Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:54:35 (4002114): wrapper (7.7.26015): starting
12:54:35 (4002114): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 12:54:35] Arguments: --nthreads 4
[2025-10-13 12:54:35] Threads: 4
[2025-10-13 12:54:35] Checking for CVMFS
[2025-10-13 12:54:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 12:54:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 12:54:35] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 12:54:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 12:54:35] 2.9.2.0 1822434 5549 95232 151658 3 57 22598627 36864000 0 130560 0 5732272 99.993 192825 740 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 12:54:35] CVMFS is ok
[2025-10-13 12:54:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 12:54:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 12:54:35] Further information can be found at the LHC@home message board.
[2025-10-13 12:54:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 12:54:35] Checking for apptainer binary...
[2025-10-13 12:54:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 12:54:35] Running /usr/bin/apptainer --version
[2025-10-13 12:54:35] apptainer version 1.4.1-1.1
[2025-10-13 12:54:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 12:54:35] thA315b
[2025-10-13 12:54:35] apptainer works
[2025-10-13 12:54:35] Set ATHENA_PROC_NUMBER=4
[2025-10-13 12:54:35] Set ATHENA_CORE_NUMBER=4
[2025-10-13 12:54:35] Starting ATLAS job with PandaID=6840750039
[2025-10-13 12:54:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 13:55:06]  *** The last 200 lines of the pilot log: ***
[2025-10-13 13:55:06] 2025-10-13 11:54:35,292 | INFO     | zombie collector waiting for pid 4012469
[2025-10-13 13:55:06] 2025-10-13 11:54:35,292 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 13:55:06] 2025-10-13 11:54:35,292 | INFO     | collected zombie processes
[2025-10-13 13:55:06] 2025-10-13 11:54:35,292 | INFO     | will attempt to kill all subprocesses of pid=4012469
[2025-10-13 13:55:06] 2025-10-13 11:54:35,338 | INFO     | process IDs to be killed: [4012469] (in reverse order)
[2025-10-13 13:55:06] 2025-10-13 11:54:35,365 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 13:55:06] 2025-10-13 11:54:35,365 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 13:55:06] 2025-10-13 11:54:35,366 | INFO     | did not find any defunct processes belonging to 4012469
[2025-10-13 13:55:06] 2025-10-13 11:54:35,367 | INFO     | did not find any defunct processes belonging to 4012469
[2025-10-13 13:55:06] 2025-10-13 11:54:35,367 | INFO     | ready for new job
[2025-10-13 13:55:06] 2025-10-13 11:54:35,368 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 13:55:06] 2025-10-13 11:54:35,368 | INFO     | ***************************************
[2025-10-13 13:55:06] 2025-10-13 11:54:35,368 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 13:55:06] 2025-10-13 11:54:35,368 | INFO     | ***************************************
[2025-10-13 13:55:06] 2025-10-13 11:54:35,368 | INFO     | 
[2025-10-13 13:55:06] 2025-10-13 11:54:35,369 | INFO     | architecture information:
[2025-10-13 13:55:06] 2025-10-13 11:54:35,369 | INFO     | executing command: cat /etc/os-release
[2025-10-13 13:55:06] 2025-10-13 11:54:35,378 | INFO     | cat /etc/os-release:
[2025-10-13 13:55:06] NAME="CentOS Linux"
[2025-10-13 13:55:06] VERSION="7 (Core)"
[2025-10-13 13:55:06] ID="centos"
[2025-10-13 13:55:06] ID_LIKE="rhel fedora"
[2025-10-13 13:55:06] VERSION_ID="7"
[2025-10-13 13:55:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 13:55:06] ANSI_COLOR="0;31"
[2025-10-13 13:55:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 13:55:06] HOME_URL="https://www.centos.org/"
[2025-10-13 13:55:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 13:55:06] 
[2025-10-13 13:55:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 13:55:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 13:55:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 13:55:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 13:55:06] 
[2025-10-13 13:55:06] 2025-10-13 11:54:35,379 | INFO     | ***************************************
[2025-10-13 13:55:06] 2025-10-13 11:54:35,882 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 13:55:06] 2025-10-13 11:54:35,895 | INFO     | sufficient remaining disk space (336933683200 B)
