Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
21:13:52 (30214): wrapper (7.7.26015): starting
21:13:52 (30214): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 21:13:52] Arguments: --nthreads 12
[2025-10-12 21:13:52] Threads: 12
[2025-10-12 21:13:52] Checking for CVMFS
[2025-10-12 21:13:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 21:13:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 21:13:52] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 21:13:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 21:13:52] 2.11.2.0 3009 8914 85076 151642 3 59 19053967 20275200 1 130560 0 8551784 99.993 297034 43546 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 21:13:52] CVMFS is ok
[2025-10-12 21:13:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 21:13:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 21:13:52] Further information can be found at the LHC@home message board.
[2025-10-12 21:13:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 21:13:52] Checking for apptainer binary...
[2025-10-12 21:13:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 21:13:52] Running /usr/bin/apptainer --version
[2025-10-12 21:13:52] apptainer version 1.3.2-1.el7
[2025-10-12 21:13:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 21:13:53] c-115-42.aglt2.org
[2025-10-12 21:13:53] apptainer works
[2025-10-12 21:13:53] Set ATHENA_PROC_NUMBER=12
[2025-10-12 21:13:53] Set ATHENA_CORE_NUMBER=12
[2025-10-12 21:13:53] Starting ATLAS job with PandaID=6840750495
[2025-10-12 21:13:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 22:22:20]  *** The last 200 lines of the pilot log: ***
[2025-10-12 22:22:20] ]
[2025-10-12 22:22:20] 2025-10-13 02:21:12,845 | INFO     | transferring file log.46676269._089867.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6840750495/log.46676269._089867.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 22:22:20] 2025-10-13 02:21:12,845 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6840750495/log.46676269._089867.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._089867.job
[2025-10-12 22:22:20] 2025-10-13 02:21:12,868 | INFO     | adding to output.list: log.46676269._089867.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3f/7a/log.46676269._089867.job.log.tg
[2025-10-12 22:22:20] 2025-10-13 02:21:12,869 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 22:22:20] 2025-10-13 02:21:12,870 | INFO     | summary of transferred files:
[2025-10-12 22:22:20] 2025-10-13 02:21:12,870 | INFO     |  -- lfn=log.46676269._089867.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 22:22:20] 2025-10-13 02:21:12,870 | INFO     | stage-out finished correctly
[2025-10-12 22:22:20] 2025-10-13 02:21:12,951 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 22:22:20] 2025-10-13 02:21:13,299 | INFO     | job 6840750495 has state=finished
[2025-10-12 22:22:20] 2025-10-13 02:21:13,299 | INFO     | preparing for final server update for job 6840750495 in state='finished'
[2025-10-12 22:22:20] 2025-10-13 02:21:13,300 | INFO     | this job has now completed (state=finished)
[2025-10-12 22:22:20] 2025-10-13 02:21:13,300 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 22:22:20] 2025-10-13 02:21:13,300 | INFO     | log transfer has been attempted: DONE
[2025-10-12 22:22:20] 2025-10-13 02:21:13,301 | INFO     | job 6840750495 has finished - writing final server update
[2025-10-12 22:22:20] 2025-10-13 02:21:13,301 | INFO     | total number of processed events: 400 (read)
[2025-10-12 22:22:20] 2025-10-13 02:21:13,302 | INFO     | executing command: lscpu
