Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:54:47 (1027): wrapper (7.7.26015): starting
11:54:47 (1027): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 11:54:47] Arguments: --nthreads 8
[2025-10-13 11:54:47] Threads: 8
[2025-10-13 11:54:47] Checking for CVMFS
[2025-10-13 11:54:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 11:54:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 11:54:48] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 11:54:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 11:54:49] 2.11.2.0 17493 24213 77376 151656 3 61 21084006 25165824 4632 130560 0 7456151 99.917 2942442 1461 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-13 11:54:49] CVMFS is ok
[2025-10-13 11:54:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 11:54:49] Checking for apptainer binary...
[2025-10-13 11:54:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 11:54:49] Running /usr/bin/apptainer --version
[2025-10-13 11:54:49] apptainer version 1.3.2-1.el7
[2025-10-13 11:54:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 11:54:57] cg-vwn341.simple-grid.lan
[2025-10-13 11:54:57] apptainer works
[2025-10-13 11:54:57] Set ATHENA_PROC_NUMBER=8
[2025-10-13 11:54:57] Set ATHENA_CORE_NUMBER=8
[2025-10-13 11:54:57] Starting ATLAS job with PandaID=6840750355
[2025-10-13 11:54:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 16:07:12]  *** The last 200 lines of the pilot log: ***
[2025-10-13 16:07:12] 2025-10-13 14:06:08,748 | INFO     | fitting pss+swap vs Time
[2025-10-13 16:07:12] 2025-10-13 14:06:08,748 | INFO     | sum of square deviations: 4075741535.0
[2025-10-13 16:07:12] 2025-10-13 14:06:08,750 | INFO     | sum of deviations: 37220886212.499985
[2025-10-13 16:07:12] 2025-10-13 14:06:08,750 | INFO     | mean x: 1760357065.5
[2025-10-13 16:07:12] 2025-10-13 14:06:08,751 | INFO     | mean y: 2458724.61440678
[2025-10-13 16:07:12] 2025-10-13 14:06:08,751 | INFO     | -- intersect: -16073646559.708015
[2025-10-13 16:07:12] 2025-10-13 14:06:08,751 | INFO     | intersect: -16073646559.708015
[2025-10-13 16:07:12] 2025-10-13 14:06:08,751 | INFO     | chi2: 2.314124050475292
[2025-10-13 16:07:12] 2025-10-13 14:06:08,752 | INFO     | sum of square deviations: 3822136780.0
[2025-10-13 16:07:12] 2025-10-13 14:06:08,758 | INFO     | sum of deviations: 51813146850.0
[2025-10-13 16:07:12] 2025-10-13 14:06:08,758 | INFO     | mean x: 1760356913.0
[2025-10-13 16:07:12] 2025-10-13 14:06:08,758 | INFO     | mean y: 2467338.662337662
[2025-10-13 16:07:12] 2025-10-13 14:06:08,758 | INFO     | -- intersect: -23861051025.973915
[2025-10-13 16:07:12] 2025-10-13 14:06:08,758 | INFO     | intersect: -23861051025.973915
[2025-10-13 16:07:12] 2025-10-13 14:06:08,759 | INFO     | chi2: 1.5406513070663979
[2025-10-13 16:07:12] 2025-10-13 14:06:08,759 | INFO     | current chi2=1.5406513070663979 (change=33.423996576589424 %)
[2025-10-13 16:07:12] 2025-10-13 14:06:08,759 | INFO     | sum of square deviations: 3579276412.5
[2025-10-13 16:07:12] 2025-10-13 14:06:08,761 | INFO     | sum of deviations: 50577541891.00001
[2025-10-13 16:07:12] 2025-10-13 14:06:08,761 | INFO     | mean x: 1760356760.5
