Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
21:11:55 (15737): wrapper (7.7.26015): starting
21:11:55 (15737): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 21:11:55] Arguments: --nthreads 12
[2025-10-12 21:11:55] Threads: 12
[2025-10-12 21:11:55] Checking for CVMFS
[2025-10-12 21:11:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 21:11:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 21:11:55] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 21:11:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 21:11:56] 2.11.2.0 723 53592 84164 151642 0 59 13934503 20275201 1 130560 0 30414058 99.957 2409049 32893 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 21:11:56] CVMFS is ok
[2025-10-12 21:11:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 21:11:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 21:11:56] Further information can be found at the LHC@home message board.
[2025-10-12 21:11:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 21:11:56] Checking for apptainer binary...
[2025-10-12 21:11:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 21:11:56] Running /usr/bin/apptainer --version
[2025-10-12 21:11:56] apptainer version 1.3.2-1.el7
[2025-10-12 21:11:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 21:11:57] c-205-1.aglt2.org
[2025-10-12 21:11:57] apptainer works
[2025-10-12 21:11:57] Set ATHENA_PROC_NUMBER=12
[2025-10-12 21:11:57] Set ATHENA_CORE_NUMBER=12
[2025-10-12 21:11:57] Starting ATLAS job with PandaID=6840749815
[2025-10-12 21:11:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 22:25:25]  *** The last 200 lines of the pilot log: ***
[2025-10-12 22:25:25] 2025-10-13 02:24:43,374 | INFO     |  -- lfn=log.46676269._089243.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 22:25:25] 2025-10-13 02:24:43,375 | INFO     | stage-out finished correctly
[2025-10-12 22:25:25] 2025-10-13 02:24:44,746 | INFO     | time since job start (4352s) is within the limit (172800.0s)
[2025-10-12 22:25:25] 2025-10-13 02:24:45,942 | WARNING  | process 25916 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 22:25:25] 2025-10-13 02:24:45,942 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840749815/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 22:25:25] 2025-10-13 02:24:45,943 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840749815/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 22:25:25] 2025-10-13 02:24:45,943 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-12 22:25:25] 2025-10-13 02:24:45,943 | WARNING  | maxPSS not found in memory monitor output
[2025-10-12 22:25:25] 2025-10-13 02:24:45,944 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4599788 B
[2025-10-12 22:25:25] 2025-10-13 02:24:45,944 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15783 B
[2025-10-12 22:25:25] 2025-10-13 02:24:45,944 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 22:25:25] 2025-10-13 02:24:45,962 | INFO     | sufficient remaining disk space (29474422784 B)
[2025-10-12 22:25:25] 2025-10-13 02:24:45,963 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-12 22:25:25] 2025-10-13 02:24:45,964 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6840749815: 4897443 B (within 2537553920 B limit)
[2025-10-12 22:25:25] 2025-10-13 02:24:45,964 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6840749815/HITS.46676269._089243.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-12 22:25:25] 2025-10-13 02:24:45,964 | INFO     | total size of present files: 0 B (workdir size: 4897443 B)
[2025-10-12 22:25:25] 2025-10-13 02:24:45,964 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6840749815/HITS.46676269._089243.pool.root.1 since it does not exist
[2025-10-12 22:25:25] 2025-10-13 02:24:46,058 | INFO     | number of running child processes to parent process 25916: 1
[2025-10-12 22:25:25] 2025-10-13 02:24:46,059 | INFO     | maximum number of monitored processes: 6
[2025-10-12 22:25:25] 2025-10-13 02:24:46,693 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 22:25:25] 2025-10-13 02:24:46,757 | INFO     | time since job start (4354s) is within the limit (172800.0s)
