Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:08:49 (2651775): wrapper (7.7.26015): starting
13:08:49 (2651775): wrapper: running run_atlas (--nthreads 2)
[2025-10-13 13:08:49] Arguments: --nthreads 2
[2025-10-13 13:08:49] Threads: 2
[2025-10-13 13:08:49] Checking for CVMFS
[2025-10-13 13:08:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 13:08:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 13:08:49] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 13:08:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 13:08:49] 2.9.2.0 1359891 5626 63332 151659 0 56 27703675 36864000 0 130560 0 3408833 99.989 192656 792 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 13:08:49] CVMFS is ok
[2025-10-13 13:08:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 13:08:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 13:08:49] Further information can be found at the LHC@home message board.
[2025-10-13 13:08:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 13:08:49] Checking for apptainer binary...
[2025-10-13 13:08:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 13:08:49] Running /usr/bin/apptainer --version
[2025-10-13 13:08:49] apptainer version 1.4.1-1.1
[2025-10-13 13:08:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 13:08:49] madmaxA275
[2025-10-13 13:08:49] apptainer works
[2025-10-13 13:08:49] Set ATHENA_PROC_NUMBER=2
[2025-10-13 13:08:49] Set ATHENA_CORE_NUMBER=2
[2025-10-13 13:08:49] Starting ATLAS job with PandaID=6840750734
[2025-10-13 13:08:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 15:15:27]  *** The last 200 lines of the pilot log: ***
[2025-10-13 15:15:27] 2025-10-13 13:14:55,004 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 15:15:27] 2025-10-13 13:14:55,004 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 15:15:27] 2025-10-13 13:14:55,004 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 15:15:27] 2025-10-13 13:14:55,004 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 15:15:27] 2025-10-13 13:14:55,004 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 15:15:27] 2025-10-13 13:14:55,004 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 15:15:27] 2025-10-13 13:14:55,004 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 15:15:27] 2025-10-13 13:14:55,005 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 15:15:27] 2025-10-13 13:14:55,005 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 15:15:27] 2025-10-13 13:14:55,005 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 15:15:27] 2025-10-13 13:14:55,005 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 15:15:27] 2025-10-13 13:14:55,005 | INFO     | job 6840750734 has completed (purged errors)
[2025-10-13 15:15:27] 2025-10-13 13:14:55,005 | INFO     | overall cleanup function is called
[2025-10-13 15:15:27] 2025-10-13 13:14:56,011 | INFO     | --- collectZombieJob: --- 10, [2661896]
[2025-10-13 15:15:27] 2025-10-13 13:14:56,011 | INFO     | zombie collector waiting for pid 2661896
[2025-10-13 15:15:27] 2025-10-13 13:14:56,012 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 15:15:27] 2025-10-13 13:14:56,012 | INFO     | collected zombie processes
[2025-10-13 15:15:27] 2025-10-13 13:14:56,012 | INFO     | will attempt to kill all subprocesses of pid=2661896
[2025-10-13 15:15:27] 2025-10-13 13:14:56,045 | INFO     | process IDs to be killed: [2661896] (in reverse order)
[2025-10-13 15:15:27] 2025-10-13 13:14:56,066 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 15:15:27] 2025-10-13 13:14:56,066 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 15:15:27] 2025-10-13 13:14:56,066 | INFO     | did not find any defunct processes belonging to 2661896
[2025-10-13 15:15:27] 2025-10-13 13:14:56,067 | INFO     | did not find any defunct processes belonging to 2661896
[2025-10-13 15:15:27] 2025-10-13 13:14:56,067 | INFO     | ready for new job
[2025-10-13 15:15:27] 2025-10-13 13:14:56,067 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 15:15:27] 2025-10-13 13:14:56,068 | INFO     | ***************************************
[2025-10-13 15:15:27] 2025-10-13 13:14:56,068 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 15:15:27] 2025-10-13 13:14:56,068 | INFO     | ***************************************
[2025-10-13 15:15:27] 2025-10-13 13:14:56,068 | INFO     | 
[2025-10-13 15:15:27] 2025-10-13 13:14:56,068 | INFO     | architecture information:
[2025-10-13 15:15:27] 2025-10-13 13:14:56,068 | INFO     | executing command: cat /etc/os-release
[2025-10-13 15:15:27] 2025-10-13 13:14:56,076 | INFO     | cat /etc/os-release:
[2025-10-13 15:15:27] NAME="CentOS Linux"
[2025-10-13 15:15:27] VERSION="7 (Core)"
[2025-10-13 15:15:27] ID="centos"
[2025-10-13 15:15:27] ID_LIKE="rhel fedora"
[2025-10-13 15:15:27] VERSION_ID="7"
[2025-10-13 15:15:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 15:15:27] ANSI_COLOR="0;31"
[2025-10-13 15:15:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 15:15:27] HOME_URL="https://www.centos.org/"
[2025-10-13 15:15:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 15:15:27] 
[2025-10-13 15:15:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 15:15:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 15:15:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 15:15:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 15:15:27] 
[2025-10-13 15:15:27] 2025-10-13 13:14:56,076 | INFO     | ***************************************
[2025-10-13 15:15:27] 2025-10-13 13:14:56,579 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 15:15:27] 2025-10-13 13:14:56,592 | INFO     | sufficient remaining disk space (256975568896 B)
[2025-10-13 15:15:27] 2025-10-13 13:14:56,592 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 15:15:27] 2025-10-13 13:14:56,592 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 15:15:27] 2025-10-13 13:14:56,592 | INFO     | update_server=False
[2025-10-13 15:15:27] 2025-10-13 13:14:56,592 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 15:15:27] 2025-10-13 13:14:56,592 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 15:15:27] 2025-10-13 13:14:56,592 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 15:15:27] 2025-10-13 13:14:56,702 | INFO     | all job control threads have been joined
[2025-10-13 15:15:27] 2025-10-13 13:14:56,893 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 15:15:27] 2025-10-13 13:14:56,893 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 15:15:27] 2025-10-13 13:14:56,894 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 15:15:27] 2025-10-13 13:14:56,894 | INFO     | will abort loop
[2025-10-13 15:15:27] 2025-10-13 13:14:57,490 | INFO     | all data control threads have been joined
[2025-10-13 15:15:27] 2025-10-13 13:14:57,597 | INFO     | [job] retrieve thread has finished
[2025-10-13 15:15:27] 2025-10-13 13:14:57,598 | INFO     | [job] queue monitor thread has finished
[2025-10-13 15:15:27] 2025-10-13 13:14:57,638 | INFO     | [job] validate thread has finished
[2025-10-13 15:15:27] 2025-10-13 13:14:57,645 | INFO     | [payload] failed_post thread has finished
[2025-10-13 15:15:27] 2025-10-13 13:14:57,688 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 15:15:27] 2025-10-13 13:14:57,708 | INFO     | [job] control thread has finished
[2025-10-13 15:15:27] 2025-10-13 13:14:57,873 | INFO     | all payload control threads have been joined
