Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:24:24 (3873950): wrapper (7.7.26015): starting
13:24:24 (3873950): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 13:24:24] Arguments: --nthreads 4
[2025-10-13 13:24:24] Threads: 4
[2025-10-13 13:24:24] Checking for CVMFS
[2025-10-13 13:24:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 13:24:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 13:24:25] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 13:24:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 13:24:25] 2.9.2.0 1861142 5577 98828 151660 2 57 23260710 36864000 0 130560 0 5106488 99.992 200139 902 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 13:24:25] CVMFS is ok
[2025-10-13 13:24:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 13:24:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 13:24:25] Further information can be found at the LHC@home message board.
[2025-10-13 13:24:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 13:24:25] Checking for apptainer binary...
[2025-10-13 13:24:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 13:24:25] Running /usr/bin/apptainer --version
[2025-10-13 13:24:25] apptainer version 1.4.1-1.1
[2025-10-13 13:24:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 13:24:25] thA319
[2025-10-13 13:24:25] apptainer works
[2025-10-13 13:24:25] Set ATHENA_PROC_NUMBER=4
[2025-10-13 13:24:25] Set ATHENA_CORE_NUMBER=4
[2025-10-13 13:24:25] Starting ATLAS job with PandaID=6840750344
[2025-10-13 13:24:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 14:35:45]  *** The last 200 lines of the pilot log: ***
[2025-10-13 14:35:45] 2025-10-13 12:35:04,187 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 14:35:45] 2025-10-13 12:35:04,187 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 14:35:45] 2025-10-13 12:35:04,187 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 14:35:45] 2025-10-13 12:35:04,187 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 14:35:45] 2025-10-13 12:35:04,187 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 14:35:45] 2025-10-13 12:35:04,187 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 14:35:45] 2025-10-13 12:35:04,187 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 14:35:45] 2025-10-13 12:35:04,187 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 14:35:45] 2025-10-13 12:35:04,187 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 14:35:45] 2025-10-13 12:35:04,187 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 14:35:45] 2025-10-13 12:35:04,187 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 14:35:45] 2025-10-13 12:35:04,187 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 14:35:45] 2025-10-13 12:35:04,187 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 14:35:45] 2025-10-13 12:35:04,187 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 14:35:45] 2025-10-13 12:35:04,187 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 14:35:45] 2025-10-13 12:35:04,187 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 14:35:45] 2025-10-13 12:35:04,188 | INFO     | job 6840750344 has completed (purged errors)
[2025-10-13 14:35:45] 2025-10-13 12:35:04,188 | INFO     | overall cleanup function is called
[2025-10-13 14:35:45] 2025-10-13 12:35:05,194 | INFO     | --- collectZombieJob: --- 10, [3884315]
[2025-10-13 14:35:45] 2025-10-13 12:35:05,194 | INFO     | zombie collector waiting for pid 3884315
[2025-10-13 14:35:45] 2025-10-13 12:35:05,194 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 14:35:45] 2025-10-13 12:35:05,194 | INFO     | collected zombie processes
[2025-10-13 14:35:45] 2025-10-13 12:35:05,194 | INFO     | will attempt to kill all subprocesses of pid=3884315
[2025-10-13 14:35:45] 2025-10-13 12:35:05,244 | INFO     | process IDs to be killed: [3884315] (in reverse order)