[2025-10-12 22:25:25] 2025-10-13 02:24:46,777 | INFO     | job 6840749815 has state=finished
[2025-10-12 22:25:25] 2025-10-13 02:24:46,777 | INFO     | preparing for final server update for job 6840749815 in state='finished'
[2025-10-12 22:25:25] 2025-10-13 02:24:46,778 | INFO     | this job has now completed (state=finished)
[2025-10-12 22:25:25] 2025-10-13 02:24:46,778 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 22:25:25] 2025-10-13 02:24:46,778 | INFO     | log transfer has been attempted: DONE
[2025-10-12 22:25:25] 2025-10-13 02:24:46,778 | INFO     | job 6840749815 has finished - writing final server update
[2025-10-12 22:25:25] 2025-10-13 02:24:46,779 | INFO     | total number of processed events: 400 (read)
[2025-10-12 22:25:25] 2025-10-13 02:24:46,779 | INFO     | executing command: lscpu
[2025-10-12 22:25:25] 2025-10-13 02:24:46,810 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 22:25:25] 2025-10-13 02:24:48,562 | INFO     | monitor loop #324: job 0:6840749815 is in state 'finished'
[2025-10-12 22:25:25] 2025-10-13 02:24:48,562 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 22:25:25] 2025-10-13 02:24:48,769 | INFO     | time since job start (4356s) is within the limit (172800.0s)
[2025-10-12 22:25:25] 2025-10-13 02:24:50,775 | INFO     | time since job start (4358s) is within the limit (172800.0s)
[2025-10-12 22:25:25] 2025-10-13 02:24:51,065 | INFO     | monitor loop #325: job 0:6840749815 is in state 'finished'
[2025-10-12 22:25:25] 2025-10-13 02:24:51,066 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 22:25:25] 2025-10-13 02:24:51,599 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 22:25:25] 2025-10-13 02:24:51,603 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-10-12 22:25:25] 2025-10-13 02:24:51,606 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840749815/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 22:25:25] 2025-10-13 02:24:51,607 | INFO     | extracted standard info from prmon json
[2025-10-12 22:25:25] 2025-10-13 02:24:51,607 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 22:25:25] 2025-10-13 02:24:51,607 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 22:25:25] 2025-10-13 02:24:51,607 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 22:25:25] 2025-10-13 02:24:51,607 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 22:25:25] 2025-10-13 02:24:51,609 | INFO     | fitting pss+swap vs Time
[2025-10-12 22:25:25] 2025-10-13 02:24:51,609 | INFO     | sum of square deviations: 81266640.0
[2025-10-12 22:25:25] 2025-10-13 02:24:51,609 | INFO     | sum of deviations: -62057374.0
[2025-10-12 22:25:25] 2025-10-13 02:24:51,610 | INFO     | mean x: 1760320187.5
[2025-10-12 22:25:25] 2025-10-13 02:24:51,610 | INFO     | mean y: 2692469.1875
[2025-10-12 22:25:25] 2025-10-13 02:24:51,610 | INFO     | -- intersect: 1346919918.9188735
[2025-10-12 22:25:25] 2025-10-13 02:24:51,610 | INFO     | intersect: 1346919918.9188735
[2025-10-12 22:25:25] 2025-10-13 02:24:51,610 | INFO     | chi2: 0.005345497015361401
[2025-10-12 22:25:25] 2025-10-13 02:24:51,610 | INFO     | -- intersect: 1346919918.9188735
[2025-10-12 22:25:25] 2025-10-13 02:24:51,610 | INFO     | current memory leak: -0.76 B/s (using 64 data points, chi2=0.01)
[2025-10-12 22:25:25] 2025-10-13 02:24:51,611 | INFO     | could have reported an average CPU frequency of 2032 MHz (6 samples)
[2025-10-12 22:25:25] 2025-10-13 02:24:51,611 | INFO     | ..............................
[2025-10-12 22:25:25] 2025-10-13 02:24:51,611 | INFO     | . Timing measurements:
[2025-10-12 22:25:25] 2025-10-13 02:24:51,611 | INFO     | . get job = 0 s
[2025-10-12 22:25:25] 2025-10-13 02:24:51,611 | INFO     | . initial setup = 2 s
[2025-10-12 22:25:25] 2025-10-13 02:24:51,611 | INFO     | . payload setup = 7 s
[2025-10-12 22:25:25] 2025-10-13 02:24:51,611 | INFO     | . stage-in = 0 s
[2025-10-12 22:25:25] 2025-10-13 02:24:51,611 | INFO     | . payload execution = 4322 s
[2025-10-12 22:25:25] 2025-10-13 02:24:51,611 | INFO     | . stage-out = 0 s
[2025-10-12 22:25:25] 2025-10-13 02:24:51,612 | INFO     | . log creation = 0 s
[2025-10-12 22:25:25] 2025-10-13 02:24:51,612 | INFO     | ..............................