[2025-10-12 22:22:20] 2025-10-13 02:21:13,329 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 22:22:20] 2025-10-13 02:21:13,424 | WARNING  | process 8098 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 22:22:20] 2025-10-13 02:21:13,424 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840750495/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 22:22:20] 2025-10-13 02:21:13,425 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840750495/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 22:22:20] 2025-10-13 02:21:13,425 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-12 22:22:20] 2025-10-13 02:21:13,426 | WARNING  | maxPSS not found in memory monitor output
[2025-10-12 22:22:20] 2025-10-13 02:21:13,426 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4560860 B
[2025-10-12 22:22:20] 2025-10-13 02:21:13,426 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16022 B
[2025-10-12 22:22:20] 2025-10-13 02:21:13,426 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 22:22:20] 2025-10-13 02:21:14,005 | INFO     | time since job start (4026s) is within the limit (172800.0s)
[2025-10-12 22:22:20] 2025-10-13 02:21:16,011 | INFO     | time since job start (4028s) is within the limit (172800.0s)
[2025-10-12 22:22:20] 2025-10-13 02:21:17,844 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 22:22:20] 2025-10-13 02:21:17,852 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1773.4166666666667
[2025-10-12 22:22:20] 2025-10-13 02:21:17,855 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840750495/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 22:22:20] 2025-10-13 02:21:17,855 | INFO     | extracted standard info from prmon json
[2025-10-12 22:22:20] 2025-10-13 02:21:17,856 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 22:22:20] 2025-10-13 02:21:17,856 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 22:22:20] 2025-10-13 02:21:17,856 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 22:22:20] 2025-10-13 02:21:17,856 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 22:22:20] 2025-10-13 02:21:17,858 | INFO     | fitting pss+swap vs Time
[2025-10-12 22:22:20] 2025-10-13 02:21:17,858 | INFO     | sum of square deviations: 63666310.0
[2025-10-12 22:22:20] 2025-10-13 02:21:17,858 | INFO     | sum of deviations: 350865351.0
[2025-10-12 22:22:20] 2025-10-13 02:21:17,858 | INFO     | mean x: 1760320150.0
[2025-10-12 22:22:20] 2025-10-13 02:21:17,858 | INFO     | mean y: 2729914.8474576273
[2025-10-12 22:22:20] 2025-10-13 02:21:17,858 | INFO     | -- intersect: -9698403185.250893
[2025-10-12 22:22:20] 2025-10-13 02:21:17,859 | INFO     | intersect: -9698403185.250893
[2025-10-12 22:22:20] 2025-10-13 02:21:17,859 | INFO     | chi2: 0.007886655391609928
[2025-10-12 22:22:20] 2025-10-13 02:21:17,859 | INFO     | -- intersect: -9698403185.250893
[2025-10-12 22:22:20] 2025-10-13 02:21:17,859 | INFO     | current memory leak: 5.51 B/s (using 59 data points, chi2=0.01)
[2025-10-12 22:22:20] 2025-10-13 02:21:17,859 | INFO     | could have reported an average CPU frequency of 2150 MHz (6 samples)
[2025-10-12 22:22:20] 2025-10-13 02:21:17,860 | INFO     | ..............................
[2025-10-12 22:22:20] 2025-10-13 02:21:17,860 | INFO     | . Timing measurements:
[2025-10-12 22:22:20] 2025-10-13 02:21:17,860 | INFO     | . get job = 0 s
[2025-10-12 22:22:20] 2025-10-13 02:21:17,860 | INFO     | . initial setup = 2 s
[2025-10-12 22:22:20] 2025-10-13 02:21:17,860 | INFO     | . payload setup = 6 s
[2025-10-12 22:22:20] 2025-10-13 02:21:17,861 | INFO     | . stage-in = 0 s
[2025-10-12 22:22:20] 2025-10-13 02:21:17,861 | INFO     | sufficient remaining disk space (18579718144 B)
[2025-10-12 22:22:20] 2025-10-13 02:21:17,861 | INFO     | . payload execution = 3997 s
[2025-10-12 22:22:20] 2025-10-13 02:21:17,862 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-12 22:22:20] 2025-10-13 02:21:17,862 | INFO     | . stage-out = 0 s
[2025-10-12 22:22:20] 2025-10-13 02:21:17,862 | INFO     | . log creation = 0 s
[2025-10-12 22:22:20] 2025-10-13 02:21:17,863 | INFO     | ..............................