[2025-10-13 16:07:12] 2025-10-13 14:06:08,768 | INFO     | mean y: 2466562.6725663715
[2025-10-13 16:07:12] 2025-10-13 14:06:08,768 | INFO     | -- intersect: -24872538197.048214
[2025-10-13 16:07:12] 2025-10-13 14:06:08,768 | INFO     | intersect: -24872538197.048214
[2025-10-13 16:07:12] 2025-10-13 14:06:08,768 | INFO     | chi2: 1.5405968864927322
[2025-10-13 16:07:12] 2025-10-13 14:06:08,768 | INFO     | current chi2=1.5405968864927322 (change=0.003532309576869402 %)
[2025-10-13 16:07:12] 2025-10-13 14:06:08,769 | INFO     | right removable region: 225
[2025-10-13 16:07:12] 2025-10-13 14:06:08,769 | INFO     | sum of square deviations: 3822136780.0
[2025-10-13 16:07:12] 2025-10-13 14:06:08,771 | INFO     | sum of deviations: -2335037117.0
[2025-10-13 16:07:12] 2025-10-13 14:06:08,771 | INFO     | mean x: 1760357218.0
[2025-10-13 16:07:12] 2025-10-13 14:06:08,771 | INFO     | mean y: 2482323.800865801
[2025-10-13 16:07:12] 2025-10-13 14:06:08,771 | INFO     | -- intersect: 1077927730.3383212
[2025-10-13 16:07:12] 2025-10-13 14:06:08,783 | INFO     | intersect: 1077927730.3383212
[2025-10-13 16:07:12] 2025-10-13 14:06:08,784 | INFO     | chi2: 0.8189935614130007
[2025-10-13 16:07:12] 2025-10-13 14:06:08,784 | INFO     | current chi2=0.8189935614130007 (change=64.60891708701658 %)
[2025-10-13 16:07:12] 2025-10-13 14:06:08,785 | INFO     | sum of square deviations: 3579276412.5
[2025-10-13 16:07:12] 2025-10-13 14:06:08,786 | INFO     | sum of deviations: -6481744374.499998
[2025-10-13 16:07:12] 2025-10-13 14:06:08,787 | INFO     | mean x: 1760357370.5
[2025-10-13 16:07:12] 2025-10-13 14:06:08,787 | INFO     | mean y: 2484893.792035398
[2025-10-13 16:07:12] 2025-10-13 14:06:08,787 | INFO     | -- intersect: 3190332147.9185658
[2025-10-13 16:07:12] 2025-10-13 14:06:08,787 | INFO     | intersect: 3190332147.9185658
[2025-10-13 16:07:12] 2025-10-13 14:06:08,787 | INFO     | chi2: 0.7933455355205712
[2025-10-13 16:07:12] 2025-10-13 14:06:08,787 | INFO     | current chi2=0.7933455355205712 (change=3.131651712643415 %)
[2025-10-13 16:07:12] 2025-10-13 14:06:08,788 | INFO     | left removable region: 20
[2025-10-13 16:07:12] 2025-10-13 14:06:08,788 | INFO     | sum of square deviations: 2671343110.0
[2025-10-13 16:07:12] 2025-10-13 14:06:08,790 | INFO     | sum of deviations: 4615236576.000001
[2025-10-13 16:07:12] 2025-10-13 14:06:08,790 | INFO     | mean x: 1760357340.0
[2025-10-13 16:07:12] 2025-10-13 14:06:08,790 | INFO     | mean y: 2496827.9414634146
[2025-10-13 16:07:12] 2025-10-13 14:06:08,790 | INFO     | -- intersect: -3038844268.2227316
[2025-10-13 16:07:12] 2025-10-13 14:06:08,790 | INFO     | intersect: -3038844268.2227316
[2025-10-13 16:07:12] 2025-10-13 14:06:08,790 | INFO     | chi2: 0.00043833239125036977
[2025-10-13 16:07:12] 2025-10-13 14:06:08,791 | INFO     | -- intersect: -3038844268.2227316
[2025-10-13 16:07:12] 2025-10-13 14:06:08,791 | INFO     | current memory leak: 1.73 B/s (using 205 data points, chi2=0.00)
[2025-10-13 16:07:12] 2025-10-13 14:06:08,791 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2025-10-13 16:07:12] 2025-10-13 14:06:08,792 | INFO     | ..............................
