Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:24:18 (3376275): wrapper (7.7.26015): starting
13:24:18 (3376275): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 13:24:18] Arguments: --nthreads 3
[2025-10-13 13:24:18] Threads: 3
[2025-10-13 13:24:18] Checking for CVMFS
[2025-10-13 13:24:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 13:24:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 13:24:18] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 13:24:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 13:24:18] 2.9.2.0 233307 5723 67676 151660 3 56 3081604 36864000 0 130560 0 4187407 99.990 195764 843 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 13:24:18] CVMFS is ok
[2025-10-13 13:24:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 13:24:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 13:24:18] Further information can be found at the LHC@home message board.
[2025-10-13 13:24:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 13:24:18] Checking for apptainer binary...
[2025-10-13 13:24:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 13:24:18] Running /usr/bin/apptainer --version
[2025-10-13 13:24:18] apptainer version 1.4.1-1.1
[2025-10-13 13:24:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 13:24:18] atlasA221b
[2025-10-13 13:24:18] apptainer works
[2025-10-13 13:24:18] Set ATHENA_PROC_NUMBER=3
[2025-10-13 13:24:18] Set ATHENA_CORE_NUMBER=3
[2025-10-13 13:24:18] Starting ATLAS job with PandaID=6840962084
[2025-10-13 13:24:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 14:54:41]  *** The last 200 lines of the pilot log: ***
[2025-10-13 14:54:41] 2025-10-13 12:54:29,914 | INFO     | collected zombie processes
[2025-10-13 14:54:41] 2025-10-13 12:54:29,914 | INFO     | will attempt to kill all subprocesses of pid=3386515
[2025-10-13 14:54:41] 2025-10-13 12:54:29,969 | INFO     | process IDs to be killed: [3386515] (in reverse order)
[2025-10-13 14:54:41] 2025-10-13 12:54:29,998 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 14:54:41] 2025-10-13 12:54:29,998 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 14:54:41] 2025-10-13 12:54:30,000 | INFO     | did not find any defunct processes belonging to 3386515
[2025-10-13 14:54:41] 2025-10-13 12:54:30,001 | INFO     | did not find any defunct processes belonging to 3386515
[2025-10-13 14:54:41] 2025-10-13 12:54:30,001 | INFO     | ready for new job
[2025-10-13 14:54:41] 2025-10-13 12:54:30,001 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 14:54:41] 2025-10-13 12:54:30,002 | INFO     | ***************************************
[2025-10-13 14:54:41] 2025-10-13 12:54:30,002 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 14:54:41] 2025-10-13 12:54:30,002 | INFO     | ***************************************
[2025-10-13 14:54:41] 2025-10-13 12:54:30,002 | INFO     | 
[2025-10-13 14:54:41] 2025-10-13 12:54:30,002 | INFO     | architecture information:
[2025-10-13 14:54:41] 2025-10-13 12:54:30,003 | INFO     | executing command: cat /etc/os-release
[2025-10-13 14:54:41] 2025-10-13 12:54:30,013 | INFO     | cat /etc/os-release:
[2025-10-13 14:54:41] NAME="CentOS Linux"
[2025-10-13 14:54:41] VERSION="7 (Core)"
[2025-10-13 14:54:41] ID="centos"
[2025-10-13 14:54:41] ID_LIKE="rhel fedora"
[2025-10-13 14:54:41] VERSION_ID="7"
[2025-10-13 14:54:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 14:54:41] ANSI_COLOR="0;31"
[2025-10-13 14:54:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 14:54:41] HOME_URL="https://www.centos.org/"
[2025-10-13 14:54:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 14:54:41] 
[2025-10-13 14:54:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 14:54:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 14:54:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 14:54:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 14:54:41] 
[2025-10-13 14:54:41] 2025-10-13 12:54:30,013 | INFO     | ***************************************
[2025-10-13 14:54:41] 2025-10-13 12:54:30,516 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 14:54:41] 2025-10-13 12:54:30,529 | INFO     | sufficient remaining disk space (358065635328 B)