[2025-10-13 14:35:45] 2025-10-13 12:35:05,279 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 14:35:45] 2025-10-13 12:35:05,279 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 14:35:45] 2025-10-13 12:35:05,281 | INFO     | did not find any defunct processes belonging to 3884315
[2025-10-13 14:35:45] 2025-10-13 12:35:05,282 | INFO     | did not find any defunct processes belonging to 3884315
[2025-10-13 14:35:45] 2025-10-13 12:35:05,282 | INFO     | ready for new job
[2025-10-13 14:35:45] 2025-10-13 12:35:05,282 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 14:35:45] 2025-10-13 12:35:05,283 | INFO     | ***************************************
[2025-10-13 14:35:45] 2025-10-13 12:35:05,283 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 14:35:45] 2025-10-13 12:35:05,283 | INFO     | ***************************************
[2025-10-13 14:35:45] 2025-10-13 12:35:05,283 | INFO     | 
[2025-10-13 14:35:45] 2025-10-13 12:35:05,284 | INFO     | architecture information:
[2025-10-13 14:35:45] 2025-10-13 12:35:05,284 | INFO     | executing command: cat /etc/os-release
[2025-10-13 14:35:45] 2025-10-13 12:35:05,297 | INFO     | cat /etc/os-release:
[2025-10-13 14:35:45] NAME="CentOS Linux"
[2025-10-13 14:35:45] VERSION="7 (Core)"
[2025-10-13 14:35:45] ID="centos"
[2025-10-13 14:35:45] ID_LIKE="rhel fedora"
[2025-10-13 14:35:45] VERSION_ID="7"
[2025-10-13 14:35:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 14:35:45] ANSI_COLOR="0;31"
[2025-10-13 14:35:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 14:35:45] HOME_URL="https://www.centos.org/"
[2025-10-13 14:35:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 14:35:45] 
[2025-10-13 14:35:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 14:35:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 14:35:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 14:35:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 14:35:45] 
[2025-10-13 14:35:45] 2025-10-13 12:35:05,297 | INFO     | ***************************************
[2025-10-13 14:35:45] 2025-10-13 12:35:05,568 | WARNING  | process 3884315 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 14:35:45] 2025-10-13 12:35:05,605 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 14:35:45] 2025-10-13 12:35:05,650 | INFO     | number of running child processes to parent process 3884315: 1
[2025-10-13 14:35:45] 2025-10-13 12:35:05,650 | INFO     | maximum number of monitored processes: 6
[2025-10-13 14:35:45] 2025-10-13 12:35:05,650 | INFO     | aborting job monitoring since job object (job id=6840750344) has expired
[2025-10-13 14:35:45] 2025-10-13 12:35:05,801 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 14:35:45] 2025-10-13 12:35:05,819 | INFO     | sufficient remaining disk space (333803683840 B)
[2025-10-13 14:35:45] 2025-10-13 12:35:05,820 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 14:35:45] 2025-10-13 12:35:05,820 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 14:35:45] 2025-10-13 12:35:05,820 | INFO     | update_server=False
[2025-10-13 14:35:45] 2025-10-13 12:35:05,820 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 14:35:45] 2025-10-13 12:35:05,820 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 14:35:45] 2025-10-13 12:35:05,820 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 14:35:45] 2025-10-13 12:35:05,820 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 14:35:45] 2025-10-13 12:35:05,820 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 14:35:45] 2025-10-13 12:35:05,820 | INFO     | will abort loop
[2025-10-13 14:35:45] 2025-10-13 12:35:05,820 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-13 14:35:45] 2025-10-13 12:35:05,821 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 14:35:45] 2025-10-13 12:35:05,821 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 14:35:45] 2025-10-13 12:35:05,821 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 14:35:45] 2025-10-13 12:35:06,375 | INFO     | all payload control threads have been joined