[2025-10-13 16:07:12] 2025-10-13 14:06:08,792 | INFO     | . Timing measurements:
[2025-10-13 16:07:12] 2025-10-13 14:06:08,792 | INFO     | . get job = 0 s
[2025-10-13 16:07:12] 2025-10-13 14:06:08,792 | INFO     | . initial setup = 3 s
[2025-10-13 16:07:12] 2025-10-13 14:06:08,792 | INFO     | . payload setup = 138 s
[2025-10-13 16:07:12] 2025-10-13 14:06:08,792 | INFO     | . stage-in = 0 s
[2025-10-13 16:07:12] 2025-10-13 14:06:08,792 | INFO     | . payload execution = 14411 s
[2025-10-13 16:07:12] 2025-10-13 14:06:08,792 | INFO     | . stage-out = 11 s
[2025-10-13 16:07:12] 2025-10-13 14:06:08,792 | INFO     | . log creation = 0 s
[2025-10-13 16:07:12] 2025-10-13 14:06:08,792 | INFO     | ..............................
[2025-10-13 16:07:12] 2025-10-13 14:06:09,073 | INFO     | PID=4787 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-13 16:07:12] 2025-10-13 14:06:09,073 | INFO     | .. there are 9 such processes running
[2025-10-13 16:07:12] 2025-10-13 14:06:09,429 | INFO     | 
[2025-10-13 16:07:12] 2025-10-13 14:06:09,430 | INFO     | job summary report
[2025-10-13 16:07:12] 2025-10-13 14:06:09,430 | INFO     | --------------------------------------------------
[2025-10-13 16:07:12] 2025-10-13 14:06:09,430 | INFO     | PanDA job id: 6840750355
[2025-10-13 16:07:12] 2025-10-13 14:06:09,430 | INFO     | task id: 46676269
[2025-10-13 16:07:12] 2025-10-13 14:06:09,430 | INFO     | errors: (none)
[2025-10-13 16:07:12] 2025-10-13 14:06:09,430 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 16:07:12] 2025-10-13 14:06:09,430 | INFO     | pilot state: finished 
[2025-10-13 16:07:12] 2025-10-13 14:06:09,431 | INFO     | transexitcode: 0
[2025-10-13 16:07:12] 2025-10-13 14:06:09,431 | INFO     | exeerrorcode: 0
[2025-10-13 16:07:12] 2025-10-13 14:06:09,431 | INFO     | exeerrordiag: 
[2025-10-13 16:07:12] 2025-10-13 14:06:09,431 | INFO     | exitcode: 0
[2025-10-13 16:07:12] 2025-10-13 14:06:09,431 | INFO     | exitmsg: OK
[2025-10-13 16:07:12] 2025-10-13 14:06:09,431 | INFO     | cpuconsumptiontime: 55317 s
[2025-10-13 16:07:12] 2025-10-13 14:06:09,431 | INFO     | nevents: 400
[2025-10-13 16:07:12] 2025-10-13 14:06:09,431 | INFO     | neventsw: 0
[2025-10-13 16:07:12] 2025-10-13 14:06:09,431 | INFO     | pid: 11377
[2025-10-13 16:07:12] 2025-10-13 14:06:09,431 | INFO     | pgrp: 11377
[2025-10-13 16:07:12] 2025-10-13 14:06:09,432 | INFO     | corecount: 8
[2025-10-13 16:07:12] 2025-10-13 14:06:09,432 | INFO     | event service: False
[2025-10-13 16:07:12] 2025-10-13 14:06:09,432 | INFO     | sizes: {0: 2348029, 1: 2348715, 2: 2348914, 13: 2348914, 23: 2348970, 34: 2348998, 45: 2349154, 56: 2349182, 66: 2349210, 77: 2349238, 88: 2349294, 96: 2349864, 99
[2025-10-13 16:07:12] 2025-10-13 14:06:09,432 | INFO     | --------------------------------------------------
[2025-10-13 16:07:12] 2025-10-13 14:06:09,432 | INFO     | 
