Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
21:49:54 (6793): wrapper (7.7.26015): starting
21:49:54 (6793): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 21:49:54] Arguments: --nthreads 8
[2025-10-12 21:49:54] Threads: 8
[2025-10-12 21:49:54] Checking for CVMFS
[2025-10-12 21:49:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 21:49:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 21:49:55] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 21:49:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 21:49:55] 2.11.2.0 28705 53844 124140 151643 3 188 16709598 18432001 1833 130560 0 49255046 99.976 2413714 37271 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 21:49:55] CVMFS is ok
[2025-10-12 21:49:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 21:49:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 21:49:55] Further information can be found at the LHC@home message board.
[2025-10-12 21:49:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 21:49:55] Checking for apptainer binary...
[2025-10-12 21:49:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 21:49:55] Running /usr/bin/apptainer --version
[2025-10-12 21:49:55] apptainer version 1.3.2-1.el7
[2025-10-12 21:49:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 21:49:56] c-206-27.aglt2.org
[2025-10-12 21:49:56] apptainer works
[2025-10-12 21:49:56] Set ATHENA_PROC_NUMBER=8
[2025-10-12 21:49:56] Set ATHENA_CORE_NUMBER=8
[2025-10-12 21:49:56] Starting ATLAS job with PandaID=6840750833
[2025-10-12 21:49:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 00:46:29]  *** The last 200 lines of the pilot log: ***
[2025-10-13 00:46:29] 2025-10-13 04:45:42,700 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 00:46:29] 2025-10-13 04:45:42,700 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 00:46:29] 2025-10-13 04:45:42,705 | INFO     | fitting pss+swap vs Time
[2025-10-13 00:46:29] 2025-10-13 04:45:42,706 | INFO     | sum of square deviations: 1605470102.0
[2025-10-13 00:46:29] 2025-10-13 04:45:42,707 | INFO     | sum of deviations: 17937871731.0
[2025-10-13 00:46:29] 2025-10-13 04:45:42,707 | INFO     | mean x: 1760325478.0
[2025-10-13 00:46:29] 2025-10-13 04:45:42,708 | INFO     | mean y: 2444946.9190751445
[2025-10-13 00:46:29] 2025-10-13 04:45:42,708 | INFO     | -- intersect: -19665621490.343838
[2025-10-13 00:46:29] 2025-10-13 04:45:42,708 | INFO     | intersect: -19665621490.343838
[2025-10-13 00:46:29] 2025-10-13 04:45:42,708 | INFO     | chi2: 2.260953898869517
[2025-10-13 00:46:29] 2025-10-13 04:45:42,709 | INFO     | sum of square deviations: 1470248962.0
[2025-10-13 00:46:29] 2025-10-13 04:45:42,710 | INFO     | sum of deviations: 28822563135.000004
[2025-10-13 00:46:29] 2025-10-13 04:45:42,710 | INFO     | mean x: 1760325325.5
[2025-10-13 00:46:29] 2025-10-13 04:45:42,711 | INFO     | mean y: 2456914.273809524
[2025-10-13 00:46:29] 2025-10-13 04:45:42,711 | INFO     | -- intersect: -34506724281.36861
[2025-10-13 00:46:29] 2025-10-13 04:45:42,711 | INFO     | intersect: -34506724281.36861
[2025-10-13 00:46:29] 2025-10-13 04:45:42,711 | INFO     | chi2: 1.4458848230386099
[2025-10-13 00:46:29] 2025-10-13 04:45:42,712 | INFO     | current chi2=1.4458848230386099 (change=36.0497874918389 %)
[2025-10-13 00:46:29] 2025-10-13 04:45:42,712 | INFO     | sum of square deviations: 1342841922.0