[2025-10-12 22:22:20] 2025-10-13 02:21:17,940 | INFO     | 
[2025-10-12 22:22:20] 2025-10-13 02:21:17,941 | INFO     | job summary report
[2025-10-12 22:22:20] 2025-10-13 02:21:17,941 | INFO     | --------------------------------------------------
[2025-10-12 22:22:20] 2025-10-13 02:21:17,941 | INFO     | PanDA job id: 6840750495
[2025-10-12 22:22:20] 2025-10-13 02:21:17,941 | INFO     | task id: 46676269
[2025-10-12 22:22:20] 2025-10-13 02:21:17,941 | INFO     | errors: (none)
[2025-10-12 22:22:20] 2025-10-13 02:21:17,941 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 22:22:20] 2025-10-13 02:21:17,941 | INFO     | pilot state: finished 
[2025-10-12 22:22:20] 2025-10-13 02:21:17,941 | INFO     | transexitcode: 0
[2025-10-12 22:22:20] 2025-10-13 02:21:17,942 | INFO     | exeerrorcode: 0
[2025-10-12 22:22:20] 2025-10-13 02:21:17,942 | INFO     | exeerrordiag: 
[2025-10-12 22:22:20] 2025-10-13 02:21:17,942 | INFO     | exitcode: 0
[2025-10-12 22:22:20] 2025-10-13 02:21:17,942 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6840750495: 4856401 B (within 2537553920 B limit)
[2025-10-12 22:22:20] 2025-10-13 02:21:17,942 | INFO     | exitmsg: OK
[2025-10-12 22:22:20] 2025-10-13 02:21:17,942 | INFO     | cpuconsumptiontime: 42876 s
[2025-10-12 22:22:20] 2025-10-13 02:21:17,942 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6840750495/HITS.46676269._089867.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-12 22:22:20] 2025-10-13 02:21:17,942 | INFO     | nevents: 400
[2025-10-12 22:22:20] 2025-10-13 02:21:17,943 | INFO     | total size of present files: 0 B (workdir size: 4856401 B)
[2025-10-12 22:22:20] 2025-10-13 02:21:17,943 | INFO     | neventsw: 0
[2025-10-12 22:22:20] 2025-10-13 02:21:17,943 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6840750495/HITS.46676269._089867.pool.root.1 since it does not exist
[2025-10-12 22:22:20] 2025-10-13 02:21:17,943 | INFO     | pid: 8098
[2025-10-12 22:22:20] 2025-10-13 02:21:17,943 | INFO     | pgrp: 8098
[2025-10-12 22:22:20] 2025-10-13 02:21:17,943 | INFO     | corecount: 12
[2025-10-12 22:22:20] 2025-10-13 02:21:17,943 | INFO     | event service: False
[2025-10-12 22:22:20] 2025-10-13 02:21:17,944 | INFO     | sizes: {0: 2348857, 5: 2349119, 11: 2349175, 4008: 2374987, 4009: 2384041, 4014: 2384179}
[2025-10-12 22:22:20] 2025-10-13 02:21:17,944 | INFO     | --------------------------------------------------
[2025-10-12 22:22:20] 2025-10-13 02:21:17,944 | INFO     | 
[2025-10-12 22:22:20] 2025-10-13 02:21:17,944 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 22:22:20] 2025-10-13 02:21:17,967 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 22:22:20] 2025-10-13 02:21:17,967 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 22:22:20] 2025-10-13 02:21:17,967 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 22:22:20] 2025-10-13 02:21:17,967 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 22:22:20] 2025-10-13 02:21:17,967 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 22:22:20] 2025-10-13 02:21:17,968 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 22:22:20] 2025-10-13 02:21:17,968 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 22:22:20] 2025-10-13 02:21:17,968 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 22:22:20] 2025-10-13 02:21:17,968 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 22:22:20] 2025-10-13 02:21:17,968 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 22:22:20] 2025-10-13 02:21:17,968 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 22:22:20] 2025-10-13 02:21:17,969 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 22:22:20] 2025-10-13 02:21:17,969 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 22:22:20] 2025-10-13 02:21:17,969 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 22:22:20] 2025-10-13 02:21:17,969 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 22:22:20] 2025-10-13 02:21:17,969 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 22:22:20] 2025-10-13 02:21:17,969 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 22:22:20] 2025-10-13 02:21:17,970 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 22:22:20] 2025-10-13 02:21:17,970 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 22:22:20] 2025-10-13 02:21:17,970 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 22:22:20] 2025-10-13 02:21:17,970 | INFO     | job 6840750495 has completed (purged errors)