[2025-10-13 14:54:41] 2025-10-13 12:54:30,530 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 14:54:41] 2025-10-13 12:54:30,530 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 14:54:41] 2025-10-13 12:54:30,530 | INFO     | update_server=False
[2025-10-13 14:54:41] 2025-10-13 12:54:30,530 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 14:54:41] 2025-10-13 12:54:30,530 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-13 14:54:41] 2025-10-13 12:54:30,530 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 14:54:41] 2025-10-13 12:54:30,530 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 14:54:41] 2025-10-13 12:54:30,530 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 14:54:41] 2025-10-13 12:54:30,530 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 14:54:41] 2025-10-13 12:54:30,530 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 14:54:41] 2025-10-13 12:54:30,530 | INFO     | aborting loop
[2025-10-13 14:54:41] 2025-10-13 12:54:30,530 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 14:54:41] 2025-10-13 12:54:31,029 | INFO     | all data control threads have been joined
[2025-10-13 14:54:41] 2025-10-13 12:54:31,417 | INFO     | all payload control threads have been joined
[2025-10-13 14:54:41] 2025-10-13 12:54:31,536 | INFO     | [job] retrieve thread has finished
[2025-10-13 14:54:41] 2025-10-13 12:54:31,536 | INFO     | [job] job monitor thread has finished
[2025-10-13 14:54:41] 2025-10-13 12:54:31,563 | INFO     | all job control threads have been joined
[2025-10-13 14:54:41] 2025-10-13 12:54:31,600 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 14:54:41] 2025-10-13 12:54:32,022 | INFO     | [payload] failed_post thread has finished
[2025-10-13 14:54:41] 2025-10-13 12:54:32,034 | INFO     | [data] control thread has finished
[2025-10-13 14:54:41] 2025-10-13 12:54:32,099 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 14:54:41] 2025-10-13 12:54:32,423 | INFO     | [payload] control thread has finished
[2025-10-13 14:54:41] 2025-10-13 12:54:32,483 | INFO     | [data] copytool_in thread has finished
[2025-10-13 14:54:41] 2025-10-13 12:54:32,536 | INFO     | [data] copytool_out thread has finished
[2025-10-13 14:54:41] 2025-10-13 12:54:32,568 | INFO     | [job] control thread has finished
[2025-10-13 14:54:41] 2025-10-13 12:54:32,762 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 14:54:41] 2025-10-13 12:54:32,900 | INFO     | [job] validate thread has finished
[2025-10-13 14:54:41] 2025-10-13 12:54:32,942 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 14:54:41] 2025-10-13 12:54:33,134 | INFO     | [payload] validate_post thread has finished
[2025-10-13 14:54:41] 2025-10-13 12:54:33,451 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 14:54:41] 2025-10-13 12:54:34,457 | INFO     | [job] queue monitor thread has finished
[2025-10-13 14:54:41] 2025-10-13 12:54:34,537 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 14:54:41] 2025-10-13 12:54:35,798 | INFO     | [monitor] cgroup control has ended
[2025-10-13 14:54:41] 2025-10-13 12:54:36,804 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140063994885952)>', '<ExcThread(monitor, started 140063363028736)>']
[2025-10-13 14:54:41] 2025-10-13 12:54:37,565 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 14:54:41] 2025-10-13 12:54:37,565 | INFO     | [monitor] control thread has ended
[2025-10-13 14:54:41] 2025-10-13 12:54:41,830 | INFO     | all workflow threads have been joined
[2025-10-13 14:54:41] 2025-10-13 12:54:41,831 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 14:54:41] 2025-10-13 12:54:41,831 | INFO     | traces error code: 0
[2025-10-13 14:54:41] 2025-10-13 12:54:41,832 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 14:54:41] 2025-10-13 12:54:41,880 [wrapper] ==== pilot stdout END ====
[2025-10-13 14:54:41] 2025-10-13 12:54:41,884 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 14:54:41] 2025-10-13 12:54:41,887 [wrapper] pilotpid: 3380019
[2025-10-13 14:54:41] 2025-10-13 12:54:41,890 [wrapper] Pilot exit status: 0
[2025-10-13 14:54:41] 2025-10-13 12:54:41,899 [wrapper] pandaids: 6840962084
[2025-10-13 14:54:41] 2025-10-13 12:54:41,918 [wrapper] cleanup supervisor_pilot 3412953 3380020
[2025-10-13 14:54:41] 2025-10-13 12:54:41,921 [wrapper] Test setup, not cleaning
[2025-10-13 14:54:41] 2025-10-13 12:54:41,924 [wrapper] apfmon messages muted