[2025-10-13 00:46:29] 2025-10-13 04:45:42,713 | INFO     | sum of deviations: 27833694879.999996
[2025-10-13 00:46:29] 2025-10-13 04:45:42,714 | INFO     | mean x: 1760325173.0
[2025-10-13 00:46:29] 2025-10-13 04:45:42,714 | INFO     | mean y: 2455730.3312883438
[2025-10-13 00:46:29] 2025-10-13 04:45:42,714 | INFO     | -- intersect: -36484604252.046295
[2025-10-13 00:46:29] 2025-10-13 04:45:42,714 | INFO     | intersect: -36484604252.046295
[2025-10-13 00:46:29] 2025-10-13 04:45:42,715 | INFO     | chi2: 1.4466930630812056
[2025-10-13 00:46:29] 2025-10-13 04:45:42,715 | INFO     | current chi2=1.4466930630812056 (change=-0.055899337880672785 %)
[2025-10-13 00:46:29] 2025-10-13 04:45:42,715 | INFO     | right removable region: 162
[2025-10-13 00:46:29] 2025-10-13 04:45:42,715 | INFO     | sum of square deviations: 1470248962.0
[2025-10-13 00:46:29] 2025-10-13 04:45:42,717 | INFO     | sum of deviations: -8485846243.5
[2025-10-13 00:46:29] 2025-10-13 04:45:42,717 | INFO     | mean x: 1760325630.5
[2025-10-13 00:46:29] 2025-10-13 04:45:42,717 | INFO     | mean y: 2474384.886904762
[2025-10-13 00:46:29] 2025-10-13 04:45:42,717 | INFO     | -- intersect: 10162558170.013355
[2025-10-13 00:46:29] 2025-10-13 04:45:42,717 | INFO     | intersect: 10162558170.013355
[2025-10-13 00:46:29] 2025-10-13 04:45:42,718 | INFO     | chi2: 0.8648959071857213
[2025-10-13 00:46:29] 2025-10-13 04:45:42,718 | INFO     | current chi2=0.8648959071857213 (change=61.74641563376538 %)
[2025-10-13 00:46:29] 2025-10-13 04:45:42,718 | INFO     | sum of square deviations: 1342841922.0
[2025-10-13 00:46:29] 2025-10-13 04:45:42,720 | INFO     | sum of deviations: -10282910788.0
[2025-10-13 00:46:29] 2025-10-13 04:45:42,720 | INFO     | mean x: 1760325783.0
[2025-10-13 00:46:29] 2025-10-13 04:45:42,720 | INFO     | mean y: 2476474.036809816
[2025-10-13 00:46:29] 2025-10-13 04:45:42,720 | INFO     | -- intersect: 13482300634.907211
[2025-10-13 00:46:29] 2025-10-13 04:45:42,720 | INFO     | intersect: 13482300634.907211
[2025-10-13 00:46:29] 2025-10-13 04:45:42,721 | INFO     | chi2: 0.8475381559781615
[2025-10-13 00:46:29] 2025-10-13 04:45:42,721 | INFO     | current chi2=0.8475381559781615 (change=2.00691794970334 %)
[2025-10-13 00:46:29] 2025-10-13 04:45:42,721 | INFO     | left removable region: 20
[2025-10-13 00:46:29] 2025-10-13 04:45:42,722 | INFO     | sum of square deviations: 887813855.5
[2025-10-13 00:46:29] 2025-10-13 04:45:42,723 | INFO     | sum of deviations: 2270074343.5
[2025-10-13 00:46:29] 2025-10-13 04:45:42,723 | INFO     | mean x: 1760325752.5
[2025-10-13 00:46:29] 2025-10-13 04:45:42,723 | INFO     | mean y: 2487591.2746478873
[2025-10-13 00:46:29] 2025-10-13 04:45:42,723 | INFO     | -- intersect: -4498535119.958069
[2025-10-13 00:46:29] 2025-10-13 04:45:42,723 | INFO     | intersect: -4498535119.958069
[2025-10-13 00:46:29] 2025-10-13 04:45:42,724 | INFO     | chi2: 0.00020094150083455517
[2025-10-13 00:46:29] 2025-10-13 04:45:42,724 | INFO     | -- intersect: -4498535119.958069
[2025-10-13 00:46:29] 2025-10-13 04:45:42,724 | INFO     | current memory leak: 2.56 B/s (using 142 data points, chi2=0.00)
[2025-10-13 00:46:29] 2025-10-13 04:45:42,725 | INFO     | could have reported an average CPU frequency of 2554 MHz (9 samples)
[2025-10-13 00:46:29] 2025-10-13 04:45:42,725 | INFO     | ..............................