[2025-10-13 13:55:06] 2025-10-13 11:54:35,895 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 13:55:06] 2025-10-13 11:54:35,895 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 13:55:06] 2025-10-13 11:54:35,895 | INFO     | update_server=False
[2025-10-13 13:55:06] 2025-10-13 11:54:35,896 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 13:55:06] 2025-10-13 11:54:35,896 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 13:55:06] 2025-10-13 11:54:35,896 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 13:55:06] 2025-10-13 11:54:35,896 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 13:55:06] 2025-10-13 11:54:35,896 | INFO     | aborting loop
[2025-10-13 13:55:06] 2025-10-13 11:54:36,271 | INFO     | all payload control threads have been joined
[2025-10-13 13:55:06] 2025-10-13 11:54:36,704 | INFO     | all job control threads have been joined
[2025-10-13 13:55:06] 2025-10-13 11:54:36,896 | INFO     | [job] retrieve thread has finished
[2025-10-13 13:55:06] 2025-10-13 11:54:36,901 | INFO     | [job] queue monitor thread has finished
[2025-10-13 13:55:06] 2025-10-13 11:54:36,901 | INFO     | all data control threads have been joined
[2025-10-13 13:55:06] 2025-10-13 11:54:36,902 | INFO     | [job] job monitor thread has finished
[2025-10-13 13:55:06] 2025-10-13 11:54:37,060 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 13:55:06] 2025-10-13 11:54:37,168 | INFO     | [data] copytool_in thread has finished
[2025-10-13 13:55:06] 2025-10-13 11:54:37,277 | INFO     | [payload] control thread has finished
[2025-10-13 13:55:06] 2025-10-13 11:54:37,390 | INFO     | [job] validate thread has finished
[2025-10-13 13:55:06] 2025-10-13 11:54:37,445 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 13:55:06] 2025-10-13 11:54:37,515 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 13:55:06] 2025-10-13 11:54:37,688 | INFO     | [payload] validate_post thread has finished
[2025-10-13 13:55:06] 2025-10-13 11:54:37,710 | INFO     | [job] control thread has finished
[2025-10-13 13:55:06] 2025-10-13 11:54:37,902 | INFO     | [data] copytool_out thread has finished
[2025-10-13 13:55:06] 2025-10-13 11:54:37,908 | INFO     | [data] control thread has finished
[2025-10-13 13:55:06] 2025-10-13 11:54:38,387 | INFO     | [payload] failed_post thread has finished
[2025-10-13 13:55:06] 2025-10-13 11:54:38,913 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 13:55:06] 2025-10-13 11:54:40,464 [wrapper] supervise_pilot (15 min periods counter: 5)
[2025-10-13 13:55:06] 2025-10-13 11:54:42,920 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 13:55:06] 2025-10-13 11:54:46,054 | INFO     | [monitor] cgroup control has ended
[2025-10-13 13:55:06] 2025-10-13 11:54:46,946 | INFO     | job.realtimelogging is not enabled
[2025-10-13 13:55:06] 2025-10-13 11:54:47,951 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 13:55:06] 2025-10-13 11:54:49,091 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140255401162560)>', '<ExcThread(monitor, started 140254732330752)>']
[2025-10-13 13:55:06] 2025-10-13 11:54:54,093 | INFO     | all workflow threads have been joined
[2025-10-13 13:55:06] 2025-10-13 11:54:54,093 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 13:55:06] 2025-10-13 11:54:54,094 | INFO     | traces error code: 0
[2025-10-13 13:55:06] 2025-10-13 11:54:54,095 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 13:55:06] 2025-10-13 11:55:06,448 | INFO     | PID=4005905 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 13:55:06] 2025-10-13 11:55:06,449 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 13:55:06] 2025-10-13 11:55:06,449 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 13:55:06] 2025-10-13 11:55:06,449 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 13:55:06] 2025-10-13 11:55:06,449 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 13:55:06] 2025-10-13 11:55:06,449 | INFO     | [monitor] control thread has ended
[2025-10-13 13:55:06] 2025-10-13 11:55:06,500 [wrapper] ==== pilot stdout END ====
[2025-10-13 13:55:06] 2025-10-13 11:55:06,502 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 13:55:06] 2025-10-13 11:55:06,505 [wrapper] pilotpid: 4005905
[2025-10-13 13:55:06] 2025-10-13 11:55:06,508 [wrapper] Pilot exit status: 0
[2025-10-13 13:55:06] 2025-10-13 11:55:06,516 [wrapper] pandaids: 6840750039
[2025-10-13 13:55:06] 2025-10-13 11:55:06,534 [wrapper] cleanup supervisor_pilot 4025302 4005906
[2025-10-13 13:55:06] 2025-10-13 11:55:06,536 [wrapper] Test setup, not cleaning