[2025-10-12 22:25:25] 2025-10-13 02:24:51,792 | INFO     | 
[2025-10-12 22:25:25] 2025-10-13 02:24:51,792 | INFO     | job summary report
[2025-10-12 22:25:25] 2025-10-13 02:24:51,792 | INFO     | --------------------------------------------------
[2025-10-12 22:25:25] 2025-10-13 02:24:51,792 | INFO     | PanDA job id: 6840749815
[2025-10-12 22:25:25] 2025-10-13 02:24:51,792 | INFO     | task id: 46676269
[2025-10-12 22:25:25] 2025-10-13 02:24:51,792 | INFO     | errors: (none)
[2025-10-12 22:25:25] 2025-10-13 02:24:51,793 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 22:25:25] 2025-10-13 02:24:51,793 | INFO     | pilot state: finished 
[2025-10-12 22:25:25] 2025-10-13 02:24:51,793 | INFO     | transexitcode: 0
[2025-10-12 22:25:25] 2025-10-13 02:24:51,793 | INFO     | exeerrorcode: 0
[2025-10-12 22:25:25] 2025-10-13 02:24:51,793 | INFO     | exeerrordiag: 
[2025-10-12 22:25:25] 2025-10-13 02:24:51,793 | INFO     | exitcode: 0
[2025-10-12 22:25:25] 2025-10-13 02:24:51,794 | INFO     | exitmsg: OK
[2025-10-12 22:25:25] 2025-10-13 02:24:51,794 | INFO     | cpuconsumptiontime: 46800 s
[2025-10-12 22:25:25] 2025-10-13 02:24:51,794 | INFO     | nevents: 400
[2025-10-12 22:25:25] 2025-10-13 02:24:51,794 | INFO     | neventsw: 0
[2025-10-12 22:25:25] 2025-10-13 02:24:51,794 | INFO     | pid: 25916
[2025-10-12 22:25:25] 2025-10-13 02:24:51,794 | INFO     | pgrp: 25916
[2025-10-12 22:25:25] 2025-10-13 02:24:51,795 | INFO     | corecount: 12
[2025-10-12 22:25:25] 2025-10-13 02:24:51,795 | INFO     | event service: False
[2025-10-12 22:25:25] 2025-10-13 02:24:51,795 | INFO     | sizes: {0: 2348857, 5: 2349119, 11: 2349175, 4333: 2375223, 4335: 2384221, 4338: 2384305, 4343: 2384627}
[2025-10-12 22:25:25] 2025-10-13 02:24:51,795 | INFO     | --------------------------------------------------
[2025-10-12 22:25:25] 2025-10-13 02:24:51,795 | INFO     | 
[2025-10-12 22:25:25] 2025-10-13 02:24:51,795 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 22:25:25] 2025-10-13 02:24:51,904 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 22:25:25] 2025-10-13 02:24:51,904 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 22:25:25] 2025-10-13 02:24:51,904 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 22:25:25] 2025-10-13 02:24:51,904 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 22:25:25] 2025-10-13 02:24:51,905 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 22:25:25] 2025-10-13 02:24:51,905 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 22:25:25] 2025-10-13 02:24:51,905 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 22:25:25] 2025-10-13 02:24:51,905 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 22:25:25] 2025-10-13 02:24:51,905 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 22:25:25] 2025-10-13 02:24:51,906 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 22:25:25] 2025-10-13 02:24:51,906 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 22:25:25] 2025-10-13 02:24:51,906 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 22:25:25] 2025-10-13 02:24:51,906 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 22:25:25] 2025-10-13 02:24:51,906 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 22:25:25] 2025-10-13 02:24:51,906 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 22:25:25] 2025-10-13 02:24:51,907 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 22:25:25] 2025-10-13 02:24:51,907 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 22:25:25] 2025-10-13 02:24:51,907 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 22:25:25] 2025-10-13 02:24:51,907 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 22:25:25] 2025-10-13 02:24:51,907 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 22:25:25] 2025-10-13 02:24:51,907 | INFO     | job 6840749815 has completed (purged errors)
[2025-10-12 22:25:25] 2025-10-13 02:24:51,907 | INFO     | overall cleanup function is called
[2025-10-12 22:25:25] 2025-10-13 02:24:52,915 | INFO     | --- collectZombieJob: --- 10, [25916]
[2025-10-12 22:25:25] 2025-10-13 02:24:52,916 | INFO     | zombie collector waiting for pid 25916
[2025-10-12 22:25:25] 2025-10-13 02:24:52,916 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 22:25:25] 2025-10-13 02:24:52,916 | INFO     | collected zombie processes
[2025-10-12 22:25:25] 2025-10-13 02:24:52,916 | INFO     | will attempt to kill all subprocesses of pid=25916
[2025-10-12 22:25:25] 2025-10-13 02:24:53,007 | INFO     | process IDs to be killed: [25916] (in reverse order)
[2025-10-12 22:25:25] 2025-10-13 02:24:53,058 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 22:25:25] 2025-10-13 02:24:53,058 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 22:25:25] 2025-10-13 02:24:53,062 | INFO     | did not find any defunct processes belonging to 25916
[2025-10-12 22:25:25] 2025-10-13 02:24:53,066 | INFO     | did not find any defunct processes belonging to 25916
[2025-10-12 22:25:25] 2025-10-13 02:24:53,066 | INFO     | ready for new job
[2025-10-12 22:25:25] 2025-10-13 02:24:53,066 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 22:25:25] 2025-10-13 02:24:53,067 | INFO     | ***************************************
[2025-10-12 22:25:25] 2025-10-13 02:24:53,067 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 22:25:25] 2025-10-13 02:24:53,068 | INFO     | ***************************************
[2025-10-12 22:25:25] 2025-10-13 02:24:53,068 | INFO     | 
[2025-10-12 22:25:25] 2025-10-13 02:24:53,068 | INFO     | architecture information:
[2025-10-12 22:25:25] 2025-10-13 02:24:53,069 | INFO     | executing command: cat /etc/os-release
[2025-10-12 22:25:25] 2025-10-13 02:24:53,083 | INFO     | cat /etc/os-release:
[2025-10-12 22:25:25] NAME="CentOS Linux"
[2025-10-12 22:25:25] VERSION="7 (Core)"
[2025-10-12 22:25:25] ID="centos"
[2025-10-12 22:25:25] ID_LIKE="rhel fedora"
[2025-10-12 22:25:25] VERSION_ID="7"
[2025-10-12 22:25:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 22:25:25] ANSI_COLOR="0;31"
[2025-10-12 22:25:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 22:25:25] HOME_URL="https://www.centos.org/"
[2025-10-12 22:25:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 22:25:25] 
[2025-10-12 22:25:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 22:25:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 22:25:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 22:25:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 22:25:25] 
[2025-10-12 22:25:25] 2025-10-13 02:24:53,083 | INFO     | ***************************************
[2025-10-12 22:25:25] 2025-10-13 02:24:53,586 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 22:25:25] 2025-10-13 02:24:53,603 | INFO     | sufficient remaining disk space (29479665664 B)
[2025-10-12 22:25:25] 2025-10-13 02:24:53,603 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 22:25:25] 2025-10-13 02:24:53,603 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 22:25:25] 2025-10-13 02:24:53,604 | INFO     | update_server=False
[2025-10-12 22:25:25] 2025-10-13 02:24:53,604 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 22:25:25] 2025-10-13 02:24:53,604 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:25:25] 2025-10-13 02:24:53,604 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 22:25:25] 2025-10-13 02:24:53,972 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 22:25:25] 2025-10-13 02:24:54,063 | INFO     | all payload control threads have been joined
[2025-10-12 22:25:25] 2025-10-13 02:24:54,574 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:25:25] 2025-10-13 02:24:54,574 | INFO     | aborting loop
[2025-10-12 22:25:25] 2025-10-13 02:24:54,609 | INFO     | [job] retrieve thread has finished
[2025-10-12 22:25:25] 2025-10-13 02:24:54,610 | INFO     | [job] queue monitor thread has finished
[2025-10-12 22:25:25] 2025-10-13 02:24:54,635 | INFO     | all data control threads have been joined
[2025-10-12 22:25:25] 2025-10-13 02:24:54,878 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 22:25:25] 2025-10-13 02:24:55,013 | INFO     | all job control threads have been joined
[2025-10-12 22:25:25] 2025-10-13 02:24:55,069 | INFO     | [payload] control thread has finished
[2025-10-12 22:25:25] 2025-10-13 02:24:55,315 | INFO     | [data] copytool_in thread has finished
[2025-10-12 22:25:25] 2025-10-13 02:24:55,338 | INFO     | [payload] failed_post thread has finished
[2025-10-12 22:25:25] 2025-10-13 02:24:55,580 | INFO     | [job] job monitor thread has finished
[2025-10-12 22:25:25] 2025-10-13 02:24:55,641 | INFO     | [data] control thread has finished
[2025-10-12 22:25:25] 2025-10-13 02:24:55,687 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 22:25:25] 2025-10-13 02:24:55,694 | INFO     | [job] validate thread has finished
[2025-10-12 22:25:25] 2025-10-13 02:24:55,814 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 22:25:25] 2025-10-13 02:24:55,865 | INFO     | [payload] validate_post thread has finished
[2025-10-12 22:25:25] 2025-10-13 02:24:55,977 | INFO     | [data] copytool_out thread has finished
[2025-10-12 22:25:25] 2025-10-13 02:24:56,018 | INFO     | [job] control thread has finished
[2025-10-12 22:25:25] 2025-10-13 02:24:57,610 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 22:25:25] 2025-10-13 02:25:03,924 | INFO     | job.realtimelogging is not enabled
[2025-10-12 22:25:25] 2025-10-13 02:25:04,929 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 22:25:25] 2025-10-13 02:25:19,130 | INFO     | [monitor] cgroup control has ended
[2025-10-12 22:25:25] 2025-10-13 02:25:19,857 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140287835436864)>', '<ExcThread(monitor, started 140287171090176)>']
[2025-10-12 22:25:25] 2025-10-13 02:25:23,971 | INFO     | PID=19466 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 22:25:25] 2025-10-13 02:25:23,972 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 22:25:25] 2025-10-13 02:25:23,972 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 22:25:25] 2025-10-13 02:25:23,972 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 22:25:25] 2025-10-13 02:25:23,972 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 22:25:25] 2025-10-13 02:25:23,972 | INFO     | [monitor] control thread has ended
[2025-10-12 22:25:25] 2025-10-13 02:25:24,860 | INFO     | all workflow threads have been joined
[2025-10-12 22:25:25] 2025-10-13 02:25:24,860 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 22:25:25] 2025-10-13 02:25:24,860 | INFO     | traces error code: 0
[2025-10-12 22:25:25] 2025-10-13 02:25:24,860 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 22:25:25] 2025-10-13 02:25:24,951 [wrapper] ==== pilot stdout END ====
[2025-10-12 22:25:25] 2025-10-13 02:25:24,955 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 22:25:25] 2025-10-13 02:25:24,958 [wrapper] pilotpid: 19466
[2025-10-12 22:25:25] 2025-10-13 02:25:24,962 [wrapper] Pilot exit status: 0
[2025-10-12 22:25:25] 2025-10-13 02:25:24,977 [wrapper] pandaids: 6840749815
[2025-10-12 22:25:25] 2025-10-13 02:25:25,018 [wrapper] cleanup supervisor_pilot 12458 19467
[2025-10-12 22:25:25] 2025-10-13 02:25:25,022 [wrapper] Test setup, not cleaning
[2025-10-12 22:25:25] 2025-10-13 02:25:25,026 [wrapper] apfmon messages muted
[2025-10-12 22:25:25] 2025-10-13 02:25:25,030 [wrapper] ==== wrapper stdout END ====
[2025-10-12 22:25:25] 2025-10-13 02:25:25,034 [wrapper] ==== wrapper stderr END ====
[2025-10-12 22:25:25]  *** Error codes and diagnostics ***
[2025-10-12 22:25:25]     "exeErrorCode": 0,
[2025-10-12 22:25:25]     "exeErrorDiag": "",
[2025-10-12 22:25:25]     "pilotErrorCode": 0,
[2025-10-12 22:25:25]     "pilotErrorDiag": "",
[2025-10-12 22:25:25]  *** Listing of results directory ***
[2025-10-12 22:25:25] total 414512