[2025-10-13 00:46:29] 2025-10-13 04:45:42,725 | INFO     | . Timing measurements:
[2025-10-13 00:46:29] 2025-10-13 04:45:42,725 | INFO     | . get job = 0 s
[2025-10-13 00:46:29] 2025-10-13 04:45:42,726 | INFO     | . initial setup = 2 s
[2025-10-13 00:46:29] 2025-10-13 04:45:42,726 | INFO     | . payload setup = 4 s
[2025-10-13 00:46:29] 2025-10-13 04:45:42,726 | INFO     | . stage-in = 0 s
[2025-10-13 00:46:29] 2025-10-13 04:45:42,726 | INFO     | . payload execution = 10502 s
[2025-10-13 00:46:29] 2025-10-13 04:45:42,726 | INFO     | . stage-out = 0 s
[2025-10-13 00:46:29] 2025-10-13 04:45:42,726 | INFO     | . log creation = 0 s
[2025-10-13 00:46:29] 2025-10-13 04:45:42,727 | INFO     | ..............................
[2025-10-13 00:46:29] 2025-10-13 04:45:42,867 | INFO     | 
[2025-10-13 00:46:29] 2025-10-13 04:45:42,867 | INFO     | job summary report
[2025-10-13 00:46:29] 2025-10-13 04:45:42,867 | INFO     | --------------------------------------------------
[2025-10-13 00:46:29] 2025-10-13 04:45:42,867 | INFO     | PanDA job id: 6840750833
[2025-10-13 00:46:29] 2025-10-13 04:45:42,867 | INFO     | task id: 46676269
[2025-10-13 00:46:29] 2025-10-13 04:45:42,867 | INFO     | errors: (none)
[2025-10-13 00:46:29] 2025-10-13 04:45:42,868 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 00:46:29] 2025-10-13 04:45:42,868 | INFO     | pilot state: finished 
[2025-10-13 00:46:29] 2025-10-13 04:45:42,868 | INFO     | transexitcode: 0
[2025-10-13 00:46:29] 2025-10-13 04:45:42,868 | INFO     | exeerrorcode: 0
[2025-10-13 00:46:29] 2025-10-13 04:45:42,868 | INFO     | exeerrordiag: 
[2025-10-13 00:46:29] 2025-10-13 04:45:42,868 | INFO     | exitcode: 0
[2025-10-13 00:46:29] 2025-10-13 04:45:42,868 | INFO     | exitmsg: OK
[2025-10-13 00:46:29] 2025-10-13 04:45:42,868 | INFO     | cpuconsumptiontime: 78804 s
[2025-10-13 00:46:29] 2025-10-13 04:45:42,868 | INFO     | nevents: 400
[2025-10-13 00:46:29] 2025-10-13 04:45:42,868 | INFO     | neventsw: 0
[2025-10-13 00:46:29] 2025-10-13 04:45:42,868 | INFO     | pid: 17764
[2025-10-13 00:46:29] 2025-10-13 04:45:42,869 | INFO     | pgrp: 17764
[2025-10-13 00:46:29] 2025-10-13 04:45:42,869 | INFO     | corecount: 8
[2025-10-13 00:46:29] 2025-10-13 04:45:42,869 | INFO     | event service: False
[2025-10-13 00:46:29] 2025-10-13 04:45:42,869 | INFO     | sizes: {0: 2348029, 1: 2348885, 2: 2348885, 5: 2349175, 12: 2349231, 10510: 2378045, 10511: 2387043, 10515: 2387099, 10520: 2387357}
[2025-10-13 00:46:29] 2025-10-13 04:45:42,869 | INFO     | --------------------------------------------------
[2025-10-13 00:46:29] 2025-10-13 04:45:42,869 | INFO     | 
[2025-10-13 00:46:29] 2025-10-13 04:45:42,869 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-13 00:46:29] 2025-10-13 04:45:42,883 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 00:46:29] 2025-10-13 04:45:42,883 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 00:46:29] 2025-10-13 04:45:42,883 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 00:46:29] 2025-10-13 04:45:42,883 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 00:46:29] 2025-10-13 04:45:42,883 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 00:46:29] 2025-10-13 04:45:42,884 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 00:46:29] 2025-10-13 04:45:42,884 