[2025-10-13 13:55:06] 2025-10-13 11:55:06,539 [wrapper] apfmon messages muted
[2025-10-13 13:55:06] 2025-10-13 11:55:06,541 [wrapper] ==== wrapper stdout END ====
[2025-10-13 13:55:06] 2025-10-13 11:55:06,544 [wrapper] ==== wrapper stderr END ====
[2025-10-13 13:55:06]  *** Error codes and diagnostics ***
[2025-10-13 13:55:06]     "exeErrorCode": 0,
[2025-10-13 13:55:06]     "exeErrorDiag": "",
[2025-10-13 13:55:06]     "pilotErrorCode": 0,
[2025-10-13 13:55:06]     "pilotErrorDiag": "",
[2025-10-13 13:55:06]  *** Listing of results directory ***
[2025-10-13 13:55:06] total 407404
[2025-10-13 13:55:06] -rw-r--r-- 1 boinc boinc    557409 Oct 12 22:55 pilot3.tar.gz
[2025-10-13 13:55:06] -rwx------ 1 boinc boinc     36292 Oct 12 23:05 runpilot2-wrapper.sh
[2025-10-13 13:55:06] -rw-r--r-- 1 boinc boinc      5112 Oct 12 23:05 queuedata.json
[2025-10-13 13:55:06] -rw-r--r-- 1 boinc boinc       100 Oct 13 12:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 13:55:06] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 12:54 run_atlas
[2025-10-13 13:55:06] -rw-r--r-- 1 boinc boinc       105 Oct 13 12:54 job.xml
[2025-10-13 13:55:06] -rw-r--r-- 2 boinc boinc 220306722 Oct 13 12:54 EVNT.46676267._004766.pool.root.1
[2025-10-13 13:55:06] -rw-r--r-- 2 boinc boinc    569673 Oct 13 12:54 input.tar.gz
[2025-10-13 13:55:06] -rw-r--r-- 2 boinc boinc     15120 Oct 13 12:54 start_atlas.sh
[2025-10-13 13:55:06] drwxrwx--x 2 boinc boinc      4096 Oct 13 12:54 shared
[2025-10-13 13:55:06] -rw-r--r-- 1 boinc boinc         0 Oct 13 12:54 boinc_setup_complete
[2025-10-13 13:55:06] -rw-r--r-- 1 boinc boinc      6443 Oct 13 12:54 init_data.xml
[2025-10-13 13:55:06] -rw-r--r-- 1 boinc boinc         0 Oct 13 12:54 boinc_lockfile
[2025-10-13 13:55:06] -rw-r--r-- 1 boinc boinc      2550 Oct 13 12:54 pandaJob.out
[2025-10-13 13:55:06] -rw------- 1 boinc boinc    972497 Oct 13 12:54 agis_schedconf.cvmfs.json
[2025-10-13 13:55:06] -rw------- 1 boinc boinc   1560580 Oct 13 12:54 agis_ddmendpoints.agis.ALL.json
[2025-10-13 13:55:06] drwx------ 5 boinc boinc      4096 Oct 13 12:54 pilot3
[2025-10-13 13:55:06] -rw------- 1 boinc boinc 191391019 Oct 13 13:54 HITS.46676269._089418.pool.root.1
[2025-10-13 13:55:06] -rw-r--r-- 1 boinc boinc       529 Oct 13 13:54 boinc_task_state.xml
[2025-10-13 13:55:06] -rw------- 1 boinc boinc      1015 Oct 13 13:54 memory_monitor_summary.json
[2025-10-13 13:55:06] -rw------- 1 boinc boinc    259397 Oct 13 13:54 log.46676269._089418.job.log.tgz.1
[2025-10-13 13:55:06] -rw------- 1 boinc boinc      7747 Oct 13 13:54 heartbeat.json
[2025-10-13 13:55:06] -rw-r--r-- 1 boinc boinc        27 Oct 13 13:54 wrapper_checkpoint.txt
[2025-10-13 13:55:06] -rw-r--r-- 1 boinc boinc      8192 Oct 13 13:54 boinc_mmap_file
[2025-10-13 13:55:06] -rw------- 1 boinc boinc       747 Oct 13 13:55 pilotlog.txt
[2025-10-13 13:55:06] -rw------- 1 boinc boinc        95 Oct 13 13:55 pilot_heartbeat.json
[2025-10-13 13:55:06] -rw------- 1 boinc boinc    540601 Oct 13 13:55 log.46676269._089418.job.log.1
[2025-10-13 13:55:06] -rw------- 1 boinc boinc       357 Oct 13 13:55 output.list
[2025-10-13 13:55:06] -rw-r--r-- 1 boinc boinc       620 Oct 13 13:55 runtime_log
[2025-10-13 13:55:06] -rw------- 1 boinc boinc    819200 Oct 13 13:55 result.tar.gz
[2025-10-13 13:55:06] -rw-r--r-- 1 boinc boinc      8782 Oct 13 13:55 runtime_log.err
[2025-10-13 13:55:06] -rw------- 1 boinc boinc       658 Oct 13 13:55 Tz7NDmtQIS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmuYlNDmwHvkWm.diag
[2025-10-13 13:55:06] -rw-r--r-- 1 boinc boinc     10709 Oct 13 13:55 stderr.txt
[2025-10-13 13:55:06] HITS file was successfully produced:
[2025-10-13 13:55:06] -rw------- 1 boinc boinc 191391019 Oct 13 13:54 shared/HITS.pool.root.1
[2025-10-13 13:55:06]  *** Contents of shared directory: ***
[2025-10-13 13:55:06] total 403436
[2025-10-13 13:55:06] -rw-r--r-- 2 boinc boinc 220306722 Oct 13 12:54 ATLAS.root_0
[2025-10-13 13:55:06] -rw-r--r-- 2 boinc boinc    569673 Oct 13 12:54 input.tar.gz
[2025-10-13 13:55:06] -rw-r--r-- 2 boinc boinc     15120 Oct 13 12:54 start_atlas.sh
[2025-10-13 13:55:06] -rw------- 1 boinc boinc 191391019 Oct 13 13:54 HITS.pool.root.1
[2025-10-13 13:55:06] -rw------- 1 boinc boinc    819200 Oct 13 13:55 result.tar.gz
13:55:08 (4002114): run_atlas exited; CPU time 13356.576876
13:55:08 (4002114): called boinc_finish(0)

</stderr_txt>
]]>

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