[2025-10-13 16:07:12] 2025-10-13 14:06:09,432 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2025-10-13 16:07:12] 2025-10-13 14:06:09,762 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 16:07:12] 2025-10-13 14:06:09,762 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 16:07:12] 2025-10-13 14:06:09,762 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 16:07:12] 2025-10-13 14:06:09,762 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 16:07:12] 2025-10-13 14:06:09,763 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 16:07:12] 2025-10-13 14:06:09,763 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 16:07:12] 2025-10-13 14:06:09,763 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 16:07:12] 2025-10-13 14:06:09,763 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 16:07:12] 2025-10-13 14:06:09,763 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 16:07:12] 2025-10-13 14:06:09,763 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 16:07:12] 2025-10-13 14:06:09,763 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 16:07:12] 2025-10-13 14:06:09,763 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 16:07:12] 2025-10-13 14:06:09,763 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 16:07:12] 2025-10-13 14:06:09,763 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 16:07:12] 2025-10-13 14:06:09,763 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 16:07:12] 2025-10-13 14:06:09,764 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 16:07:12] 2025-10-13 14:06:09,764 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 16:07:12] 2025-10-13 14:06:09,764 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 16:07:12] 2025-10-13 14:06:09,764 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 16:07:12] 2025-10-13 14:06:09,764 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 16:07:12] 2025-10-13 14:06:09,764 | INFO     | job 6840750355 has completed (purged errors)
[2025-10-13 16:07:12] 2025-10-13 14:06:09,764 | INFO     | overall cleanup function is called
[2025-10-13 16:07:12] 2025-10-13 14:06:10,773 | INFO     | --- collectZombieJob: --- 10, [11377]
[2025-10-13 16:07:12] 2025-10-13 14:06:10,774 | INFO     | zombie collector waiting for pid 11377
[2025-10-13 16:07:12] 2025-10-13 14:06:10,774 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 16:07:12] 2025-10-13 14:06:10,774 | INFO     | collected zombie processes
[2025-10-13 16:07:12] 2025-10-13 14:06:10,774 | INFO     | will attempt to kill all subprocesses of pid=11377
[2025-10-13 16:07:12] 2025-10-13 14:06:10,899 | INFO     | process IDs to be killed: [11377] (in reverse order)
[2025-10-13 16:07:12] 2025-10-13 14:06:11,636 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 16:07:12] 2025-10-13 14:06:11,636 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 16:07:12] 2025-10-13 14:06:11,640 | INFO     | did not find any defunct processes belonging to 11377
[2025-10-13 16:07:12] 2025-10-13 14:06:11,643 | INFO     | did not find any defunct processes belonging to 11377
[2025-10-13 16:07:12] 2025-10-13 14:06:11,643 | INFO     | ready for new job
[2025-10-13 16:07:12] 2025-10-13 14:06:11,643 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 16:07:12] 2025-10-13 14:06:11,645 | INFO     | ***************************************
[2025-10-13 16:07:12] 2025-10-13 14:06:11,645 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 16:07:12] 2025-10-13 14:06:11,645 | INFO     | ***************************************
[2025-10-13 16:07:12] 2025-10-13 14:06:11,646 | INFO     | 
[2025-10-13 16:07:12] 2025-10-13 14:06:11,646 | INFO     | pilot is running in a VM
[2025-10-13 16:07:12] 2025-10-13 14:06:11,646 | INFO     | architecture information:
[2025-10-13 16:07:12] 2025-10-13 14:06:11,654 | INFO     | executing command: cat /etc/os-release