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 00:46:29] 2025-10-13 04:45:42,884 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 00:46:29] 2025-10-13 04:45:42,884 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 00:46:29] 2025-10-13 04:45:42,884 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 00:46:29] 2025-10-13 04:45:42,884 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 00:46:29] 2025-10-13 04:45:42,884 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 00:46:29] 2025-10-13 04:45:42,884 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 00:46:29] 2025-10-13 04:45:42,884 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 00:46:29] 2025-10-13 04:45:42,884 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 00:46:29] 2025-10-13 04:45:42,885 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 00:46:29] 2025-10-13 04:45:42,885 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 00:46:29] 2025-10-13 04:45:42,885 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 00:46:29] 2025-10-13 04:45:42,885 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 00:46:29] 2025-10-13 04:45:42,885 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 00:46:29] 2025-10-13 04:45:42,885 | INFO     | job 6840750833 has completed (purged errors)
[2025-10-13 00:46:29] 2025-10-13 04:45:42,885 | INFO     | overall cleanup function is called
[2025-10-13 00:46:29] 2025-10-13 04:45:43,892 | INFO     | --- collectZombieJob: --- 10, [17764]
[2025-10-13 00:46:29] 2025-10-13 04:45:43,893 | INFO     | zombie collector waiting for pid 17764
[2025-10-13 00:46:29] 2025-10-13 04:45:43,893 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 00:46:29] 2025-10-13 04:45:43,893 | INFO     | collected zombie processes
[2025-10-13 00:46:29] 2025-10-13 04:45:43,893 | INFO     | will attempt to kill all subprocesses of pid=17764
[2025-10-13 00:46:29] 2025-10-13 04:45:44,034 | INFO     | process IDs to be killed: [17764] (in reverse order)
[2025-10-13 00:46:29] 2025-10-13 04:45:44,093 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 00:46:29] 2025-10-13 04:45:44,093 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 00:46:29] 2025-10-13 04:45:44,099 | INFO     | did not find any defunct processes belonging to 17764
[2025-10-13 00:46:29] 2025-10-13 04:45:44,104 | INFO     | did not find any defunct processes belonging to 17764
[2025-10-13 00:46:29] 2025-10-13 04:45:44,105 | INFO     | ready for new job
[2025-10-13 00:46:29] 2025-10-13 04:45:44,105 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 00:46:29] 2025-10-13 04:45:44,107 | INFO     | ***************************************
[2025-10-13 00:46:29] 2025-10-13 04:45:44,107 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 00:46:29] 2025-10-13 04:45:44,107 | INFO     | ***************************************
[2025-10-13 00:46:29] 2025-10-13 04:45:44,107 | INFO     | 
[2025-10-13 00:46:29] 2025-10-13 04:45:44,108 | INFO     | architecture information:
[2025-10-13 00:46:29] 2025-10-13 04:45:44,109 | INFO     | executing command: cat /etc/os-release
[2025-10-13 00:46:29] 2025-10-13 04:45:44,124 | INFO     | cat /etc/os-release:
[2025-10-13 00:46:29] NAME="CentOS Linux"
[2025-10-13 00:46:29] VERSION="7 (Core)"
[2025-10-13 00:46:29] ID="centos"
[2025-10-13 00:46:29] ID_LIKE="rhel fedora"