[2025-10-13 14:54:41] 2025-10-13 12:54:41,927 [wrapper] ==== wrapper stdout END ====
[2025-10-13 14:54:41] 2025-10-13 12:54:41,930 [wrapper] ==== wrapper stderr END ====
[2025-10-13 14:54:41]  *** Error codes and diagnostics ***
[2025-10-13 14:54:41]     "exeErrorCode": 0,
[2025-10-13 14:54:41]     "exeErrorDiag": "",
[2025-10-13 14:54:41]     "pilotErrorCode": 0,
[2025-10-13 14:54:41]     "pilotErrorDiag": "",
[2025-10-13 14:54:41]  *** Listing of results directory ***
[2025-10-13 14:54:41] total 416012
[2025-10-13 14:54:41] -rw-r--r-- 1 boinc boinc    557409 Oct 13 01:11 pilot3.tar.gz
[2025-10-13 14:54:41] -rw-r--r-- 1 boinc boinc      5112 Oct 13 01:17 queuedata.json
[2025-10-13 14:54:41] -rwx------ 1 boinc boinc     36292 Oct 13 01:19 runpilot2-wrapper.sh
[2025-10-13 14:54:41] -rw-r--r-- 1 boinc boinc       100 Oct 13 13:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 14:54:41] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 13:24 run_atlas
[2025-10-13 14:54:41] -rw-r--r-- 1 boinc boinc       105 Oct 13 13:24 job.xml
[2025-10-13 14:54:41] -rw-r--r-- 2 boinc boinc 223472298 Oct 13 13:24 EVNT.46676267._004652.pool.root.1
[2025-10-13 14:54:41] -rw-r--r-- 2 boinc boinc    569682 Oct 13 13:24 input.tar.gz
[2025-10-13 14:54:41] -rw-r--r-- 2 boinc boinc     15120 Oct 13 13:24 start_atlas.sh
[2025-10-13 14:54:41] drwxrwx--x 2 boinc boinc      4096 Oct 13 13:24 shared
[2025-10-13 14:54:41] -rw-r--r-- 1 boinc boinc         0 Oct 13 13:24 boinc_setup_complete
[2025-10-13 14:54:41] -rw-r--r-- 1 boinc boinc      6197 Oct 13 13:24 init_data.xml
[2025-10-13 14:54:41] -rw-r--r-- 1 boinc boinc         0 Oct 13 13:24 boinc_lockfile
[2025-10-13 14:54:41] -rw-r--r-- 1 boinc boinc      2550 Oct 13 13:24 pandaJob.out
[2025-10-13 14:54:41] -rw------- 1 boinc boinc    972497 Oct 13 13:24 agis_schedconf.cvmfs.json
[2025-10-13 14:54:41] -rw------- 1 boinc boinc   1560580 Oct 13 13:24 agis_ddmendpoints.agis.ALL.json
[2025-10-13 14:54:41] drwx------ 5 boinc boinc      4096 Oct 13 13:24 pilot3
[2025-10-13 14:54:41] -rw------- 1 boinc boinc 196546053 Oct 13 14:53 HITS.46676269._092055.pool.root.1
[2025-10-13 14:54:41] -rw------- 1 boinc boinc        95 Oct 13 14:53 pilot_heartbeat.json
[2025-10-13 14:54:41] -rw-r--r-- 1 boinc boinc       530 Oct 13 14:54 boinc_task_state.xml
[2025-10-13 14:54:41] -rw------- 1 boinc boinc      1020 Oct 13 14:54 memory_monitor_summary.json
[2025-10-13 14:54:41] -rw------- 1 boinc boinc    254989 Oct 13 14:54 log.46676269._092055.job.log.tgz.1
[2025-10-13 14:54:41] -rw------- 1 boinc boinc      7770 Oct 13 14:54 heartbeat.json
[2025-10-13 14:54:41] -rw-r--r-- 1 boinc boinc      8192 Oct 13 14:54 boinc_mmap_file
[2025-10-13 14:54:41] -rw-r--r-- 1 boinc boinc        27 Oct 13 14:54 wrapper_checkpoint.txt
[2025-10-13 14:54:41] -rw------- 1 boinc boinc      4556 Oct 13 14:54 pilotlog.txt
[2025-10-13 14:54:41] -rw------- 1 boinc boinc    786464 Oct 13 14:54 log.46676269._092055.job.log.1
[2025-10-13 14:54:41] -rw------- 1 boinc boinc       357 Oct 13 14:54 output.list
[2025-10-13 14:54:41] -rw-r--r-- 1 boinc boinc       620 Oct 13 14:54 runtime_log
[2025-10-13 14:54:41] -rw------- 1 boinc boinc   1064960 Oct 13 14:54 result.tar.gz
[2025-10-13 14:54:41] -rw-r--r-- 1 boinc boinc      8797 Oct 13 14:54 runtime_log.err
[2025-10-13 14:54:41] -rw------- 1 boinc boinc       662 Oct 13 14:54 BFMLDm7WKS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDms1lNDmojPCYn.diag
[2025-10-13 14:54:41] -rw-r--r-- 1 boinc boinc     10205 Oct 13 14:54 stderr.txt
[2025-10-13 14:54:41] HITS file was successfully produced:
[2025-10-13 14:54:41] -rw------- 1 boinc boinc 196546053 Oct 13 14:53 shared/HITS.pool.root.1
[2025-10-13 14:54:41]  *** Contents of shared directory: ***
[2025-10-13 14:54:41] total 411800
[2025-10-13 14:54:41] -rw-r--r-- 2 boinc boinc 223472298 Oct 13 13:24 ATLAS.root_0
[2025-10-13 14:54:41] -rw-r--r-- 2 boinc boinc    569682 Oct 13 13:24 input.tar.gz
[2025-10-13 14:54:41] -rw-r--r-- 2 boinc boinc     15120 Oct 13 13:24 start_atlas.sh
[2025-10-13 14:54:41] -rw------- 1 boinc boinc 196546053 Oct 13 14:53 HITS.pool.root.1
[2025-10-13 14:54:41] -rw------- 1 boinc boinc   1064960 Oct 13 14:54 result.tar.gz
14:54:43 (3376275): run_atlas exited; CPU time 15541.468169
14:54:43 (3376275): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN