-10-13 15:12:57] 2025-10-13 13:12:25,214 | INFO     | all job control threads have been joined
[2025-10-13 15:12:57] 2025-10-13 13:12:25,331 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 15:12:57] 2025-10-13 13:12:25,542 | INFO     | [data] control thread has finished
[2025-10-13 15:12:57] 2025-10-13 13:12:25,612 | INFO     | [payload] validate_post thread has finished
[2025-10-13 15:12:57] 2025-10-13 13:12:25,650 | INFO     | [job] validate thread has finished
[2025-10-13 15:12:57] 2025-10-13 13:12:25,662 | INFO     | [payload] control thread has finished
[2025-10-13 15:12:57] 2025-10-13 13:12:25,764 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 15:12:57] 2025-10-13 13:12:25,830 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 15:12:57] 2025-10-13 13:12:26,104 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 15:12:57] 2025-10-13 13:12:26,219 | INFO     | [job] control thread has finished
[2025-10-13 15:12:57] 2025-10-13 13:12:26,262 | INFO     | [data] copytool_out thread has finished
[2025-10-13 15:12:57] 2025-10-13 13:12:26,403 | INFO     | [data] copytool_in thread has finished
[2025-10-13 15:12:57] 2025-10-13 13:12:27,352 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 15:12:57] 2025-10-13 13:12:31,359 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 15:12:57] 2025-10-13 13:12:50,356 | INFO     | [monitor] cgroup control has ended
[2025-10-13 15:12:57] 2025-10-13 13:12:52,227 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140012807866176)>', '<ExcThread(monitor, started 140011429160704)>']
[2025-10-13 15:12:57] 2025-10-13 13:12:53,535 | INFO     | PID=3850149 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 15:12:57] 2025-10-13 13:12:53,535 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 15:12:57] 2025-10-13 13:12:53,535 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 15:12:57] 2025-10-13 13:12:53,535 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 15:12:57] 2025-10-13 13:12:53,535 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 15:12:57] 2025-10-13 13:12:53,535 | INFO     | [monitor] control thread has ended
[2025-10-13 15:12:57] 2025-10-13 13:12:57,253 | INFO     | all workflow threads have been joined
[2025-10-13 15:12:57] 2025-10-13 13:12:57,253 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 15:12:57] 2025-10-13 13:12:57,253 | INFO     | traces error code: 0
[2025-10-13 15:12:57] 2025-10-13 13:12:57,253 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 15:12:57] 2025-10-13 13:12:57,336 [wrapper] ==== pilot stdout END ====
[2025-10-13 15:12:57] 2025-10-13 13:12:57,340 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 15:12:57] 2025-10-13 13:12:57,344 [wrapper] pilotpid: 3850149
[2025-10-13 15:12:57] 2025-10-13 13:12:57,348 [wrapper] Pilot exit status: 0
[2025-10-13 15:12:57] 2025-10-13 13:12:57,361 [wrapper] pandaids: 6840750469
[2025-10-13 15:12:57] 2025-10-13 13:12:57,385 [wrapper] cleanup supervisor_pilot 3869557 3850150
[2025-10-13 15:12:57] 2025-10-13 13:12:57,389 [wrapper] Test setup, not cleaning
[2025-10-13 15:12:57] 2025-10-13 13:12:57,393 [wrapper] apfmon messages muted
[2025-10-13 15:12:57] 2025-10-13 13:12:57,397 [wrapper] ==== wrapper stdout END ====
[2025-10-13 15:12:57] 2025-10-13 13:12:57,401 [wrapper] ==== wrapper stderr END ====
[2025-10-13 15:12:57]  *** Error codes and diagnostics ***
[2025-10-13 15:12:57]     "exeErrorCode": 0,
[2025-10-13 15:12:57]     "exeErrorDiag": "",
[2025-10-13 15:12:57]     "pilotErrorCode": 0,
[2025-10-13 15:12:57]     "pilotErrorDiag": "",
[2025-10-13 15:12:57]  *** Listing of results directory ***
[2025-10-13 15:12:57] total 421716
[2025-10-13 15:12:57] -rw-r--r-- 1 boinc boinc    557409 Oct 12 23:12 pilot3.tar.gz