[2025-10-13 00:46:29] VERSION_ID="7"
[2025-10-13 00:46:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 00:46:29] ANSI_COLOR="0;31"
[2025-10-13 00:46:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 00:46:29] HOME_URL="https://www.centos.org/"
[2025-10-13 00:46:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 00:46:29] 
[2025-10-13 00:46:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 00:46:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 00:46:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 00:46:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 00:46:29] 
[2025-10-13 00:46:29] 2025-10-13 04:45:44,125 | INFO     | ***************************************
[2025-10-13 00:46:29] 2025-10-13 04:45:44,628 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-13 00:46:29] 2025-10-13 04:45:44,644 | INFO     | sufficient remaining disk space (28408020992 B)
[2025-10-13 00:46:29] 2025-10-13 04:45:44,645 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 00:46:29] 2025-10-13 04:45:44,645 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 00:46:29] 2025-10-13 04:45:44,645 | INFO     | update_server=False
[2025-10-13 00:46:29] 2025-10-13 04:45:44,645 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 00:46:29] 2025-10-13 04:45:44,646 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 00:46:29] 2025-10-13 04:45:44,646 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 00:46:29] 2025-10-13 04:45:44,646 | INFO     | aborting loop
[2025-10-13 00:46:29] 2025-10-13 04:45:44,891 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 00:46:29] 2025-10-13 04:45:45,003 | INFO     | all data control threads have been joined
[2025-10-13 00:46:29] 2025-10-13 04:45:45,650 | INFO     | [job] retrieve thread has finished
[2025-10-13 00:46:29] 2025-10-13 04:45:45,651 | INFO     | [job] queue monitor thread has finished
[2025-10-13 00:46:29] 2025-10-13 04:45:45,651 | INFO     | [job] job monitor thread has finished
[2025-10-13 00:46:29] 2025-10-13 04:45:45,808 | INFO     | all job control threads have been joined
[2025-10-13 00:46:29] 2025-10-13 04:45:45,808 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 00:46:29] 2025-10-13 04:45:45,982 | INFO     | [job] validate thread has finished
[2025-10-13 00:46:29] 2025-10-13 04:45:46,007 | INFO     | [data] control thread has finished
[2025-10-13 00:46:29] 2025-10-13 04:45:46,076 | INFO     | all payload control threads have been joined
[2025-10-13 00:46:29] 2025-10-13 04:45:46,210 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 00:46:29] 2025-10-13 04:45:46,298 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 00:46:29] 2025-10-13 04:45:46,643 | INFO     | [payload] failed_post thread has finished
[2025-10-13 00:46:29] 2025-10-13 04:45:46,813 | INFO     | [job] control thread has finished
[2025-10-13 00:46:29] 2025-10-13 04:45:46,896 | INFO     | [data] copytool_out thread has finished
[2025-10-13 00:46:29] 2025-10-13 04:45:47,081 | INFO     | [payload] control thread has finished
[2025-10-13 00:46:29] 2025-10-13 04:45:47,142 | INFO     | [data] copytool_in thread has finished
[2025-10-13 00:46:29] 2025-10-13 04:45:47,182 | INFO     | [payload] validate_post thread has finished