[2025-10-12 22:22:20] 2025-10-13 02:21:17,970 | INFO     | overall cleanup function is called
[2025-10-12 22:22:20] 2025-10-13 02:21:18,042 | INFO     | number of running child processes to parent process 8098: 1
[2025-10-12 22:22:20] 2025-10-13 02:21:18,042 | INFO     | maximum number of monitored processes: 6
[2025-10-12 22:22:20] 2025-10-13 02:21:18,042 | INFO     | aborting job monitoring since job object (job id=6840750495) has expired
[2025-10-12 22:22:20] 2025-10-13 02:21:18,978 | INFO     | --- collectZombieJob: --- 10, [8098]
[2025-10-12 22:22:20] 2025-10-13 02:21:18,978 | INFO     | zombie collector waiting for pid 8098
[2025-10-12 22:22:20] 2025-10-13 02:21:18,979 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 22:22:20] 2025-10-13 02:21:18,979 | INFO     | collected zombie processes
[2025-10-12 22:22:20] 2025-10-13 02:21:18,979 | INFO     | will attempt to kill all subprocesses of pid=8098
[2025-10-12 22:22:20] 2025-10-13 02:21:19,065 | INFO     | process IDs to be killed: [8098] (in reverse order)
[2025-10-12 22:22:20] 2025-10-13 02:21:19,116 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 22:22:20] 2025-10-13 02:21:19,117 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 22:22:20] 2025-10-13 02:21:19,120 | INFO     | did not find any defunct processes belonging to 8098
[2025-10-12 22:22:20] 2025-10-13 02:21:19,124 | INFO     | did not find any defunct processes belonging to 8098
[2025-10-12 22:22:20] 2025-10-13 02:21:19,124 | INFO     | ready for new job
[2025-10-12 22:22:20] 2025-10-13 02:21:19,125 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 22:22:20] 2025-10-13 02:21:19,126 | INFO     | ***************************************
[2025-10-12 22:22:20] 2025-10-13 02:21:19,126 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 22:22:20] 2025-10-13 02:21:19,126 | INFO     | ***************************************
[2025-10-12 22:22:20] 2025-10-13 02:21:19,126 | INFO     | 
[2025-10-12 22:22:20] 2025-10-13 02:21:19,127 | INFO     | architecture information:
[2025-10-12 22:22:20] 2025-10-13 02:21:19,127 | INFO     | executing command: cat /etc/os-release
[2025-10-12 22:22:20] 2025-10-13 02:21:19,141 | INFO     | cat /etc/os-release:
[2025-10-12 22:22:20] NAME="CentOS Linux"
[2025-10-12 22:22:20] VERSION="7 (Core)"
[2025-10-12 22:22:20] ID="centos"
[2025-10-12 22:22:20] ID_LIKE="rhel fedora"
[2025-10-12 22:22:20] VERSION_ID="7"
[2025-10-12 22:22:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 22:22:20] ANSI_COLOR="0;31"
[2025-10-12 22:22:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 22:22:20] HOME_URL="https://www.centos.org/"
[2025-10-12 22:22:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 22:22:20] 
[2025-10-12 22:22:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 22:22:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 22:22:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 22:22:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 22:22:20] 
[2025-10-12 22:22:20] 2025-10-13 02:21:19,142 | INFO     | ***************************************
[2025-10-12 22:22:20] 2025-10-13 02:21:19,645 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 22:22:20] 2025-10-13 02:21:19,662 | INFO     | sufficient remaining disk space (18584961024 B)
[2025-10-12 22:22:20] 2025-10-13 02:21:19,662 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 22:22:20] 2025-10-13 02:21:19,662 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 22:22:20] 2025-10-13 02:21:19,663 | INFO     | update_server=False
[2025-10-12 22:22:20] 2025-10-13 02:21:19,663 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 22:22:20] 2025-10-13 02:21:19,663 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 22:22:20] 2025-10-13 02:21:19,663 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:22:20] 2025-10-13 02:21:19,664 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:22:20] 2025-10-13 02:21:19,664 | INFO     | aborting loop