[2025-10-13 15:12:57] -rw-r--r-- 1 boinc boinc      5112 Oct 12 23:19 queuedata.json
[2025-10-13 15:12:57] -rwx------ 1 boinc boinc     36292 Oct 12 23:21 runpilot2-wrapper.sh
[2025-10-13 15:12:57] -rw-r--r-- 1 boinc boinc       100 Oct 13 13:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 15:12:57] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 13:53 run_atlas
[2025-10-13 15:12:57] -rw-r--r-- 1 boinc boinc       105 Oct 13 13:53 job.xml
[2025-10-13 15:12:57] -rw-r--r-- 2 boinc boinc 224181605 Oct 13 13:53 EVNT.46676267._004826.pool.root.1
[2025-10-13 15:12:57] -rw-r--r-- 2 boinc boinc    569680 Oct 13 13:53 input.tar.gz
[2025-10-13 15:12:57] -rw-r--r-- 2 boinc boinc     15120 Oct 13 13:53 start_atlas.sh
[2025-10-13 15:12:57] drwxrwx--x 2 boinc boinc      4096 Oct 13 13:53 shared
[2025-10-13 15:12:57] -rw-r--r-- 1 boinc boinc         0 Oct 13 13:53 boinc_setup_complete
[2025-10-13 15:12:57] -rw-r--r-- 1 boinc boinc      6377 Oct 13 13:53 init_data.xml
[2025-10-13 15:12:57] -rw-r--r-- 1 boinc boinc         0 Oct 13 13:53 boinc_lockfile
[2025-10-13 15:12:57] -rw-r--r-- 1 boinc boinc      2549 Oct 13 13:53 pandaJob.out
[2025-10-13 15:12:57] -rw------- 1 boinc boinc    972497 Oct 13 13:53 agis_schedconf.cvmfs.json
[2025-10-13 15:12:57] -rw------- 1 boinc boinc   1560580 Oct 13 13:53 agis_ddmendpoints.agis.ALL.json
[2025-10-13 15:12:57] drwx------ 5 boinc boinc      4096 Oct 13 13:53 pilot3
[2025-10-13 15:12:57] -rw------- 1 boinc boinc 201818633 Oct 13 15:11 HITS.46676269._089841.pool.root.1
[2025-10-13 15:12:57] -rw-r--r-- 1 boinc boinc       529 Oct 13 15:12 boinc_task_state.xml
[2025-10-13 15:12:57] -rw------- 1 boinc boinc        95 Oct 13 15:12 pilot_heartbeat.json
[2025-10-13 15:12:57] -rw------- 1 boinc boinc      1019 Oct 13 15:12 memory_monitor_summary.json
[2025-10-13 15:12:57] -rw------- 1 boinc boinc    275587 Oct 13 15:12 log.46676269._089841.job.log.tgz.1
[2025-10-13 15:12:57] -rw------- 1 boinc boinc      7762 Oct 13 15:12 heartbeat.json
[2025-10-13 15:12:57] -rw-r--r-- 1 boinc boinc      8192 Oct 13 15:12 boinc_mmap_file
[2025-10-13 15:12:57] -rw-r--r-- 1 boinc boinc        27 Oct 13 15:12 wrapper_checkpoint.txt
[2025-10-13 15:12:57] -rw------- 1 boinc boinc      4752 Oct 13 15:12 pilotlog.txt
[2025-10-13 15:12:57] -rw------- 1 boinc boinc    695946 Oct 13 15:12 log.46676269._089841.job.log.1
[2025-10-13 15:12:57] -rw------- 1 boinc boinc       357 Oct 13 15:12 output.list
[2025-10-13 15:12:57] -rw-r--r-- 1 boinc boinc       620 Oct 13 15:12 runtime_log
[2025-10-13 15:12:57] -rw------- 1 boinc boinc    993280 Oct 13 15:12 result.tar.gz
[2025-10-13 15:12:57] -rw-r--r-- 1 boinc boinc      8777 Oct 13 15:12 runtime_log.err
[2025-10-13 15:12:57] -rw------- 1 boinc boinc       658 Oct 13 15:12 0zqLDmjgIS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm2dlNDmOrk7Fn.diag
[2025-10-13 15:12:57] -rw-r--r-- 1 boinc boinc     11212 Oct 13 15:12 stderr.txt
[2025-10-13 15:12:57] HITS file was successfully produced:
[2025-10-13 15:12:57] -rw------- 1 boinc boinc 201818633 Oct 13 15:11 shared/HITS.pool.root.1
[2025-10-13 15:12:57]  *** Contents of shared directory: ***
[2025-10-13 15:12:57] total 417576
[2025-10-13 15:12:57] -rw-r--r-- 2 boinc boinc 224181605 Oct 13 13:53 ATLAS.root_0
[2025-10-13 15:12:57] -rw-r--r-- 2 boinc boinc    569680 Oct 13 13:53 input.tar.gz
[2025-10-13 15:12:57] -rw-r--r-- 2 boinc boinc     15120 Oct 13 13:53 start_atlas.sh
[2025-10-13 15:12:57] -rw------- 1 boinc boinc 201818633 Oct 13 15:11 HITS.pool.root.1
[2025-10-13 15:12:57] -rw------- 1 boinc boinc    993280 Oct 13 15:12 result.tar.gz
15:12:59 (3846357): run_atlas exited; CPU time 17780.735092
15:12:59 (3846357): called boinc_finish(0)

</stderr_txt>
]]>

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