[2025-10-13 00:46:29] 2025-10-13 04:45:47,970 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 00:46:29] 2025-10-13 04:45:51,978 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 00:46:29] 2025-10-13 04:45:54,840 | INFO     | job.realtimelogging is not enabled
[2025-10-13 00:46:29] 2025-10-13 04:45:55,842 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 00:46:29] 2025-10-13 04:46:15,047 | INFO     | PID=11274 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 00:46:29] 2025-10-13 04:46:15,047 | INFO     | .. there are 3 such processes running
[2025-10-13 00:46:29] 2025-10-13 04:46:15,048 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 00:46:29] 2025-10-13 04:46:15,048 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 00:46:29] 2025-10-13 04:46:15,048 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 00:46:29] 2025-10-13 04:46:23,679 | INFO     | [monitor] cgroup control has ended
[2025-10-13 00:46:29] 2025-10-13 04:46:23,826 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139647257962304)>', '<ExcThread(monitor, started 139646667306752)>']
[2025-10-13 00:46:29] 2025-10-13 04:46:24,098 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 00:46:29] 2025-10-13 04:46:24,098 | INFO     | [monitor] control thread has ended
[2025-10-13 00:46:29] 2025-10-13 04:46:28,853 | INFO     | all workflow threads have been joined
[2025-10-13 00:46:29] 2025-10-13 04:46:28,853 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 00:46:29] 2025-10-13 04:46:28,854 | INFO     | traces error code: 0
[2025-10-13 00:46:29] 2025-10-13 04:46:28,854 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 00:46:29] 2025-10-13 04:46:28,957 [wrapper] ==== pilot stdout END ====
[2025-10-13 00:46:29] 2025-10-13 04:46:28,959 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 00:46:29] 2025-10-13 04:46:28,961 [wrapper] pilotpid: 11274
[2025-10-13 00:46:29] 2025-10-13 04:46:28,964 [wrapper] Pilot exit status: 0
[2025-10-13 00:46:29] 2025-10-13 04:46:28,973 [wrapper] pandaids: 6840750833
[2025-10-13 00:46:29] 2025-10-13 04:46:29,011 [wrapper] cleanup supervisor_pilot 21954 11275
[2025-10-13 00:46:29] 2025-10-13 04:46:29,013 [wrapper] Test setup, not cleaning
[2025-10-13 00:46:29] 2025-10-13 04:46:29,015 [wrapper] apfmon messages muted
[2025-10-13 00:46:29] 2025-10-13 04:46:29,018 [wrapper] ==== wrapper stdout END ====
[2025-10-13 00:46:29] 2025-10-13 04:46:29,020 [wrapper] ==== wrapper stderr END ====
[2025-10-13 00:46:29]  *** Error codes and diagnostics ***
[2025-10-13 00:46:29]     "exeErrorCode": 0,
[2025-10-13 00:46:29]     "exeErrorDiag": "",
[2025-10-13 00:46:29]     "pilotErrorCode": 0,
[2025-10-13 00:46:29]     "pilotErrorDiag": "",
[2025-10-13 00:46:29]  *** Listing of results directory ***
[2025-10-13 00:46:29] total 414716
[2025-10-13 00:46:29] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 17:31 queuedata.json
[2025-10-13 00:46:29] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 17:31 pilot3.tar.gz
[2025-10-13 00:46:29] -rwx------ 1 boincer umatlas     36292 Oct 12 17:32 runpilot2-wrapper.sh
[2025-10-13 00:46:29] -rw-r--r-- 1 boincer umatlas       100 Oct 12 21:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 00:46:29] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 21:49 run_atlas
[2025-10-13 00:46:29] -rw-r--r-- 1 boincer umatlas       105 Oct 12 21:49 job.xml
[2025-10-13 00:46:29] -rw-r--r-- 2 boincer umatlas 220744342 Oct 12 21:49 EVNT.46676267._004835.pool.root.1