[2025-10-13 16:07:12] 2025-10-13 14:06:11,857 | INFO     | cat /etc/os-release:
[2025-10-13 16:07:12] NAME="CentOS Linux"
[2025-10-13 16:07:12] VERSION="7 (Core)"
[2025-10-13 16:07:12] ID="centos"
[2025-10-13 16:07:12] ID_LIKE="rhel fedora"
[2025-10-13 16:07:12] VERSION_ID="7"
[2025-10-13 16:07:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 16:07:12] ANSI_COLOR="0;31"
[2025-10-13 16:07:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 16:07:12] HOME_URL="https://www.centos.org/"
[2025-10-13 16:07:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 16:07:12] 
[2025-10-13 16:07:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 16:07:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 16:07:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 16:07:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 16:07:12] 
[2025-10-13 16:07:12] 2025-10-13 14:06:11,858 | INFO     | ***************************************
[2025-10-13 16:07:12] 2025-10-13 14:06:12,361 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2025-10-13 16:07:12] 2025-10-13 14:06:12,560 | INFO     | sufficient remaining disk space (495649292288 B)
[2025-10-13 16:07:12] 2025-10-13 14:06:12,561 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 16:07:12] 2025-10-13 14:06:12,561 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 16:07:12] 2025-10-13 14:06:12,561 | INFO     | update_server=False
[2025-10-13 16:07:12] 2025-10-13 14:06:12,561 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 16:07:12] 2025-10-13 14:06:12,564 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 16:07:12] 2025-10-13 14:06:12,564 | INFO     | aborting loop
[2025-10-13 16:07:12] 2025-10-13 14:06:12,899 | INFO     | all data control threads have been joined
[2025-10-13 16:07:12] 2025-10-13 14:06:13,239 | INFO     | all job control threads have been joined
[2025-10-13 16:07:12] 2025-10-13 14:06:13,322 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 16:07:12] 2025-10-13 14:06:13,567 | INFO     | [job] retrieve thread has finished
[2025-10-13 16:07:12] 2025-10-13 14:06:13,570 | INFO     | [job] job monitor thread has finished
[2025-10-13 16:07:12] 2025-10-13 14:06:13,906 | INFO     | [data] control thread has finished
[2025-10-13 16:07:12] 2025-10-13 14:06:13,951 | INFO     | [payload] failed_post thread has finished
[2025-10-13 16:07:12] 2025-10-13 14:06:13,959 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 16:07:12] 2025-10-13 14:06:13,972 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 16:07:12] 2025-10-13 14:06:13,991 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 16:07:12] 2025-10-13 14:06:14,002 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 16:07:12] 2025-10-13 14:06:14,033 | INFO     | all payload control threads have been joined
[2025-10-13 16:07:12] 2025-10-13 14:06:14,246 | INFO     | [job] control thread has finished
[2025-10-13 16:07:12] 2025-10-13 14:06:14,428 | INFO     | [job] validate thread has finished
[2025-10-13 16:07:12] 2025-10-13 14:06:14,495 | INFO     | [payload] validate_post thread has finished
[2025-10-13 16:07:12] 2025-10-13 14:06:14,895 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 16:07:12] 2025-10-13 14:06:14,914 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 16:07:12] 2025-10-13 14:06:15,010 | INFO     | [job] queue monitor thread has finished
[2025-10-13 16:07:12] 2025-10-13 14:06:15,039 | INFO     | [payload] control thread has finished
[2025-10-13 16:07:12] 2025-10-13 14:06:15,050 | INFO     | [data] copytool_in thread has finished
[2025-10-13 16:07:12] 2025-10-13 14:06:15,329 | INFO     | [data] copytool_out thread has finished
[2025-10-13 16:07:12] 2025-10-13 14:06:17,999 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 16:07:12] 2025-10-13 14:06:41,244 | INFO     | PID=4787 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-13 16:07:12] 2025-10-13 14:06:41,244 | INFO     | .. there are 9 such processes running
[2025-10-13 16:07:12] 2025-10-13 14:06:41,245 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 16:07:12] 2025-10-13 14:06:41,245 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 16:07:12] 2025-10-13 14:06:41,245 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 16:07:12] 2025-10-13 14:07:01,959 | INFO     | [monitor] cgroup control has ended
[2025-10-13 16:07:12] 2025-10-13 14:07:02,955 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140485714614080)>', '<ExcThread(monitor, started 140485133846272)>']
[2025-10-13 16:07:12] 2025-10-13 14:07:03,376 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 16:07:12] 2025-10-13 14:07:03,377 | INFO     | [monitor] control thread has ended
[2025-10-13 16:07:12] 2025-10-13 14:07:07,982 | INFO     | all workflow threads have been joined
[2025-10-13 16:07:12] 2025-10-13 14:07:07,982 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 16:07:12] 2025-10-13 14:07:07,982 | INFO     | traces error code: 0
[2025-10-13 16:07:12] 2025-10-13 14:07:07,983 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 16:07:12] 2025-10-13 14:07:08,681 [wrapper] ==== pilot stdout END ====
[2025-10-13 16:07:12] 2025-10-13 14:07:08,771 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 16:07:12] 2025-10-13 14:07:08,848 [wrapper] pilotpid: 4787
[2025-10-13 16:07:12] 2025-10-13 14:07:08,885 [wrapper] Pilot exit status: 0
[2025-10-13 16:07:12] 2025-10-13 14:07:09,362 [wrapper] pandaids: 6840750355
[2025-10-13 16:07:12] 2025-10-13 14:07:10,171 [wrapper] cleanup supervisor_pilot 20872 4788
[2025-10-13 16:07:12] 2025-10-13 14:07:10,258 [wrapper] Test setup, not cleaning
[2025-10-13 16:07:12] 2025-10-13 14:07:10,352 [wrapper] apfmon messages muted
[2025-10-13 16:07:12] 2025-10-13 14:07:10,411 [wrapper] ==== wrapper stdout END ====
[2025-10-13 16:07:12] 2025-10-13 14:07:10,475 [wrapper] ==== wrapper stderr END ====
[2025-10-13 16:07:12]  *** Error codes and diagnostics ***
[2025-10-13 16:07:12]     "exeErrorCode": 0,
[2025-10-13 16:07:12]     "exeErrorDiag": "",
[2025-10-13 16:07:12]     "pilotErrorCode": 0,
[2025-10-13 16:07:12]     "pilotErrorDiag": "",
[2025-10-13 16:07:12]  *** Listing of results directory ***
[2025-10-13 16:07:12] total 415304
[2025-10-13 16:07:12] -rw-r--r--. 1 boinc boinc    557409 Oct 12 23:12 pilot3.tar.gz
[2025-10-13 16:07:12] -rw-r--r--. 1 boinc boinc      5112 Oct 12 23:17 queuedata.json
[2025-10-13 16:07:12] -rwx------. 1 boinc boinc     36292 Oct 12 23:18 runpilot2-wrapper.sh
[2025-10-13 16:07:12] -rw-r--r--. 1 boinc boinc       100 Oct 13 11:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 16:07:12] -rwxr-xr-x. 1 boinc boinc      7986 Oct 13 11:54 run_atlas
