Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
21:32:20 (15051): wrapper (7.7.26015): starting
21:32:20 (15051): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 21:32:20] Arguments: --nthreads 12
[2025-10-12 21:32:20] Threads: 12
[2025-10-12 21:32:20] Checking for CVMFS
[2025-10-12 21:32:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 21:32:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 21:32:21] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 21:32:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 21:32:21] 2.11.2.0 2933 223666 98452 151643 3 57 15886036 20275201 1 130560 2 108137497 99.983 13112184 12478 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 21:32:21] CVMFS is ok
[2025-10-12 21:32:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 21:32:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 21:32:21] Further information can be found at the LHC@home message board.
[2025-10-12 21:32:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 21:32:21] Checking for apptainer binary...
[2025-10-12 21:32:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 21:32:21] Running /usr/bin/apptainer --version
[2025-10-12 21:32:21] apptainer version 1.3.2-1.el7
[2025-10-12 21:32:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 21:32:22] c-205-15.aglt2.org
[2025-10-12 21:32:22] apptainer works
[2025-10-12 21:32:22] Set ATHENA_PROC_NUMBER=12
[2025-10-12 21:32:22] Set ATHENA_CORE_NUMBER=12
[2025-10-12 21:32:22] Starting ATLAS job with PandaID=6840750850
[2025-10-12 21:32:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 22:51:49]  *** The last 200 lines of the pilot log: ***
[2025-10-12 22:51:49]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6840750850/log.46676269._090069.job.log.tgz.1
[2025-10-12 22:51:49]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/43/67/log.46676269._090069.job.log.tgz.1
[2025-10-12 22:51:49]  workdir=None
[2025-10-12 22:51:49] ]
[2025-10-12 22:51:49] 2025-10-13 02:50:59,989 | INFO     | transferring file log.46676269._090069.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6840750850/log.46676269._090069.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 22:51:49] 2025-10-13 02:50:59,989 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6840750850/log.46676269._090069.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._090069.job
[2025-10-12 22:51:49] 2025-10-13 02:51:00,011 | INFO     | adding to output.list: log.46676269._090069.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/43/67/log.46676269._090069.job.log.tg
[2025-10-12 22:51:49] 2025-10-13 02:51:00,012 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 22:51:49] 2025-10-13 02:51:00,013 | INFO     | summary of transferred files:
[2025-10-12 22:51:49] 2025-10-13 02:51:00,013 | INFO     |  -- lfn=log.46676269._090069.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 22:51:49] 2025-10-13 02:51:00,013 | INFO     | stage-out finished correctly
[2025-10-12 22:51:49] 2025-10-13 02:51:01,283 | INFO     | monitor loop #351: job 0:6840750850 is in state 'finished'
[2025-10-12 22:51:49] 2025-10-13 02:51:01,284 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 22:51:49] 2025-10-13 02:51:01,898 | INFO     | time since job start (4704s) is within the limit (172800.0s)
[2025-10-12 22:51:49] 2025-10-13 02:51:03,016 | INFO     | PID=18730 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 22:51:49] 2025-10-13 02:51:03,379 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 22:51:49] 2025-10-13 02:51:03,787 | INFO     | monitor loop #352: job 0:6840750850 is in state 'finished'
[2025-10-12 22:51:49] 2025-10-13 02:51:03,787 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 22:51:49] 2025-10-13 02:51:04,016 | INFO     | time since job start (4707s) is within the limit (172800.0s)
[2025-10-12 22:51:49] 2025-10-13 02:51:04,399 | INFO     | job 6840750850 has state=finished
[2025-10-12 22:51:49] 2025-10-13 02:51:04,399 | INFO     | preparing for final server update for job 6840750850 in state='finished'