[2025-10-13 00:46:29] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 21:49 start_atlas.sh
[2025-10-13 00:46:29] drwxrwx--x 2 boincer umatlas      4096 Oct 12 21:49 shared
[2025-10-13 00:46:29] -rw-r--r-- 2 boincer umatlas    569680 Oct 12 21:49 input.tar.gz
[2025-10-13 00:46:29] -rw-r--r-- 1 boincer umatlas         0 Oct 12 21:49 boinc_lockfile
[2025-10-13 00:46:29] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 21:49 pandaJob.out
[2025-10-13 00:46:29] -rw------- 1 boincer umatlas    975595 Oct 12 21:50 agis_schedconf.cvmfs.json
[2025-10-13 00:46:29] -rw------- 1 boincer umatlas   1560580 Oct 12 21:50 agis_ddmendpoints.agis.ALL.json
[2025-10-13 00:46:29] drwx------ 5 boincer umatlas      4096 Oct 12 21:50 pilot3
[2025-10-13 00:46:29] -rw-r--r-- 1 boincer umatlas      5952 Oct 13 00:38 init_data.xml
[2025-10-13 00:46:29] -rw------- 1 boincer umatlas 196230516 Oct 13 00:45 HITS.46676269._090052.pool.root.1
[2025-10-13 00:46:29] -rw-r--r-- 1 boincer umatlas       531 Oct 13 00:45 boinc_task_state.xml
[2025-10-13 00:46:29] -rw------- 1 boincer umatlas      1054 Oct 13 00:45 memory_monitor_summary.json
[2025-10-13 00:46:29] -rw------- 1 boincer umatlas        95 Oct 13 00:45 pilot_heartbeat.json
[2025-10-13 00:46:29] -rw------- 1 boincer umatlas    406274 Oct 13 00:45 log.46676269._090052.job.log.tgz.1
[2025-10-13 00:46:29] -rw------- 1 boincer umatlas      7854 Oct 13 00:45 heartbeat.json
[2025-10-13 00:46:29] -rw-r--r-- 1 boincer umatlas        28 Oct 13 00:46 wrapper_checkpoint.txt
[2025-10-13 00:46:29] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 00:46 boinc_mmap_file
[2025-10-13 00:46:29] -rw------- 1 boincer umatlas      4893 Oct 13 00:46 pilotlog.txt
[2025-10-13 00:46:29] -rw------- 1 boincer umatlas   1485524 Oct 13 00:46 log.46676269._090052.job.log.1
[2025-10-13 00:46:29] -rw------- 1 boincer umatlas       357 Oct 13 00:46 output.list
[2025-10-13 00:46:29] -rw-r--r-- 1 boincer umatlas       620 Oct 13 00:46 runtime_log
[2025-10-13 00:46:29] -rw------- 1 boincer umatlas   1914880 Oct 13 00:46 result.tar.gz
[2025-10-13 00:46:29] -rw-r--r-- 1 boincer umatlas      8704 Oct 13 00:46 runtime_log.err
[2025-10-13 00:46:29] -rw------- 1 boincer umatlas       661 Oct 13 00:46 rBBODmarIS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm3glNDmDucstm.diag
[2025-10-13 00:46:29] -rw-r--r-- 1 boincer umatlas     20878 Oct 13 00:46 stderr.txt
[2025-10-13 00:46:29] HITS file was successfully produced:
[2025-10-13 00:46:29] -rw------- 1 boincer umatlas 196230516 Oct 13 00:45 shared/HITS.pool.root.1
[2025-10-13 00:46:29]  *** Contents of shared directory: ***
[2025-10-13 00:46:29] total 409660
[2025-10-13 00:46:29] -rw-r--r-- 2 boincer umatlas 220744342 Oct 12 21:49 ATLAS.root_0
[2025-10-13 00:46:29] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 21:49 start_atlas.sh
[2025-10-13 00:46:29] -rw-r--r-- 2 boincer umatlas    569680 Oct 12 21:49 input.tar.gz
[2025-10-13 00:46:29] -rw------- 1 boincer umatlas 196230516 Oct 13 00:45 HITS.pool.root.1
[2025-10-13 00:46:29] -rw------- 1 boincer umatlas   1914880 Oct 13 00:46 result.tar.gz
00:46:30 (6793): run_atlas exited; CPU time 78937.923137
00:46:30 (6793): called boinc_finish(0)

</stderr_txt>
]]>

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