[2025-10-13 14:35:45] 2025-10-13 12:35:06,631 | INFO     | all job control threads have been joined
[2025-10-13 14:35:45] 2025-10-13 12:35:06,690 | INFO     | all data control threads have been joined
[2025-10-13 14:35:45] 2025-10-13 12:35:06,825 | INFO     | [job] retrieve thread has finished
[2025-10-13 14:35:45] 2025-10-13 12:35:06,826 | INFO     | [job] queue monitor thread has finished
[2025-10-13 14:35:45] 2025-10-13 12:35:06,826 | INFO     | [job] job monitor thread has finished
[2025-10-13 14:35:45] 2025-10-13 12:35:07,243 | INFO     | [job] validate thread has finished
[2025-10-13 14:35:45] 2025-10-13 12:35:07,289 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 14:35:45] 2025-10-13 12:35:07,349 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 14:35:45] 2025-10-13 12:35:07,381 | INFO     | [payload] control thread has finished
[2025-10-13 14:35:45] 2025-10-13 12:35:07,467 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 14:35:45] 2025-10-13 12:35:07,636 | INFO     | [job] control thread has finished
[2025-10-13 14:35:45] 2025-10-13 12:35:07,696 | INFO     | [data] control thread has finished
[2025-10-13 14:35:45] 2025-10-13 12:35:07,718 | INFO     | [payload] failed_post thread has finished
[2025-10-13 14:35:45] 2025-10-13 12:35:07,719 | INFO     | [data] copytool_in thread has finished
[2025-10-13 14:35:45] 2025-10-13 12:35:07,826 | INFO     | [data] copytool_out thread has finished
[2025-10-13 14:35:45] 2025-10-13 12:35:07,951 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 14:35:45] 2025-10-13 12:35:08,199 | INFO     | [payload] validate_post thread has finished
[2025-10-13 14:35:45] 2025-10-13 12:35:09,827 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 14:35:45] 2025-10-13 12:35:38,162 | INFO     | [monitor] cgroup control has ended
[2025-10-13 14:35:45] 2025-10-13 12:35:40,117 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140273519257408)>', '<ExcThread(monitor, started 140272348423936)>']
[2025-10-13 14:35:45] 2025-10-13 12:35:41,005 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 14:35:45] 2025-10-13 12:35:41,005 | INFO     | [monitor] control thread has ended
[2025-10-13 14:35:45] 2025-10-13 12:35:45,143 | INFO     | all workflow threads have been joined
[2025-10-13 14:35:45] 2025-10-13 12:35:45,144 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 14:35:45] 2025-10-13 12:35:45,144 | INFO     | traces error code: 0
[2025-10-13 14:35:45] 2025-10-13 12:35:45,144 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 14:35:45] 2025-10-13 12:35:45,214 [wrapper] ==== pilot stdout END ====
[2025-10-13 14:35:45] 2025-10-13 12:35:45,218 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 14:35:45] 2025-10-13 12:35:45,221 [wrapper] pilotpid: 3877740
[2025-10-13 14:35:45] 2025-10-13 12:35:45,225 [wrapper] Pilot exit status: 0
[2025-10-13 14:35:45] 2025-10-13 12:35:45,235 [wrapper] pandaids: 6840750344
[2025-10-13 14:35:45] 2025-10-13 12:35:45,257 [wrapper] cleanup supervisor_pilot 3893968 3877741
[2025-10-13 14:35:45] 2025-10-13 12:35:45,261 [wrapper] Test setup, not cleaning
[2025-10-13 14:35:45] 2025-10-13 12:35:45,264 [wrapper] apfmon messages muted
[2025-10-13 14:35:45] 2025-10-13 12:35:45,267 [wrapper] ==== wrapper stdout END ====
[2025-10-13 14:35:45] 2025-10-13 12:35:45,271 [wrapper] ==== wrapper stderr END ====
[2025-10-13 14:35:45]  *** Error codes and diagnostics ***
[2025-10-13 14:35:45]     "exeErrorCode": 0,
[2025-10-13 14:35:45]     "exeErrorDiag": "",
[2025-10-13 14:35:45]     "pilotErrorCode": 0,
[2025-10-13 14:35:45]     "pilotErrorDiag": "",
[2025-10-13 14:35:45]  *** Listing of results directory ***
[2025-10-13 14:35:45] total 411840