[2025-10-13 15:15:27] 2025-10-13 13:14:57,899 | INFO     | [job] job monitor thread has finished
[2025-10-13 15:15:27] 2025-10-13 13:14:58,219 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 15:15:27] 2025-10-13 13:14:58,344 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 15:15:27] 2025-10-13 13:14:58,497 | INFO     | [data] control thread has finished
[2025-10-13 15:15:27] 2025-10-13 13:14:58,598 | INFO     | [data] copytool_out thread has finished
[2025-10-13 15:15:27] 2025-10-13 13:14:58,847 | INFO     | [data] copytool_in thread has finished
[2025-10-13 15:15:27] 2025-10-13 13:14:58,878 | INFO     | [payload] control thread has finished
[2025-10-13 15:15:27] 2025-10-13 13:14:59,030 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 15:15:27] 2025-10-13 13:14:59,168 | INFO     | [payload] validate_post thread has finished
[2025-10-13 15:15:27] 2025-10-13 13:15:02,227 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 15:15:27] 2025-10-13 13:15:07,584 | INFO     | job.realtimelogging is not enabled
[2025-10-13 15:15:27] 2025-10-13 13:15:08,591 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 15:15:27] 2025-10-13 13:15:13,020 | INFO     | [monitor] cgroup control has ended
[2025-10-13 15:15:27] 2025-10-13 13:15:13,161 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140083710621504)>', '<ExcThread(monitor, started 140082774275840)>']
[2025-10-13 15:15:27] 2025-10-13 13:15:18,187 | INFO     | all workflow threads have been joined
[2025-10-13 15:15:27] 2025-10-13 13:15:18,187 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 15:15:27] 2025-10-13 13:15:18,188 | INFO     | traces error code: 0
[2025-10-13 15:15:27] 2025-10-13 13:15:18,188 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 15:15:27] 2025-10-13 13:15:27,056 | INFO     | PID=2655483 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 15:15:27] 2025-10-13 13:15:27,056 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 15:15:27] 2025-10-13 13:15:27,056 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 15:15:27] 2025-10-13 13:15:27,056 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 15:15:27] 2025-10-13 13:15:27,057 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 15:15:27] 2025-10-13 13:15:27,057 | INFO     | [monitor] control thread has ended
[2025-10-13 15:15:27] 2025-10-13 13:15:27,095 [wrapper] ==== pilot stdout END ====
[2025-10-13 15:15:27] 2025-10-13 13:15:27,098 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 15:15:27] 2025-10-13 13:15:27,100 [wrapper] pilotpid: 2655483
[2025-10-13 15:15:27] 2025-10-13 13:15:27,103 [wrapper] Pilot exit status: 0
[2025-10-13 15:15:27] 2025-10-13 13:15:27,109 [wrapper] pandaids: 6840750734
[2025-10-13 15:15:27] 2025-10-13 13:15:27,121 [wrapper] cleanup supervisor_pilot 2677955 2655484
[2025-10-13 15:15:27] 2025-10-13 13:15:27,123 [wrapper] Test setup, not cleaning
[2025-10-13 15:15:27] 2025-10-13 13:15:27,125 [wrapper] apfmon messages muted
[2025-10-13 15:15:27] 2025-10-13 13:15:27,127 [wrapper] ==== wrapper stdout END ====
[2025-10-13 15:15:27] 2025-10-13 13:15:27,129 [wrapper] ==== wrapper stderr END ====
[2025-10-13 15:15:27]  *** Error codes and diagnostics ***
[2025-10-13 15:15:27]     "exeErrorCode": 0,
[2025-10-13 15:15:27]     "exeErrorDiag": "",
[2025-10-13 15:15:27]     "pilotErrorCode": 0,
[2025-10-13 15:15:27]     "pilotErrorDiag": "",
[2025-10-13 15:15:27]  *** Listing of results directory ***
[2025-10-13 15:15:27] total 408272
[2025-10-13 15:15:27] -rw-r--r-- 1 boinc boinc    557409 Oct 12 23:12 pilot3.tar.gz
[2025-10-13 15:15:27] -rw-r--r-- 1 boinc boinc      5112 Oct 12 23:23 queuedata.json