[2025-10-12 22:51:49] 2025-10-13 02:51:04,399 | INFO     | this job has now completed (state=finished)
[2025-10-12 22:51:49] 2025-10-13 02:51:04,400 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 22:51:49] 2025-10-13 02:51:04,400 | INFO     | log transfer has been attempted: DONE
[2025-10-12 22:51:49] 2025-10-13 02:51:04,400 | INFO     | job 6840750850 has finished - writing final server update
[2025-10-12 22:51:49] 2025-10-13 02:51:04,400 | INFO     | total number of processed events: 400 (read)
[2025-10-12 22:51:49] 2025-10-13 02:51:04,401 | INFO     | executing command: lscpu
[2025-10-12 22:51:49] 2025-10-13 02:51:04,433 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 22:51:49] 2025-10-13 02:51:06,021 | INFO     | time since job start (4709s) is within the limit (172800.0s)
[2025-10-12 22:51:49] 2025-10-13 02:51:06,290 | INFO     | monitor loop #353: job 0:6840750850 is in state 'finished'
[2025-10-12 22:51:49] 2025-10-13 02:51:06,290 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 22:51:49] 2025-10-13 02:51:08,027 | INFO     | time since job start (4711s) is within the limit (172800.0s)
[2025-10-12 22:51:49] 2025-10-13 02:51:08,793 | INFO     | monitor loop #354: job 0:6840750850 is in state 'finished'
[2025-10-12 22:51:49] 2025-10-13 02:51:08,793 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 22:51:49] 2025-10-13 02:51:09,168 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 22:51:49] 2025-10-13 02:51:09,171 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1718.0
[2025-10-12 22:51:49] 2025-10-13 02:51:09,174 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840750850/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 22:51:49] 2025-10-13 02:51:09,175 | INFO     | extracted standard info from prmon json
[2025-10-12 22:51:49] 2025-10-13 02:51:09,175 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 22:51:49] 2025-10-13 02:51:09,175 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 22:51:49] 2025-10-13 02:51:09,175 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 22:51:49] 2025-10-13 02:51:09,176 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 22:51:49] 2025-10-13 02:51:09,177 | INFO     | fitting pss+swap vs Time
[2025-10-12 22:51:49] 2025-10-13 02:51:09,177 | INFO     | sum of square deviations: 106336877.5
[2025-10-12 22:51:49] 2025-10-13 02:51:09,178 | INFO     | sum of deviations: -7646918825.000001
[2025-10-12 22:51:49] 2025-10-13 02:51:09,178 | INFO     | mean x: 1760321595.5
[2025-10-12 22:51:49] 2025-10-13 02:51:09,178 | INFO     | mean y: 2780025.0857142857
[2025-10-12 22:51:49] 2025-10-13 02:51:09,178 | INFO     | -- intersect: 126591379043.17316
[2025-10-12 22:51:49] 2025-10-13 02:51:09,178 | INFO     | intersect: 126591379043.17316
[2025-10-12 22:51:49] 2025-10-13 02:51:09,178 | INFO     | chi2: 0.08816009149591122
[2025-10-12 22:51:49] 2025-10-13 02:51:09,178 | INFO     | -- intersect: 126591379043.17316
[2025-10-12 22:51:49] 2025-10-13 02:51:09,179 | INFO     | current memory leak: -71.91 B/s (using 70 data points, chi2=0.09)
[2025-10-12 22:51:49] 2025-10-13 02:51:09,179 | INFO     | could have reported an average CPU frequency of 2045 MHz (6 samples)
[2025-10-12 22:51:49] 2025-10-13 02:51:09,179 | INFO     | ..............................
[2025-10-12 22:51:49] 2025-10-13 02:51:09,179 | INFO     | . Timing measurements:
[2025-10-12 22:51:49] 2025-10-13 02:51:09,179 | INFO     | . get job = 0 s
[2025-10-12 22:51:49] 2025-10-13 02:51:09,179 | INFO     | . initial setup = 2 s
[2025-10-12 22:51:49] 2025-10-13 02:51:09,179 | INFO     | . payload setup = 7 s
[2025-10-12 22:51:49] 2025-10-13 02:51:09,179 | INFO     | . stage-in = 0 s
[2025-10-12 22:51:49] 2025-10-13 02:51:09,180 | INFO     | . payload execution = 4675 s
[2025-10-12 22:51:49] 2025-10-13 02:51:09,180 | INFO     | . stage-out = 0 s
[2025-10-12 22:51:49] 2025-10-13 02:51:09,180 | INFO     | . log creation = 0 s
[2025-10-12 22:51:49] 2025-10-13 02:51:09,180 | INFO     | ..............................
