Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
21:25:58 (22911): wrapper (7.7.26015): starting
21:25:58 (22911): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 21:25:58] Arguments: --nthreads 12
[2025-10-12 21:25:58] Threads: 12
[2025-10-12 21:25:58] Checking for CVMFS
[2025-10-12 21:25:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 21:25:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 21:25:58] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 21:25:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 21:25:58] 2.11.2.0 2937 223659 98944 151643 3 56 10240264 20275200 1 130560 1 109976066 99.984 13767508 13165 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 21:25:58] CVMFS is ok
[2025-10-12 21:25:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 21:25:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 21:25:58] Further information can be found at the LHC@home message board.
[2025-10-12 21:25:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 21:25:58] Checking for apptainer binary...
[2025-10-12 21:25:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 21:25:58] Running /usr/bin/apptainer --version
[2025-10-12 21:25:58] apptainer version 1.3.2-1.el7
[2025-10-12 21:25:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 21:26:00] c-205-8.aglt2.org
[2025-10-12 21:26:00] apptainer works
[2025-10-12 21:26:00] Set ATHENA_PROC_NUMBER=12
[2025-10-12 21:26:00] Set ATHENA_CORE_NUMBER=12
[2025-10-12 21:26:00] Starting ATLAS job with PandaID=6840750191
[2025-10-12 21:26:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 22:40:27]  *** The last 200 lines of the pilot log: ***
[2025-10-12 22:40:27]  status_code=0
[2025-10-12 22:40:27]  storage_token=
[2025-10-12 22:40:27]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6840750191/log.46676269._089570.job.log.tgz.1
[2025-10-12 22:40:27]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6f/94/log.46676269._089570.job.log.tgz.1
[2025-10-12 22:40:27]  workdir=None
[2025-10-12 22:40:27] ]
[2025-10-12 22:40:27] 2025-10-13 02:39:25,984 | INFO     | transferring file log.46676269._089570.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6840750191/log.46676269._089570.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 22:40:27] 2025-10-13 02:39:25,984 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6840750191/log.46676269._089570.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._089570.job
[2025-10-12 22:40:27] 2025-10-13 02:39:26,006 | INFO     | adding to output.list: log.46676269._089570.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6f/94/log.46676269._089570.job.log.tg
[2025-10-12 22:40:27] 2025-10-13 02:39:26,007 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 22:40:27] 2025-10-13 02:39:26,007 | INFO     | summary of transferred files:
[2025-10-12 22:40:27] 2025-10-13 02:39:26,007 | INFO     |  -- lfn=log.46676269._089570.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 22:40:27] 2025-10-13 02:39:26,008 | INFO     | stage-out finished correctly
[2025-10-12 22:40:27] 2025-10-13 02:39:26,091 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 22:40:27] 2025-10-13 02:39:26,170 | INFO     | job 6840750191 has state=finished
[2025-10-12 22:40:27] 2025-10-13 02:39:26,171 | INFO     | preparing for final server update for job 6840750191 in state='finished'
[2025-10-12 22:40:27] 2025-10-13 02:39:26,261 | WARNING  | process 1531 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 22:40:27] 2025-10-13 02:39:26,261 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840750191/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 22:40:27] 2025-10-13 02:39:26,349 | INFO     | number of running child processes to parent process 1531: 1
[2025-10-12 22:40:27] 2025-10-13 02:39:26,350 | INFO     | maximum number of monitored processes: 6
[2025-10-12 22:40:27] 2025-10-13 02:39:26,565 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-12 22:40:27] 2025-10-13 02:39:26,565 | INFO     | this job has now completed (state=finished)