[2025-10-13 15:15:27] -rwx------ 1 boinc boinc     36292 Oct 12 23:25 runpilot2-wrapper.sh
[2025-10-13 15:15:27] -rw-r--r-- 1 boinc boinc       100 Oct 13 13:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 15:15:27] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 13:08 run_atlas
[2025-10-13 15:15:27] -rw-r--r-- 1 boinc boinc       105 Oct 13 13:08 job.xml
[2025-10-13 15:15:27] -rw-r--r-- 2 boinc boinc 220109318 Oct 13 13:08 EVNT.46676267._004831.pool.root.1
[2025-10-13 15:15:27] -rw-r--r-- 2 boinc boinc    569680 Oct 13 13:08 input.tar.gz
[2025-10-13 15:15:27] -rw-r--r-- 2 boinc boinc     15120 Oct 13 13:08 start_atlas.sh
[2025-10-13 15:15:27] drwxrwx--x 2 boinc boinc      4096 Oct 13 13:08 shared
[2025-10-13 15:15:27] -rw-r--r-- 1 boinc boinc         0 Oct 13 13:08 boinc_setup_complete
[2025-10-13 15:15:27] -rw-r--r-- 1 boinc boinc      6209 Oct 13 13:08 init_data.xml
[2025-10-13 15:15:27] -rw-r--r-- 1 boinc boinc         0 Oct 13 13:08 boinc_lockfile
[2025-10-13 15:15:27] -rw-r--r-- 1 boinc boinc      2550 Oct 13 13:08 pandaJob.out
[2025-10-13 15:15:27] -rw------- 1 boinc boinc    972497 Oct 13 13:09 agis_schedconf.cvmfs.json
[2025-10-13 15:15:27] -rw------- 1 boinc boinc   1560580 Oct 13 13:09 agis_ddmendpoints.agis.ALL.json
[2025-10-13 15:15:27] drwx------ 5 boinc boinc      4096 Oct 13 13:09 pilot3
[2025-10-13 15:15:27] -rw------- 1 boinc boinc 191355976 Oct 13 15:14 HITS.46676269._089953.pool.root.1
[2025-10-13 15:15:27] -rw------- 1 boinc boinc        95 Oct 13 15:14 pilot_heartbeat.json
[2025-10-13 15:15:27] -rw-r--r-- 1 boinc boinc       529 Oct 13 15:14 boinc_task_state.xml
[2025-10-13 15:15:27] -rw------- 1 boinc boinc      1026 Oct 13 15:14 memory_monitor_summary.json
[2025-10-13 15:15:27] -rw------- 1 boinc boinc    269879 Oct 13 15:14 log.46676269._089953.job.log.tgz.1
[2025-10-13 15:15:27] -rw------- 1 boinc boinc      7758 Oct 13 15:14 heartbeat.json
[2025-10-13 15:15:27] -rw-r--r-- 1 boinc boinc        27 Oct 13 15:15 wrapper_checkpoint.txt
[2025-10-13 15:15:27] -rw-r--r-- 1 boinc boinc      8192 Oct 13 15:15 boinc_mmap_file
[2025-10-13 15:15:27] -rw------- 1 boinc boinc       747 Oct 13 15:15 pilotlog.txt
[2025-10-13 15:15:27] -rw------- 1 boinc boinc   1088342 Oct 13 15:15 log.46676269._089953.job.log.1
[2025-10-13 15:15:27] -rw------- 1 boinc boinc       357 Oct 13 15:15 output.list
[2025-10-13 15:15:27] -rw-r--r-- 1 boinc boinc       620 Oct 13 15:15 runtime_log
[2025-10-13 15:15:27] -rw------- 1 boinc boinc   1382400 Oct 13 15:15 result.tar.gz
[2025-10-13 15:15:27] -rw-r--r-- 1 boinc boinc      8797 Oct 13 15:15 runtime_log.err
[2025-10-13 15:15:27] -rw------- 1 boinc boinc       663 Oct 13 15:15 ljjLDmekIS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmMflNDmhuduWn.diag
[2025-10-13 15:15:27] -rw-r--r-- 1 boinc boinc     12261 Oct 13 15:15 stderr.txt
[2025-10-13 15:15:27] HITS file was successfully produced:
[2025-10-13 15:15:27] -rw------- 1 boinc boinc 191355976 Oct 13 15:14 shared/HITS.pool.root.1
[2025-10-13 15:15:27]  *** Contents of shared directory: ***
[2025-10-13 15:15:27] total 403760
[2025-10-13 15:15:27] -rw-r--r-- 2 boinc boinc 220109318 Oct 13 13:08 ATLAS.root_0
[2025-10-13 15:15:27] -rw-r--r-- 2 boinc boinc    569680 Oct 13 13:08 input.tar.gz
[2025-10-13 15:15:27] -rw-r--r-- 2 boinc boinc     15120 Oct 13 13:08 start_atlas.sh
[2025-10-13 15:15:27] -rw------- 1 boinc boinc 191355976 Oct 13 15:14 HITS.pool.root.1
[2025-10-13 15:15:27] -rw------- 1 boinc boinc   1382400 Oct 13 15:15 result.tar.gz
15:15:28 (2651775): run_atlas exited; CPU time 14645.931771
15:15:28 (2651775): called boinc_finish(0)

</stderr_txt>
]]>

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