[2025-10-12 22:51:49] 2025-10-13 02:51:09,263 | INFO     | 
[2025-10-12 22:51:49] 2025-10-13 02:51:09,264 | INFO     | job summary report
[2025-10-12 22:51:49] 2025-10-13 02:51:09,264 | INFO     | --------------------------------------------------
[2025-10-12 22:51:49] 2025-10-13 02:51:09,264 | INFO     | PanDA job id: 6840750850
[2025-10-12 22:51:49] 2025-10-13 02:51:09,264 | INFO     | task id: 46676269
[2025-10-12 22:51:49] 2025-10-13 02:51:09,264 | INFO     | errors: (none)
[2025-10-12 22:51:49] 2025-10-13 02:51:09,265 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 22:51:49] 2025-10-13 02:51:09,265 | INFO     | pilot state: finished 
[2025-10-12 22:51:49] 2025-10-13 02:51:09,265 | INFO     | transexitcode: 0
[2025-10-12 22:51:49] 2025-10-13 02:51:09,265 | INFO     | exeerrorcode: 0
[2025-10-12 22:51:49] 2025-10-13 02:51:09,265 | INFO     | exeerrordiag: 
[2025-10-12 22:51:49] 2025-10-13 02:51:09,265 | INFO     | exitcode: 0
[2025-10-12 22:51:49] 2025-10-13 02:51:09,265 | INFO     | exitmsg: OK
[2025-10-12 22:51:49] 2025-10-13 02:51:09,266 | INFO     | cpuconsumptiontime: 48114 s
[2025-10-12 22:51:49] 2025-10-13 02:51:09,266 | INFO     | nevents: 400
[2025-10-12 22:51:49] 2025-10-13 02:51:09,266 | INFO     | neventsw: 0
[2025-10-12 22:51:49] 2025-10-13 02:51:09,266 | INFO     | pid: 25503
[2025-10-12 22:51:49] 2025-10-13 02:51:09,266 | INFO     | pgrp: 25503
[2025-10-12 22:51:49] 2025-10-13 02:51:09,266 | INFO     | corecount: 12
[2025-10-12 22:51:49] 2025-10-13 02:51:09,267 | INFO     | event service: False
[2025-10-12 22:51:49] 2025-10-13 02:51:09,267 | INFO     | sizes: {0: 2348857, 5: 2349119, 11: 2349175, 4685: 2375336, 4686: 2384334, 4690: 2384390, 4695: 2384712}
[2025-10-12 22:51:49] 2025-10-13 02:51:09,267 | INFO     | --------------------------------------------------
[2025-10-12 22:51:49] 2025-10-13 02:51:09,267 | INFO     | 
[2025-10-12 22:51:49] 2025-10-13 02:51:09,267 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 22:51:49] 2025-10-13 02:51:09,292 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 22:51:49] 2025-10-13 02:51:09,292 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 22:51:49] 2025-10-13 02:51:09,293 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 22:51:49] 2025-10-13 02:51:09,293 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 22:51:49] 2025-10-13 02:51:09,293 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 22:51:49] 2025-10-13 02:51:09,293 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 22:51:49] 2025-10-13 02:51:09,293 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 22:51:49] 2025-10-13 02:51:09,294 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 22:51:49] 2025-10-13 02:51:09,294 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 22:51:49] 2025-10-13 02:51:09,294 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 22:51:49] 2025-10-13 02:51:09,294 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 22:51:49] 2025-10-13 02:51:09,294 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 22:51:49] 2025-10-13 02:51:09,294 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 22:51:49] 2025-10-13 02:51:09,295 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 22:51:49] 2025-10-13 02:51:09,295 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 22:51:49] 2025-10-13 02:51:09,295 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 22:51:49] 2025-10-13 02:51:09,295 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 22:51:49] 2025-10-13 02:51:09,295 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 22:51:49] 2025-10-13 02:51:09,295 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 22:51:49] 2025-10-13 02:51:09,295 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 22:51:49] 2025-10-13 02:51:09,296 | INFO     | job 6840750850 has completed (purged errors)
[2025-10-12 22:51:49] 2025-10-13 02:51:09,296 | INFO     | overall cleanup function is called