[2025-10-12 22:40:27] 2025-10-13 02:39:26,565 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 22:40:27] 2025-10-13 02:39:26,565 | INFO     | log transfer has been attempted: DONE
[2025-10-12 22:40:27] 2025-10-13 02:39:26,566 | INFO     | job 6840750191 has finished - writing final server update
[2025-10-12 22:40:27] 2025-10-13 02:39:26,566 | INFO     | total number of processed events: 400 (read)
[2025-10-12 22:40:27] 2025-10-13 02:39:26,567 | INFO     | executing command: lscpu
[2025-10-12 22:40:27] 2025-10-13 02:39:26,593 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 22:40:27] 2025-10-13 02:39:27,105 | INFO     | time since job start (4392s) is within the limit (172800.0s)
[2025-10-12 22:40:27] 2025-10-13 02:39:28,227 | INFO     | PID=26629 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 22:40:27] 2025-10-13 02:39:28,853 | INFO     | monitor loop #326: job 0:6840750191 is in state 'finished'
[2025-10-12 22:40:27] 2025-10-13 02:39:28,853 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 22:40:27] 2025-10-13 02:39:29,227 | INFO     | time since job start (4394s) is within the limit (172800.0s)
[2025-10-12 22:40:27] 2025-10-13 02:39:31,232 | INFO     | time since job start (4396s) is within the limit (172800.0s)
[2025-10-12 22:40:27] 2025-10-13 02:39:31,274 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 22:40:27] 2025-10-13 02:39:31,278 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-10-12 22:40:27] 2025-10-13 02:39:31,280 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840750191/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 22:40:27] 2025-10-13 02:39:31,280 | INFO     | extracted standard info from prmon json
[2025-10-12 22:40:27] 2025-10-13 02:39:31,281 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 22:40:27] 2025-10-13 02:39:31,281 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 22:40:27] 2025-10-13 02:39:31,281 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 22:40:27] 2025-10-13 02:39:31,281 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 22:40:27] 2025-10-13 02:39:31,282 | INFO     | fitting pss+swap vs Time
[2025-10-12 22:40:27] 2025-10-13 02:39:31,283 | INFO     | sum of square deviations: 85136480.0
[2025-10-12 22:40:27] 2025-10-13 02:39:31,283 | INFO     | sum of deviations: -7977741284.0
[2025-10-12 22:40:27] 2025-10-13 02:39:31,283 | INFO     | mean x: 1760321060.0
[2025-10-12 22:40:27] 2025-10-13 02:39:31,283 | INFO     | mean y: 2825372.4615384615
[2025-10-12 22:40:27] 2025-10-13 02:39:31,283 | INFO     | -- intersect: 164954277364.09476
[2025-10-12 22:40:27] 2025-10-13 02:39:31,283 | INFO     | intersect: 164954277364.09476
[2025-10-12 22:40:27] 2025-10-13 02:39:31,284 | INFO     | chi2: 0.05842014405357071
[2025-10-12 22:40:27] 2025-10-13 02:39:31,284 | INFO     | -- intersect: 164954277364.09476
[2025-10-12 22:40:27] 2025-10-13 02:39:31,284 | INFO     | current memory leak: -93.71 B/s (using 65 data points, chi2=0.06)
[2025-10-12 22:40:27] 2025-10-13 02:39:31,284 | INFO     | could have reported an average CPU frequency of 2036 MHz (6 samples)
[2025-10-12 22:40:27] 2025-10-13 02:39:31,284 | INFO     | ..............................
[2025-10-12 22:40:27] 2025-10-13 02:39:31,284 | INFO     | . Timing measurements:
[2025-10-12 22:40:27] 2025-10-13 02:39:31,285 | INFO     | . get job = 0 s
[2025-10-12 22:40:27] 2025-10-13 02:39:31,285 | INFO     | . initial setup = 2 s
[2025-10-12 22:40:27] 2025-10-13 02:39:31,285 | INFO     | . payload setup = 7 s
[2025-10-12 22:40:27] 2025-10-13 02:39:31,285 | INFO     | . stage-in = 0 s
[2025-10-12 22:40:27] 2025-10-13 02:39:31,285 | INFO     | . payload execution = 4362 s
[2025-10-12 22:40:27] 2025-10-13 02:39:31,285 | INFO     | . stage-out = 0 s
[2025-10-12 22:40:27] 2025-10-13 02:39:31,285 | INFO     | . log creation = 0 s
[2025-10-12 22:40:27] 2025-10-13 02:39:31,285 | INFO     | ..............................