[2025-10-12 22:25:25] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 16:55 pilot3.tar.gz
[2025-10-12 22:25:25] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 16:56 queuedata.json
[2025-10-12 22:25:25] -rwx------ 1 boincer umatlas     36292 Oct 12 16:57 runpilot2-wrapper.sh
[2025-10-12 22:25:25] -rw-r--r-- 1 boincer umatlas       100 Oct 12 21:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 22:25:25] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 21:11 run_atlas
[2025-10-12 22:25:25] -rw-r--r-- 1 boincer umatlas       105 Oct 12 21:11 job.xml
[2025-10-12 22:25:25] -rw-r--r-- 2 boincer umatlas 223462713 Oct 12 21:11 EVNT.46676267._004759.pool.root.1
[2025-10-12 22:25:25] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 21:11 start_atlas.sh
[2025-10-12 22:25:25] drwxrwx--x 2 boincer umatlas      4096 Oct 12 21:11 shared
[2025-10-12 22:25:25] -rw-r--r-- 2 boincer umatlas    569681 Oct 12 21:11 input.tar.gz
[2025-10-12 22:25:25] -rw-r--r-- 1 boincer umatlas         0 Oct 12 21:11 boinc_lockfile
[2025-10-12 22:25:25] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 21:11 pandaJob.out
[2025-10-12 22:25:25] -rw------- 1 boincer umatlas    975603 Oct 12 21:12 agis_schedconf.cvmfs.json
[2025-10-12 22:25:25] -rw------- 1 boincer umatlas   1560580 Oct 12 21:12 agis_ddmendpoints.agis.ALL.json
[2025-10-12 22:25:25] drwx------ 5 boincer umatlas      4096 Oct 12 21:12 pilot3
[2025-10-12 22:25:25] -rw-r--r-- 1 boincer umatlas      5952 Oct 12 22:19 init_data.xml
[2025-10-12 22:25:25] -rw------- 1 boincer umatlas 195042895 Oct 12 22:24 HITS.46676269._089243.pool.root.1
[2025-10-12 22:25:25] -rw-r--r-- 1 boincer umatlas       529 Oct 12 22:24 boinc_task_state.xml
[2025-10-12 22:25:25] -rw------- 1 boincer umatlas      1049 Oct 12 22:24 memory_monitor_summary.json
[2025-10-12 22:25:25] -rw------- 1 boincer umatlas    395509 Oct 12 22:24 log.46676269._089243.job.log.tgz.1
[2025-10-12 22:25:25] -rw------- 1 boincer umatlas      7852 Oct 12 22:24 heartbeat.json
[2025-10-12 22:25:25] -rw-r--r-- 1 boincer umatlas        27 Oct 12 22:25 wrapper_checkpoint.txt
[2025-10-12 22:25:25] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 22:25 boinc_mmap_file
[2025-10-12 22:25:25] -rw------- 1 boincer umatlas        95 Oct 12 22:25 pilot_heartbeat.json
[2025-10-12 22:25:25] -rw------- 1 boincer umatlas      4818 Oct 12 22:25 pilotlog.txt
[2025-10-12 22:25:25] -rw------- 1 boincer umatlas    634687 Oct 12 22:25 log.46676269._089243.job.log.1
[2025-10-12 22:25:25] -rw------- 1 boincer umatlas       357 Oct 12 22:25 output.list
[2025-10-12 22:25:25] -rw-r--r-- 1 boincer umatlas       620 Oct 12 22:25 runtime_log
[2025-10-12 22:25:25] -rw------- 1 boincer umatlas   1044480 Oct 12 22:25 result.tar.gz
[2025-10-12 22:25:25] -rw-r--r-- 1 boincer umatlas      8700 Oct 12 22:25 runtime_log.err
[2025-10-12 22:25:25] -rw------- 1 boincer umatlas       658 Oct 12 22:25 MnqMDmuIIS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmuWlNDmrqNTzn.diag
[2025-10-12 22:25:25] -rw-r--r-- 1 boincer umatlas     22362 Oct 12 22:25 stderr.txt
[2025-10-12 22:25:25] HITS file was successfully produced:
[2025-10-12 22:25:25] -rw------- 1 boincer umatlas 195042895 Oct 12 22:24 shared/HITS.pool.root.1
[2025-10-12 22:25:25]  *** Contents of shared directory: ***
[2025-10-12 22:25:25] total 410300
[2025-10-12 22:25:25] -rw-r--r-- 2 boincer umatlas 223462713 Oct 12 21:11 ATLAS.root_0
[2025-10-12 22:25:25] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 21:11 start_atlas.sh
[2025-10-12 22:25:25] -rw-r--r-- 2 boincer umatlas    569681 Oct 12 21:11 input.tar.gz
[2025-10-12 22:25:25] -rw------- 1 boincer umatlas 195042895 Oct 12 22:24 HITS.pool.root.1
[2025-10-12 22:25:25] -rw------- 1 boincer umatlas   1044480 Oct 12 22:25 result.tar.gz
22:25:26 (15737): run_atlas exited; CPU time 46776.653514
22:25:26 (15737): called boinc_finish(0)

</stderr_txt>
]]>

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