[2025-10-12 22:22:20] 2025-10-13 02:21:19,896 | INFO     | all data control threads have been joined
[2025-10-12 22:22:20] 2025-10-13 02:21:20,587 | INFO     | all job control threads have been joined
[2025-10-12 22:22:20] 2025-10-13 02:21:20,668 | INFO     | [job] retrieve thread has finished
[2025-10-12 22:22:20] 2025-10-13 02:21:20,669 | INFO     | [job] job monitor thread has finished
[2025-10-12 22:22:20] 2025-10-13 02:21:20,669 | INFO     | [job] queue monitor thread has finished
[2025-10-12 22:22:20] 2025-10-13 02:21:20,674 | INFO     | all payload control threads have been joined
[2025-10-12 22:22:20] 2025-10-13 02:21:20,901 | INFO     | [payload] validate_post thread has finished
[2025-10-12 22:22:20] 2025-10-13 02:21:20,902 | INFO     | [data] control thread has finished
[2025-10-12 22:22:20] 2025-10-13 02:21:20,958 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 22:22:20] 2025-10-13 02:21:21,265 | INFO     | [job] validate thread has finished
[2025-10-12 22:22:20] 2025-10-13 02:21:21,275 | INFO     | [payload] failed_post thread has finished
[2025-10-12 22:22:20] 2025-10-13 02:21:21,594 | INFO     | [job] control thread has finished
[2025-10-12 22:22:20] 2025-10-13 02:21:21,611 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 22:22:20] 2025-10-13 02:21:21,679 | INFO     | [payload] control thread has finished
[2025-10-12 22:22:20] 2025-10-13 02:21:21,759 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 22:22:20] 2025-10-13 02:21:21,809 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 22:22:20] 2025-10-13 02:21:21,944 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 22:22:20] 2025-10-13 02:21:21,951 | INFO     | [data] copytool_in thread has finished
[2025-10-12 22:22:20] 2025-10-13 02:21:22,964 | INFO     | [data] copytool_out thread has finished
[2025-10-12 22:22:20] 2025-10-13 02:21:23,670 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 22:22:20] 2025-10-13 02:21:49,199 | INFO     | PID=1502 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 22:22:20] 2025-10-13 02:21:49,199 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 22:22:20] 2025-10-13 02:21:49,199 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 22:22:20] 2025-10-13 02:21:49,199 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 22:22:20] 2025-10-13 02:22:13,931 | INFO     | [monitor] cgroup control has ended
[2025-10-12 22:22:20] 2025-10-13 02:22:15,572 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139907059009344)>', '<ExcThread(monitor, started 139906227607296)>']
[2025-10-12 22:22:20] 2025-10-13 02:22:16,317 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 22:22:20] 2025-10-13 02:22:16,317 | INFO     | [monitor] control thread has ended
[2025-10-12 22:22:20] 2025-10-13 02:22:20,596 | INFO     | all workflow threads have been joined
[2025-10-12 22:22:20] 2025-10-13 02:22:20,596 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 22:22:20] 2025-10-13 02:22:20,597 | INFO     | traces error code: 0
[2025-10-12 22:22:20] 2025-10-13 02:22:20,597 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 22:22:20] 2025-10-13 02:22:20,688 [wrapper] ==== pilot stdout END ====
[2025-10-12 22:22:20] 2025-10-13 02:22:20,692 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 22:22:20] 2025-10-13 02:22:20,696 [wrapper] pilotpid: 1502
[2025-10-12 22:22:20] 2025-10-13 02:22:20,700 [wrapper] Pilot exit status: 0
[2025-10-12 22:22:20] 2025-10-13 02:22:20,715 [wrapper] pandaids: 6840750495
[2025-10-12 22:22:20] 2025-10-13 02:22:20,758 [wrapper] cleanup supervisor_pilot  7322 1503
[2025-10-12 22:22:20] 2025-10-13 02:22:20,762 [wrapper] Test setup, not cleaning
[2025-10-12 22:22:20] 2025-10-13 02:22:20,765 [wrapper] apfmon messages muted
[2025-10-12 22:22:20] 2025-10-13 02:22:20,769 [wrapper] ==== wrapper stdout END ====
[2025-10-12 22:22:20] 2025-10-13 02:22:20,772 [wrapper] ==== wrapper stderr END ====
[2025-10-12 22:22:20]  *** Error codes and diagnostics ***
[2025-10-12 22:22:20]     "exeErrorCode": 0,
[2025-10-12 22:22:20]     "exeErrorDiag": "",