[2025-10-12 22:40:27] 2025-10-13 02:39:31,819 | INFO     | 
[2025-10-12 22:40:27] 2025-10-13 02:39:31,819 | INFO     | job summary report
[2025-10-12 22:40:27] 2025-10-13 02:39:31,819 | INFO     | --------------------------------------------------
[2025-10-12 22:40:27] 2025-10-13 02:39:31,819 | INFO     | PanDA job id: 6840750191
[2025-10-12 22:40:27] 2025-10-13 02:39:31,820 | INFO     | task id: 46676269
[2025-10-12 22:40:27] 2025-10-13 02:39:31,820 | INFO     | errors: (none)
[2025-10-12 22:40:27] 2025-10-13 02:39:31,820 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 22:40:27] 2025-10-13 02:39:31,820 | INFO     | pilot state: finished 
[2025-10-12 22:40:27] 2025-10-13 02:39:31,820 | INFO     | transexitcode: 0
[2025-10-12 22:40:27] 2025-10-13 02:39:31,820 | INFO     | exeerrorcode: 0
[2025-10-12 22:40:27] 2025-10-13 02:39:31,821 | INFO     | exeerrordiag: 
[2025-10-12 22:40:27] 2025-10-13 02:39:31,821 | INFO     | exitcode: 0
[2025-10-12 22:40:27] 2025-10-13 02:39:31,821 | INFO     | exitmsg: OK
[2025-10-12 22:40:27] 2025-10-13 02:39:31,821 | INFO     | cpuconsumptiontime: 46824 s
[2025-10-12 22:40:27] 2025-10-13 02:39:31,821 | INFO     | nevents: 400
[2025-10-12 22:40:27] 2025-10-13 02:39:31,821 | INFO     | neventsw: 0
[2025-10-12 22:40:27] 2025-10-13 02:39:31,821 | INFO     | pid: 1531
[2025-10-12 22:40:27] 2025-10-13 02:39:31,822 | INFO     | pgrp: 1531
[2025-10-12 22:40:27] 2025-10-13 02:39:31,822 | INFO     | corecount: 12
[2025-10-12 22:40:27] 2025-10-13 02:39:31,822 | INFO     | event service: False
[2025-10-12 22:40:27] 2025-10-13 02:39:31,822 | INFO     | sizes: {0: 2348630, 1: 2348885, 6: 2349147, 12: 2349175, 4373: 2375223, 4374: 2375222, 4375: 2384460, 4380: 2384598}
[2025-10-12 22:40:27] 2025-10-13 02:39:31,822 | INFO     | --------------------------------------------------
[2025-10-12 22:40:27] 2025-10-13 02:39:31,822 | INFO     | 
[2025-10-12 22:40:27] 2025-10-13 02:39:31,823 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 22:40:27] 2025-10-13 02:39:31,848 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 22:40:27] 2025-10-13 02:39:31,849 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 22:40:27] 2025-10-13 02:39:31,849 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 22:40:27] 2025-10-13 02:39:31,849 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 22:40:27] 2025-10-13 02:39:31,849 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 22:40:27] 2025-10-13 02:39:31,849 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 22:40:27] 2025-10-13 02:39:31,849 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 22:40:27] 2025-10-13 02:39:31,850 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 22:40:27] 2025-10-13 02:39:31,850 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 22:40:27] 2025-10-13 02:39:31,850 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 22:40:27] 2025-10-13 02:39:31,850 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 22:40:27] 2025-10-13 02:39:31,850 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 22:40:27] 2025-10-13 02:39:31,850 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 22:40:27] 2025-10-13 02:39:31,851 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 22:40:27] 2025-10-13 02:39:31,851 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 22:40:27] 2025-10-13 02:39:31,851 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 22:40:27] 2025-10-13 02:39:31,851 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 22:40:27] 2025-10-13 02:39:31,851 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 22:40:27] 2025-10-13 02:39:31,851 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 22:40:27] 2025-10-13 02:39:31,852 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 22:40:27] 2025-10-13 02:39:31,852 | INFO     | job 6840750191 has completed (purged errors)
[2025-10-12 22:40:27] 2025-10-13 02:39:31,852 | INFO     | overall cleanup function is called
[2025-10-12 22:40:27] 2025-10-13 02:39:32,861 | INFO     | --- collectZombieJob: --- 10, [1531]
[2025-10-12 22:40:27] 2025-10-13 02:39:32,861 | INFO     | zombie collector waiting for pid 1531
[2025-10-12 22:40:27] 2025-10-13 02:39:32,861 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 22:40:27] 2025-10-13 02:39:32,861 | INFO     | collected zombie processes
[2025-10-12 22:40:27] 2025-10-13 02:39:32,862 | INFO     | will attempt to kill all subprocesses of pid=1531
[2025-10-12 22:40:27] 2025-10-13 02:39:32,953 | INFO     | process IDs to be killed: [1531] (in reverse order)
[2025-10-12 22:40:27] 2025-10-13 02:39:33,008 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 22:40:27] 2025-10-13 02:39:33,008 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 22:40:27] 2025-10-13 02:39:33,011 | INFO     | did not find any defunct processes belonging to 1531
[2025-10-12 22:40:27] 2025-10-13 02:39:33,013 | INFO     | did not find any defunct processes belonging to 1531
[2025-10-12 22:40:27] 2025-10-13 02:39:33,013 | INFO     | ready for new job
[2025-10-12 22:40:27] 2025-10-13 02:39:33,013 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 22:40:27] 2025-10-13 02:39:33,014 | INFO     | ***************************************
[2025-10-12 22:40:27] 2025-10-13 02:39:33,015 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 22:40:27] 2025-10-13 02:39:33,015 | INFO     | ***************************************
[2025-10-12 22:40:27] 2025-10-13 02:39:33,015 | INFO     | 
[2025-10-12 22:40:27] 2025-10-13 02:39:33,015 | INFO     | architecture information:
[2025-10-12 22:40:27] 2025-10-13 02:39:33,016 | INFO     | executing command: cat /etc/os-release
[2025-10-12 22:40:27] 2025-10-13 02:39:33,033 | INFO     | cat /etc/os-release:
[2025-10-12 22:40:27] NAME="CentOS Linux"
[2025-10-12 22:40:27] VERSION="7 (Core)"
[2025-10-12 22:40:27] ID="centos"
[2025-10-12 22:40:27] ID_LIKE="rhel fedora"
[2025-10-12 22:40:27] VERSION_ID="7"
[2025-10-12 22:40:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 22:40:27] ANSI_COLOR="0;31"
[2025-10-12 22:40:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 22:40:27] HOME_URL="https://www.centos.org/"
[2025-10-12 22:40:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 22:40:27] 
[2025-10-12 22:40:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 22:40:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 22:40:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 22:40:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 22:40:27] 
[2025-10-12 22:40:27] 2025-10-13 02:39:33,033 | INFO     | ***************************************
[2025-10-12 22:40:27] 2025-10-13 02:39:33,536 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 22:40:27] 2025-10-13 02:39:33,555 | INFO     | sufficient remaining disk space (29353836544 B)
[2025-10-12 22:40:27] 2025-10-13 02:39:33,556 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 22:40:27] 2025-10-13 02:39:33,556 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 22:40:27] 2025-10-13 02:39:33,556 | INFO     | update_server=False
[2025-10-12 22:40:27] 2025-10-13 02:39:33,556 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 22:40:27] 2025-10-13 02:39:33,605 | INFO     | all payload control threads have been joined
[2025-10-12 22:40:27] 2025-10-13 02:39:33,861 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 22:40:27] 2025-10-13 02:39:33,861 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 22:40:27] 2025-10-13 02:39:33,862 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:40:27] 2025-10-13 02:39:33,862 | INFO     | will abort loop
[2025-10-12 22:40:27] 2025-10-13 02:39:34,103 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 22:40:27] 2025-10-13 02:39:34,406 | INFO     | all data control threads have been joined
[2025-10-12 22:40:27] 2025-10-13 02:39:34,438 | INFO     | all job control threads have been joined
[2025-10-12 22:40:27] 2025-10-13 02:39:34,562 | INFO     | [job] retrieve thread has finished
[2025-10-12 22:40:27] 2025-10-13 02:39:34,610 | INFO     | [payload] control thread has finished
[2025-10-12 22:40:27] 2025-10-13 02:39:34,729 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 22:40:27] 2025-10-13 02:39:34,863 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 22:40:27] 2025-10-13 02:39:34,867 | INFO     | [job] job monitor thread has finished
[2025-10-12 22:40:27] 2025-10-13 02:39:35,009 | INFO     | [payload] failed_post thread has finished
[2025-10-12 22:40:27] 2025-10-13 02:39:35,179 | INFO     | [data] copytool_in thread has finished
[2025-10-12 22:40:27] 2025-10-13 02:39:35,411 | INFO     | [data] control thread has finished
[2025-10-12 22:40:27] 2025-10-13 02:39:35,444 | INFO     | [job] control thread has finished
[2025-10-12 22:40:27] 2025-10-13 02:39:35,587 | INFO     | [payload] validate_post thread has finished
[2025-10-12 22:40:27] 2025-10-13 02:39:35,640 | INFO     | [job] validate thread has finished
[2025-10-12 22:40:27] 2025-10-13 02:39:35,826 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 22:40:27] 2025-10-13 02:39:36,108 | INFO     | [data] copytool_out thread has finished
[2025-10-12 22:40:27] 2025-10-13 02:39:36,377 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:40:27] 2025-10-13 02:39:36,680 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 22:40:27] 2025-10-13 02:39:37,383 | INFO     | [job] queue monitor thread has finished
[2025-10-12 22:40:27] 2025-10-13 02:39:40,685 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 22:40:27] 2025-10-13 02:39:43,960 | INFO     | job.realtimelogging is not enabled
[2025-10-12 22:40:27] 2025-10-13 02:39:44,966 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 22:40:27] 2025-10-13 02:40:04,436 | INFO     | PID=26629 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 22:40:27] 2025-10-13 02:40:04,436 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 22:40:27] 2025-10-13 02:40:04,436 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 22:40:27] 2025-10-13 02:40:04,437 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 22:40:27] 2025-10-13 02:40:21,461 | INFO     | [monitor] cgroup control has ended
[2025-10-12 22:40:27] 2025-10-13 02:40:22,472 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139905523853120)>', '<ExcThread(monitor, started 139905220974336)>']
[2025-10-12 22:40:27] 2025-10-13 02:40:22,528 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 22:40:27] 2025-10-13 02:40:22,528 | INFO     | [monitor] control thread has ended
[2025-10-12 22:40:27] 2025-10-13 02:40:27,498 | INFO     | all workflow threads have been joined
[2025-10-12 22:40:27] 2025-10-13 02:40:27,498 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 22:40:27] 2025-10-13 02:40:27,498 | INFO     | traces error code: 0
[2025-10-12 22:40:27] 2025-10-13 02:40:27,499 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 22:40:27] 2025-10-13 02:40:27,591 [wrapper] ==== pilot stdout END ====
[2025-10-12 22:40:27] 2025-10-13 02:40:27,595 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 22:40:27] 2025-10-13 02:40:27,599 [wrapper] pilotpid: 26629
[2025-10-12 22:40:27] 2025-10-13 02:40:27,603 [wrapper] Pilot exit status: 0
[2025-10-12 22:40:27] 2025-10-13 02:40:27,618 [wrapper] pandaids: 6840750191
[2025-10-12 22:40:27] 2025-10-13 02:40:27,667 [wrapper] cleanup supervisor_pilot 16901 26630
[2025-10-12 22:40:27] 2025-10-13 02:40:27,671 [wrapper] Test setup, not cleaning
[2025-10-12 22:40:27] 2025-10-13 02:40:27,675 [wrapper] apfmon messages muted
[2025-10-12 22:40:27] 2025-10-13 02:40:27,679 [wrapper] ==== wrapper stdout END ====
[2025-10-12 22:40:27] 2025-10-13 02:40:27,683 [wrapper] ==== wrapper stderr END ====
[2025-10-12 22:40:27]  *** Error codes and diagnostics ***
[2025-10-12 22:40:27]     "exeErrorCode": 0,
[2025-10-12 22:40:27]     "exeErrorDiag": "",
[2025-10-12 22:40:27]     "pilotErrorCode": 0,
[2025-10-12 22:40:27]     "pilotErrorDiag": "",
[2025-10-12 22:40:27]  *** Listing of results directory ***