[2025-10-13 16:07:12] -rw-r--r--. 1 boinc boinc       105 Oct 13 11:54 job.xml
[2025-10-13 16:07:12] -rw-r--r--. 1 boinc boinc      6391 Oct 13 11:54 init_data.xml
[2025-10-13 16:07:12] -rw-r--r--. 2 boinc boinc 220418489 Oct 13 11:54 EVNT.46676267._004779.pool.root.1
[2025-10-13 16:07:12] -rw-r--r--. 2 boinc boinc     15120 Oct 13 11:54 start_atlas.sh
[2025-10-13 16:07:12] drwxrwx--x. 2 boinc boinc        68 Oct 13 11:54 shared
[2025-10-13 16:07:12] -rw-r--r--. 2 boinc boinc    569682 Oct 13 11:54 input.tar.gz
[2025-10-13 16:07:12] -rw-r--r--. 1 boinc boinc         0 Oct 13 11:54 boinc_lockfile
[2025-10-13 16:07:12] -rw-r--r--. 1 boinc boinc      2550 Oct 13 11:54 pandaJob.out
[2025-10-13 16:07:12] -rw-------. 1 boinc boinc    972849 Oct 13 11:58 agis_schedconf.cvmfs.json
[2025-10-13 16:07:12] drwx------. 5 boinc boinc      4096 Oct 13 11:58 pilot3
[2025-10-13 16:07:12] -rw-------. 1 boinc boinc 196054359 Oct 13 16:03 HITS.46676269._089727.pool.root.1
[2025-10-13 16:07:12] -rw-r--r--. 1 boinc boinc       531 Oct 13 16:03 boinc_task_state.xml
[2025-10-13 16:07:12] -rw-------. 1 boinc boinc      1018 Oct 13 16:04 memory_monitor_summary.json
[2025-10-13 16:07:12] -rw-------. 1 boinc boinc   1560580 Oct 13 16:04 agis_ddmendpoints.agis.ALL.json
[2025-10-13 16:07:12] -rw-------. 1 boinc boinc    456199 Oct 13 16:04 log.46676269._089727.job.log.tgz.1
[2025-10-13 16:07:12] -rw-------. 1 boinc boinc      7778 Oct 13 16:06 heartbeat.json
[2025-10-13 16:07:12] -rw-------. 1 boinc boinc        95 Oct 13 16:06 pilot_heartbeat.json
[2025-10-13 16:07:12] -rw-r--r--. 1 boinc boinc      8192 Oct 13 16:07 boinc_mmap_file
[2025-10-13 16:07:12] -rw-r--r--. 1 boinc boinc        28 Oct 13 16:07 wrapper_checkpoint.txt
[2025-10-13 16:07:12] -rw-------. 1 boinc boinc      4884 Oct 13 16:07 pilotlog.txt
[2025-10-13 16:07:12] -rw-------. 1 boinc boinc   1998106 Oct 13 16:07 log.46676269._089727.job.log.1
[2025-10-13 16:07:12] -rw-------. 1 boinc boinc       357 Oct 13 16:07 output.list
[2025-10-13 16:07:12] -rw-r--r--. 1 boinc boinc       620 Oct 13 16:07 runtime_log
[2025-10-13 16:07:12] -rw-------. 1 boinc boinc   2478080 Oct 13 16:07 result.tar.gz
[2025-10-13 16:07:12] -rw-r--r--. 1 boinc boinc      8717 Oct 13 16:07 runtime_log.err
[2025-10-13 16:07:12] -rw-------. 1 boinc boinc       657 Oct 13 16:07 6c6LDmndIS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm9clNDmg8j60m.diag
[2025-10-13 16:07:12] -rw-r--r--. 1 boinc boinc     20738 Oct 13 16:07 stderr.txt
[2025-10-13 16:07:12] HITS file was successfully produced:
[2025-10-13 16:07:12] -rw-------. 1 boinc boinc 196054359 Oct 13 16:03 shared/HITS.pool.root.1
[2025-10-13 16:07:12]  *** Contents of shared directory: ***
[2025-10-13 16:07:12] total 409712
[2025-10-13 16:07:12] -rw-r--r--. 2 boinc boinc 220418489 Oct 13 11:54 ATLAS.root_0
[2025-10-13 16:07:12] -rw-r--r--. 2 boinc boinc     15120 Oct 13 11:54 start_atlas.sh
[2025-10-13 16:07:12] -rw-r--r--. 2 boinc boinc    569682 Oct 13 11:54 input.tar.gz
[2025-10-13 16:07:12] -rw-------. 1 boinc boinc 196054359 Oct 13 16:03 HITS.pool.root.1
[2025-10-13 16:07:12] -rw-------. 1 boinc boinc   2478080 Oct 13 16:07 result.tar.gz
16:07:14 (1027): run_atlas exited; CPU time 55512.090242
16:07:14 (1027): called boinc_finish(0)

</stderr_txt>
]]>

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