[2025-10-12 22:22:20]     "pilotErrorCode": 0,
[2025-10-12 22:22:20]     "pilotErrorDiag": "",
[2025-10-12 22:22:20]  *** Listing of results directory ***
[2025-10-12 22:22:20] total 412640
[2025-10-12 22:22:20] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 17:12 pilot3.tar.gz
[2025-10-12 22:22:20] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 17:19 queuedata.json
[2025-10-12 22:22:20] -rwx------ 1 boincer umatlas     36292 Oct 12 17:21 runpilot2-wrapper.sh
[2025-10-12 22:22:20] -rw-r--r-- 1 boincer umatlas       100 Oct 12 21:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 22:22:20] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 21:13 run_atlas
[2025-10-12 22:22:20] -rw-r--r-- 1 boincer umatlas       105 Oct 12 21:13 job.xml
[2025-10-12 22:22:20] -rw-r--r-- 2 boincer umatlas 220963517 Oct 12 21:13 EVNT.46676267._004827.pool.root.1
[2025-10-12 22:22:20] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 21:13 start_atlas.sh
[2025-10-12 22:22:20] drwxrwx--x 2 boincer umatlas      4096 Oct 12 21:13 shared
[2025-10-12 22:22:20] -rw-r--r-- 2 boincer umatlas    569683 Oct 12 21:13 input.tar.gz
[2025-10-12 22:22:20] -rw-r--r-- 1 boincer umatlas         0 Oct 12 21:13 boinc_lockfile
[2025-10-12 22:22:20] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 21:13 pandaJob.out
[2025-10-12 22:22:20] -rw------- 1 boincer umatlas    975603 Oct 12 21:14 agis_schedconf.cvmfs.json
[2025-10-12 22:22:20] -rw------- 1 boincer umatlas   1560580 Oct 12 21:14 agis_ddmendpoints.agis.ALL.json
[2025-10-12 22:22:20] drwx------ 5 boincer umatlas      4096 Oct 12 21:14 pilot3
[2025-10-12 22:22:20] -rw------- 1 boincer umatlas 195702908 Oct 12 22:20 HITS.46676269._089867.pool.root.1
[2025-10-12 22:22:20] -rw-r--r-- 1 boincer umatlas       529 Oct 12 22:20 boinc_task_state.xml
[2025-10-12 22:22:20] -rw------- 1 boincer umatlas        95 Oct 12 22:20 pilot_heartbeat.json
[2025-10-12 22:22:20] -rw------- 1 boincer umatlas      1049 Oct 12 22:21 memory_monitor_summary.json
[2025-10-12 22:22:20] -rw------- 1 boincer umatlas    389443 Oct 12 22:21 log.46676269._089867.job.log.tgz.1
[2025-10-12 22:22:20] -rw------- 1 boincer umatlas      7851 Oct 12 22:21 heartbeat.json
[2025-10-12 22:22:20] -rw-r--r-- 1 boincer umatlas      5954 Oct 12 22:21 init_data.xml
[2025-10-12 22:22:20] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 22:22 boinc_mmap_file
[2025-10-12 22:22:20] -rw-r--r-- 1 boincer umatlas        27 Oct 12 22:22 wrapper_checkpoint.txt
[2025-10-12 22:22:20] -rw------- 1 boincer umatlas      4745 Oct 12 22:22 pilotlog.txt
[2025-10-12 22:22:20] -rw------- 1 boincer umatlas    591298 Oct 12 22:22 log.46676269._089867.job.log.1
[2025-10-12 22:22:20] -rw------- 1 boincer umatlas       357 Oct 12 22:22 output.list
[2025-10-12 22:22:20] -rw-r--r-- 1 boincer umatlas       620 Oct 12 22:22 runtime_log
[2025-10-12 22:22:20] -rw------- 1 boincer umatlas   1003520 Oct 12 22:22 result.tar.gz
[2025-10-12 22:22:20] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 22:22 runtime_log.err
[2025-10-12 22:22:20] -rw------- 1 boincer umatlas       659 Oct 12 22:22 75zLDmjgIS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm9dlNDm1Cyrun.diag
[2025-10-12 22:22:20] -rw-r--r-- 1 boincer umatlas     22597 Oct 12 22:22 stderr.txt
[2025-10-12 22:22:20] HITS file was successfully produced:
[2025-10-12 22:22:20] -rw------- 1 boincer umatlas 195702908 Oct 12 22:20 shared/HITS.pool.root.1
[2025-10-12 22:22:20]  *** Contents of shared directory: ***
[2025-10-12 22:22:20] total 408472
[2025-10-12 22:22:20] -rw-r--r-- 2 boincer umatlas 220963517 Oct 12 21:13 ATLAS.root_0
[2025-10-12 22:22:20] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 21:13 start_atlas.sh
[2025-10-12 22:22:20] -rw-r--r-- 2 boincer umatlas    569683 Oct 12 21:13 input.tar.gz
[2025-10-12 22:22:20] -rw------- 1 boincer umatlas 195702908 Oct 12 22:20 HITS.pool.root.1
[2025-10-12 22:22:20] -rw------- 1 boincer umatlas   1003520 Oct 12 22:22 result.tar.gz
22:22:22 (30214): run_atlas exited; CPU time 42869.411962
22:22:22 (30214): called boinc_finish(0)

</stderr_txt>
]]>

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