[2025-10-12 22:40:27] total 411728
[2025-10-12 22:40:27] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 16:55 pilot3.tar.gz
[2025-10-12 22:40:27] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 17:10 queuedata.json
[2025-10-12 22:40:27] -rwx------ 1 boincer umatlas     36292 Oct 12 17:11 runpilot2-wrapper.sh
[2025-10-12 22:40:27] -rw-r--r-- 1 boincer umatlas       100 Oct 12 21:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 22:40:27] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 21:25 run_atlas
[2025-10-12 22:40:27] -rw-r--r-- 1 boincer umatlas       105 Oct 12 21:25 job.xml
[2025-10-12 22:40:27] -rw-r--r-- 2 boincer umatlas 221252104 Oct 12 21:25 EVNT.46676267._004772.pool.root.1
[2025-10-12 22:40:27] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 21:25 start_atlas.sh
[2025-10-12 22:40:27] drwxrwx--x 2 boincer umatlas      4096 Oct 12 21:25 shared
[2025-10-12 22:40:27] -rw-r--r-- 2 boincer umatlas    569683 Oct 12 21:25 input.tar.gz
[2025-10-12 22:40:27] -rw-r--r-- 1 boincer umatlas         0 Oct 12 21:25 boinc_lockfile
[2025-10-12 22:40:27] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 21:26 pandaJob.out
[2025-10-12 22:40:27] -rw------- 1 boincer umatlas    975595 Oct 12 21:26 agis_schedconf.cvmfs.json
[2025-10-12 22:40:27] -rw------- 1 boincer umatlas   1560580 Oct 12 21:26 agis_ddmendpoints.agis.ALL.json
[2025-10-12 22:40:27] drwx------ 5 boincer umatlas      4096 Oct 12 21:26 pilot3
[2025-10-12 22:40:27] -rw-r--r-- 1 boincer umatlas      5952 Oct 12 22:38 init_data.xml
[2025-10-12 22:40:27] -rw------- 1 boincer umatlas 194383443 Oct 12 22:38 HITS.46676269._089570.pool.root.1
[2025-10-12 22:40:27] -rw-r--r-- 1 boincer umatlas       530 Oct 12 22:39 boinc_task_state.xml
[2025-10-12 22:40:27] -rw------- 1 boincer umatlas        95 Oct 12 22:39 pilot_heartbeat.json
[2025-10-12 22:40:27] -rw------- 1 boincer umatlas      1049 Oct 12 22:39 memory_monitor_summary.json
[2025-10-12 22:40:27] -rw------- 1 boincer umatlas    398411 Oct 12 22:39 log.46676269._089570.job.log.tgz.1
[2025-10-12 22:40:27] -rw------- 1 boincer umatlas      7858 Oct 12 22:39 heartbeat.json
[2025-10-12 22:40:27] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 22:40 boinc_mmap_file
[2025-10-12 22:40:27] -rw-r--r-- 1 boincer umatlas        27 Oct 12 22:40 wrapper_checkpoint.txt
[2025-10-12 22:40:27] -rw------- 1 boincer umatlas      5004 Oct 12 22:40 pilotlog.txt
[2025-10-12 22:40:27] -rw------- 1 boincer umatlas    638091 Oct 12 22:40 log.46676269._089570.job.log.1
[2025-10-12 22:40:27] -rw------- 1 boincer umatlas       357 Oct 12 22:40 output.list
[2025-10-12 22:40:27] -rw-r--r-- 1 boincer umatlas       620 Oct 12 22:40 runtime_log
[2025-10-12 22:40:27] -rw------- 1 boincer umatlas   1054720 Oct 12 22:40 result.tar.gz
[2025-10-12 22:40:27] -rw-r--r-- 1 boincer umatlas      8700 Oct 12 22:40 runtime_log.err
[2025-10-12 22:40:27] -rw------- 1 boincer umatlas       658 Oct 12 22:40 NtuKDmmWIS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmXalNDmB5HNXm.diag
[2025-10-12 22:40:27] -rw-r--r-- 1 boincer umatlas     22160 Oct 12 22:40 stderr.txt
[2025-10-12 22:40:27] HITS file was successfully produced:
[2025-10-12 22:40:27] -rw------- 1 boincer umatlas 194383443 Oct 12 22:38 shared/HITS.pool.root.1
[2025-10-12 22:40:27]  *** Contents of shared directory: ***
[2025-10-12 22:40:27] total 407508
[2025-10-12 22:40:27] -rw-r--r-- 2 boincer umatlas 221252104 Oct 12 21:25 ATLAS.root_0
[2025-10-12 22:40:27] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 21:25 start_atlas.sh
[2025-10-12 22:40:27] -rw-r--r-- 2 boincer umatlas    569683 Oct 12 21:25 input.tar.gz
[2025-10-12 22:40:27] -rw------- 1 boincer umatlas 194383443 Oct 12 22:38 HITS.pool.root.1
[2025-10-12 22:40:27] -rw------- 1 boincer umatlas   1054720 Oct 12 22:40 result.tar.gz
22:40:29 (22911): run_atlas exited; CPU time 46806.769721
22:40:29 (22911): called boinc_finish(0)

</stderr_txt>
]]>

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