[2025-10-12 22:51:49] 2025-10-13 02:51:10,304 | INFO     | --- collectZombieJob: --- 10, [25503]
[2025-10-12 22:51:49] 2025-10-13 02:51:10,304 | INFO     | zombie collector waiting for pid 25503
[2025-10-12 22:51:49] 2025-10-13 02:51:10,304 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 22:51:49] 2025-10-13 02:51:10,304 | INFO     | collected zombie processes
[2025-10-12 22:51:49] 2025-10-13 02:51:10,305 | INFO     | will attempt to kill all subprocesses of pid=25503
[2025-10-12 22:51:49] 2025-10-13 02:51:10,396 | INFO     | process IDs to be killed: [25503] (in reverse order)
[2025-10-12 22:51:49] 2025-10-13 02:51:10,450 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 22:51:49] 2025-10-13 02:51:10,450 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 22:51:49] 2025-10-13 02:51:10,454 | INFO     | did not find any defunct processes belonging to 25503
[2025-10-12 22:51:49] 2025-10-13 02:51:10,456 | INFO     | did not find any defunct processes belonging to 25503
[2025-10-12 22:51:49] 2025-10-13 02:51:10,457 | INFO     | ready for new job
[2025-10-12 22:51:49] 2025-10-13 02:51:10,457 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 22:51:49] 2025-10-13 02:51:10,458 | INFO     | ***************************************
[2025-10-12 22:51:49] 2025-10-13 02:51:10,458 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 22:51:49] 2025-10-13 02:51:10,458 | INFO     | ***************************************
[2025-10-12 22:51:49] 2025-10-13 02:51:10,458 | INFO     | 
[2025-10-12 22:51:49] 2025-10-13 02:51:10,459 | INFO     | architecture information:
[2025-10-12 22:51:49] 2025-10-13 02:51:10,459 | INFO     | executing command: cat /etc/os-release
[2025-10-12 22:51:49] 2025-10-13 02:51:10,475 | INFO     | cat /etc/os-release:
[2025-10-12 22:51:49] NAME="CentOS Linux"
[2025-10-12 22:51:49] VERSION="7 (Core)"
[2025-10-12 22:51:49] ID="centos"
[2025-10-12 22:51:49] ID_LIKE="rhel fedora"
[2025-10-12 22:51:49] VERSION_ID="7"
[2025-10-12 22:51:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 22:51:49] ANSI_COLOR="0;31"
[2025-10-12 22:51:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 22:51:49] HOME_URL="https://www.centos.org/"
[2025-10-12 22:51:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 22:51:49] 
[2025-10-12 22:51:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 22:51:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 22:51:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 22:51:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 22:51:49] 
[2025-10-12 22:51:49] 2025-10-13 02:51:10,475 | INFO     | ***************************************
[2025-10-12 22:51:49] 2025-10-13 02:51:10,978 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 22:51:49] 2025-10-13 02:51:10,994 | INFO     | sufficient remaining disk space (29361176576 B)
[2025-10-12 22:51:49] 2025-10-13 02:51:10,995 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 22:51:49] 2025-10-13 02:51:10,995 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 22:51:49] 2025-10-13 02:51:10,995 | INFO     | update_server=False
[2025-10-12 22:51:49] 2025-10-13 02:51:10,995 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 22:51:49] 2025-10-13 02:51:10,996 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 22:51:49] 2025-10-13 02:51:10,996 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:51:49] 2025-10-13 02:51:11,296 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 22:51:49] 2025-10-13 02:51:11,296 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 22:51:49] 2025-10-13 02:51:11,296 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:51:49] 2025-10-13 02:51:11,297 | INFO     | will abort loop
[2025-10-12 22:51:49] 2025-10-13 02:51:11,850 | INFO     | all payload control threads have been joined
[2025-10-12 22:51:49] 2025-10-13 02:51:11,881 | INFO     | all data control threads have been joined
[2025-10-12 22:51:49] 2025-10-13 02:51:12,001 | INFO     | [job] retrieve thread has finished
[2025-10-12 22:51:49] 2025-10-13 02:51:12,002 | INFO     | [job] queue monitor thread has finished
[2025-10-12 22:51:49] 2025-10-13 02:51:12,037 | INFO     | [payload] failed_post thread has finished
[2025-10-12 22:51:49] 2025-10-13 02:51:12,187 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 22:51:49] 2025-10-13 02:51:12,302 | INFO     | [job] job monitor thread has finished
[2025-10-12 22:51:49] 2025-10-13 02:51:12,361 | INFO     | [data] copytool_in thread has finished
[2025-10-12 22:51:49] 2025-10-13 02:51:12,533 | INFO     | all job control threads have been joined
[2025-10-12 22:51:49] 2025-10-13 02:51:12,649 | INFO     | [job] validate thread has finished
[2025-10-12 22:51:49] 2025-10-13 02:51:12,786 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 22:51:49] 2025-10-13 02:51:12,796 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 22:51:49] 2025-10-13 02:51:12,855 | INFO     | [payload] control thread has finished
[2025-10-12 22:51:49] 2025-10-13 02:51:12,887 | INFO     | [data] control thread has finished
[2025-10-12 22:51:49] 2025-10-13 02:51:13,001 | INFO     | [data] copytool_out thread has finished
[2025-10-12 22:51:49] 2025-10-13 02:51:13,063 | INFO     | [payload] validate_post thread has finished
[2025-10-12 22:51:49] 2025-10-13 02:51:13,538 | INFO     | [job] control thread has finished
[2025-10-12 22:51:49] 2025-10-13 02:51:13,971 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 22:51:49] 2025-10-13 02:51:17,977 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 22:51:49] 2025-10-13 02:51:21,969 | INFO     | job.realtimelogging is not enabled
[2025-10-12 22:51:49] 2025-10-13 02:51:22,975 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 22:51:49] 2025-10-13 02:51:41,233 | INFO     | PID=18730 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 22:51:49] 2025-10-13 02:51:41,234 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 22:51:49] 2025-10-13 02:51:41,234 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 22:51:49] 2025-10-13 02:51:41,234 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 22:51:49] 2025-10-13 02:51:44,362 | INFO     | [monitor] cgroup control has ended
[2025-10-12 22:51:49] 2025-10-13 02:51:44,587 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140168792250176)>', '<ExcThread(monitor, started 140167398553344)>']
[2025-10-12 22:51:49] 2025-10-13 02:51:45,250 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 22:51:49] 2025-10-13 02:51:45,250 | INFO     | [monitor] control thread has ended
[2025-10-12 22:51:49] 2025-10-13 02:51:49,613 | INFO     | all workflow threads have been joined
[2025-10-12 22:51:49] 2025-10-13 02:51:49,613 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 22:51:49] 2025-10-13 02:51:49,613 | INFO     | traces error code: 0
[2025-10-12 22:51:49] 2025-10-13 02:51:49,614 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 22:51:49] 2025-10-13 02:51:49,706 [wrapper] ==== pilot stdout END ====
[2025-10-12 22:51:49] 2025-10-13 02:51:49,710 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 22:51:49] 2025-10-13 02:51:49,714 [wrapper] pilotpid: 18730
[2025-10-12 22:51:49] 2025-10-13 02:51:49,718 [wrapper] Pilot exit status: 0
[2025-10-12 22:51:49] 2025-10-13 02:51:49,736 [wrapper] pandaids: 6840750850
[2025-10-12 22:51:49] 2025-10-13 02:51:49,776 [wrapper] cleanup supervisor_pilot 11796 18731
[2025-10-12 22:51:49] 2025-10-13 02:51:49,780 [wrapper] Test setup, not cleaning
[2025-10-12 22:51:49] 2025-10-13 02:51:49,785 [wrapper] apfmon messages muted
[2025-10-12 22:51:49] 2025-10-13 02:51:49,789 [wrapper] ==== wrapper stdout END ====
[2025-10-12 22:51:49] 2025-10-13 02:51:49,793 [wrapper] ==== wrapper stderr END ====
[2025-10-12 22:51:49]  *** Error codes and diagnostics ***
[2025-10-12 22:51:49]     "exeErrorCode": 0,
[2025-10-12 22:51:49]     "exeErrorDiag": "",
[2025-10-12 22:51:49]     "pilotErrorCode": 0,
[2025-10-12 22:51:49]     "pilotErrorDiag": "",
[2025-10-12 22:51:49]  *** Listing of results directory ***
[2025-10-12 22:51:49] total 415120
[2025-10-12 22:51:49] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 17:31 queuedata.json
[2025-10-12 22:51:49] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 17:31 pilot3.tar.gz
[2025-10-12 22:51:49] -rwx------ 1 boincer umatlas     36292 Oct 12 17:32 runpilot2-wrapper.sh
[2025-10-12 22:51:49] -rw-r--r-- 1 boincer umatlas       100 Oct 12 21:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 22:51:49] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 21:32 run_atlas
[2025-10-12 22:51:49] -rw-r--r-- 1 boincer umatlas       105 Oct 12 21:32 job.xml
[2025-10-12 22:51:49] -rw-r--r-- 2 boincer umatlas 220744342 Oct 12 21:32 EVNT.46676267._004835.pool.root.1
[2025-10-12 22:51:49] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 21:32 start_atlas.sh
[2025-10-12 22:51:49] drwxrwx--x 2 boincer umatlas      4096 Oct 12 21:32 shared
[2025-10-12 22:51:49] -rw-r--r-- 2 boincer umatlas    569682 Oct 12 21:32 input.tar.gz
[2025-10-12 22:51:49] -rw-r--r-- 1 boincer umatlas         0 Oct 12 21:32 boinc_lockfile
[2025-10-12 22:51:49] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 21:32 pandaJob.out
[2025-10-12 22:51:49] -rw------- 1 boincer umatlas    975595 Oct 12 21:32 agis_schedconf.cvmfs.json
[2025-10-12 22:51:49] -rw------- 1 boincer umatlas   1560580 Oct 12 21:32 agis_ddmendpoints.agis.ALL.json
[2025-10-12 22:51:49] drwx------ 5 boincer umatlas      4096 Oct 12 21:32 pilot3
[2025-10-12 22:51:49] -rw-r--r-- 1 boincer umatlas      5953 Oct 12 22:49 init_data.xml
[2025-10-12 22:51:49] -rw------- 1 boincer umatlas 198263326 Oct 12 22:50 HITS.46676269._090069.pool.root.1
[2025-10-12 22:51:49] -rw------- 1 boincer umatlas      1063 Oct 12 22:50 memory_monitor_summary.json
[2025-10-12 22:51:49] -rw-r--r-- 1 boincer umatlas       529 Oct 12 22:50 boinc_task_state.xml
[2025-10-12 22:51:49] -rw------- 1 boincer umatlas    400349 Oct 12 22:50 log.46676269._090069.job.log.tgz.1
[2025-10-12 22:51:49] -rw------- 1 boincer umatlas      7855 Oct 12 22:51 heartbeat.json
[2025-10-12 22:51:49] -rw-r--r-- 1 boincer umatlas        27 Oct 12 22:51 wrapper_checkpoint.txt
[2025-10-12 22:51:49] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 22:51 boinc_mmap_file
[2025-10-12 22:51:49] -rw------- 1 boincer umatlas        95 Oct 12 22:51 pilot_heartbeat.json
[2025-10-12 22:51:49] -rw------- 1 boincer umatlas      5004 Oct 12 22:51 pilotlog.txt
[2025-10-12 22:51:49] -rw------- 1 boincer umatlas    681734 Oct 12 22:51 log.46676269._090069.job.log.1
[2025-10-12 22:51:49] -rw------- 1 boincer umatlas       357 Oct 12 22:51 output.list
[2025-10-12 22:51:49] -rw-r--r-- 1 boincer umatlas       620 Oct 12 22:51 runtime_log
[2025-10-12 22:51:49] -rw------- 1 boincer umatlas   1105920 Oct 12 22:51 result.tar.gz
[2025-10-12 22:51:49] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 22:51 runtime_log.err
[2025-10-12 22:51:49] -rw------- 1 boincer umatlas       659 Oct 12 22:51 14NKDmbrIS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmJhlNDmiKLbNn.diag
[2025-10-12 22:51:49] -rw-r--r-- 1 boincer umatlas     22332 Oct 12 22:51 stderr.txt
[2025-10-12 22:51:49] HITS file was successfully produced:
[2025-10-12 22:51:49] -rw------- 1 boincer umatlas 198263326 Oct 12 22:50 shared/HITS.pool.root.1
[2025-10-12 22:51:49]  *** Contents of shared directory: ***
[2025-10-12 22:51:49] total 410856
[2025-10-12 22:51:49] -rw-r--r-- 2 boincer umatlas 220744342 Oct 12 21:32 ATLAS.root_0
[2025-10-12 22:51:49] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 21:32 start_atlas.sh
[2025-10-12 22:51:49] -rw-r--r-- 2 boincer umatlas    569682 Oct 12 21:32 input.tar.gz
[2025-10-12 22:51:49] -rw------- 1 boincer umatlas 198263326 Oct 12 22:50 HITS.pool.root.1
[2025-10-12 22:51:49] -rw------- 1 boincer umatlas   1105920 Oct 12 22:51 result.tar.gz
22:51:51 (15051): run_atlas exited; CPU time 48081.200624
22:51:51 (15051): called boinc_finish(0)

</stderr_txt>
]]>

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