[2025-10-13 14:35:45] -rw-r--r-- 1 boinc boinc    557409 Oct 12 23:12 pilot3.tar.gz
[2025-10-13 14:35:45] -rw-r--r-- 1 boinc boinc      5112 Oct 12 23:17 queuedata.json
[2025-10-13 14:35:45] -rwx------ 1 boinc boinc     36292 Oct 12 23:18 runpilot2-wrapper.sh
[2025-10-13 14:35:45] -rw-r--r-- 1 boinc boinc       100 Oct 13 13:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 14:35:45] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 13:24 run_atlas
[2025-10-13 14:35:45] -rw-r--r-- 1 boinc boinc       105 Oct 13 13:24 job.xml
[2025-10-13 14:35:45] -rw-r--r-- 2 boinc boinc 223524332 Oct 13 13:24 EVNT.46676267._004778.pool.root.1
[2025-10-13 14:35:45] -rw-r--r-- 2 boinc boinc    569681 Oct 13 13:24 input.tar.gz
[2025-10-13 14:35:45] -rw-r--r-- 2 boinc boinc     15120 Oct 13 13:24 start_atlas.sh
[2025-10-13 14:35:45] drwxrwx--x 2 boinc boinc      4096 Oct 13 13:24 shared
[2025-10-13 14:35:45] -rw-r--r-- 1 boinc boinc         0 Oct 13 13:24 boinc_setup_complete
[2025-10-13 14:35:45] -rw-r--r-- 1 boinc boinc      6370 Oct 13 13:24 init_data.xml
[2025-10-13 14:35:45] -rw-r--r-- 1 boinc boinc         0 Oct 13 13:24 boinc_lockfile
[2025-10-13 14:35:45] -rw-r--r-- 1 boinc boinc      2550 Oct 13 13:24 pandaJob.out
[2025-10-13 14:35:45] -rw------- 1 boinc boinc    972497 Oct 13 13:24 agis_schedconf.cvmfs.json
[2025-10-13 14:35:45] -rw------- 1 boinc boinc   1560580 Oct 13 13:24 agis_ddmendpoints.agis.ALL.json
[2025-10-13 14:35:45] drwx------ 5 boinc boinc      4096 Oct 13 13:24 pilot3
[2025-10-13 14:35:45] -rw------- 1 boinc boinc 192505459 Oct 13 14:34 HITS.46676269._089716.pool.root.1
[2025-10-13 14:35:45] -rw-r--r-- 1 boinc boinc       529 Oct 13 14:34 boinc_task_state.xml
[2025-10-13 14:35:45] -rw------- 1 boinc boinc      1019 Oct 13 14:34 memory_monitor_summary.json
[2025-10-13 14:35:45] -rw------- 1 boinc boinc        95 Oct 13 14:34 pilot_heartbeat.json
[2025-10-13 14:35:45] -rw------- 1 boinc boinc    269786 Oct 13 14:34 log.46676269._089716.job.log.tgz.1
[2025-10-13 14:35:45] -rw------- 1 boinc boinc      7760 Oct 13 14:35 heartbeat.json
[2025-10-13 14:35:45] -rw-r--r-- 1 boinc boinc      8192 Oct 13 14:35 boinc_mmap_file
[2025-10-13 14:35:45] -rw-r--r-- 1 boinc boinc        27 Oct 13 14:35 wrapper_checkpoint.txt
[2025-10-13 14:35:45] -rw------- 1 boinc boinc      5080 Oct 13 14:35 pilotlog.txt
[2025-10-13 14:35:45] -rw------- 1 boinc boinc    628885 Oct 13 14:35 log.46676269._089716.job.log.1
[2025-10-13 14:35:45] -rw------- 1 boinc boinc       357 Oct 13 14:35 output.list
[2025-10-13 14:35:45] -rw-r--r-- 1 boinc boinc       620 Oct 13 14:35 runtime_log
[2025-10-13 14:35:45] -rw------- 1 boinc boinc    921600 Oct 13 14:35 result.tar.gz
[2025-10-13 14:35:45] -rw-r--r-- 1 boinc boinc      8777 Oct 13 14:35 runtime_log.err
[2025-10-13 14:35:45] -rw------- 1 boinc boinc       658 Oct 13 14:35 hGvLDmndIS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmzclNDmxPUX1n.diag
[2025-10-13 14:35:45] -rw-r--r-- 1 boinc boinc     13007 Oct 13 14:35 stderr.txt
[2025-10-13 14:35:45] HITS file was successfully produced:
[2025-10-13 14:35:45] -rw------- 1 boinc boinc 192505459 Oct 13 14:34 shared/HITS.pool.root.1
[2025-10-13 14:35:45]  *** Contents of shared directory: ***
[2025-10-13 14:35:45] total 407768
[2025-10-13 14:35:45] -rw-r--r-- 2 boinc boinc 223524332 Oct 13 13:24 ATLAS.root_0
[2025-10-13 14:35:45] -rw-r--r-- 2 boinc boinc    569681 Oct 13 13:24 input.tar.gz
[2025-10-13 14:35:45] -rw-r--r-- 2 boinc boinc     15120 Oct 13 13:24 start_atlas.sh
[2025-10-13 14:35:45] -rw------- 1 boinc boinc 192505459 Oct 13 14:34 HITS.pool.root.1
[2025-10-13 14:35:45] -rw------- 1 boinc boinc    921600 Oct 13 14:35 result.tar.gz
14:35:47 (3873950): run_atlas exited; CPU time 15869.762395
14:35:47 (3873950): called boinc_finish(0)

</stderr_txt>
]]>

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