Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:59:09 (2537004): wrapper (7.7.26015): starting
16:59:09 (2537004): wrapper: running run_atlas (--nthreads 6)
[2025-10-13 16:59:09] Arguments: --nthreads 6
[2025-10-13 16:59:09] Threads: 6
[2025-10-13 16:59:09] Checking for CVMFS
[2025-10-13 16:59:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 16:59:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 16:59:09] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 16:59:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 16:59:10] 2.11.5.0 3102357 4993 93996 151653 1 187 42877710 52428801 863 130560 0 11328716 99.997 176558 15 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.35.143:3126 1
[2025-10-13 16:59:10] CVMFS is ok
[2025-10-13 16:59:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 16:59:10] Checking for apptainer binary...
[2025-10-13 16:59:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 16:59:10] Running /usr/bin/apptainer --version
[2025-10-13 16:59:10] apptainer version 1.3.6-1.el9
[2025-10-13 16:59:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 16:59:10] testio002
[2025-10-13 16:59:10] apptainer works
[2025-10-13 16:59:10] Set ATHENA_PROC_NUMBER=6
[2025-10-13 16:59:10] Set ATHENA_CORE_NUMBER=6
[2025-10-13 16:59:10] Starting ATLAS job with PandaID=6840536916
[2025-10-13 16:59:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 18:13:29]  *** The last 200 lines of the pilot log: ***
[2025-10-13 18:13:29]  is_altstaged=None
[2025-10-13 18:13:29]  is_tar=False
[2025-10-13 18:13:29]  lfn=log.46676269._086335.job.log.tgz.1
[2025-10-13 18:13:29]  mtime=0
[2025-10-13 18:13:29]  protocol_id=None
[2025-10-13 18:13:29]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-13 18:13:29]  replicas=None
[2025-10-13 18:13:29]  scope=mc23_13p6TeV
[2025-10-13 18:13:29]  status=None
[2025-10-13 18:13:29]  status_code=0
[2025-10-13 18:13:29]  storage_token=
[2025-10-13 18:13:29]  surl=/var/lib/boinc/slots/2/PanDA_Pilot-6840536916/log.46676269._086335.job.log.tgz.1
[2025-10-13 18:13:29]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ab/81/log.46676269._086335.job.log.tgz.1
[2025-10-13 18:13:29]  workdir=None
[2025-10-13 18:13:29] ]
[2025-10-13 18:13:29] 2025-10-13 09:12:33,011 | INFO     | transferring file log.46676269._086335.job.log.tgz.1 from /var/lib/boinc/slots/2/PanDA_Pilot-6840536916/log.46676269._086335.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-13 18:13:29] 2025-10-13 09:12:33,011 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/2/PanDA_Pilot-6840536916/log.46676269._086335.job.log.tgz.1 /var/lib/boinc/slots/2/log.46676269._086335.job
[2025-10-13 18:13:29] 2025-10-13 09:12:33,017 | INFO     | adding to output.list: log.46676269._086335.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ab/81/log.46676269._086335.job.log.tg
[2025-10-13 18:13:29] 2025-10-13 09:12:33,018 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 18:13:29] 2025-10-13 09:12:33,018 | INFO     | summary of transferred files:
[2025-10-13 18:13:29] 2025-10-13 09:12:33,018 | INFO     |  -- lfn=log.46676269._086335.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 18:13:29] 2025-10-13 09:12:33,018 | INFO     | stage-out finished correctly
[2025-10-13 18:13:29] 2025-10-13 09:12:33,373 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 18:13:29] 2025-10-13 09:12:33,415 | INFO     | job 6840536916 has state=finished
[2025-10-13 18:13:29] 2025-10-13 09:12:33,416 | INFO     | preparing for final server update for job 6840536916 in state='finished'
[2025-10-13 18:13:29] 2025-10-13 09:12:33,416 | INFO     | this job has now completed (state=finished)
[2025-10-13 18:13:29] 2025-10-13 09:12:33,416 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 18:13:29] 2025-10-13 09:12:33,416 | INFO     | log transfer has been attempted: DONE
[2025-10-13 18:13:29] 2025-10-13 09:12:33,416 | INFO     | job 6840536916 has finished - writing final server update
[2025-10-13 18:13:29] 2025-10-13 09:12:33,416 | INFO     | total number of processed events: 400 (read)
[2025-10-13 18:13:29] 2025-10-13 09:12:33,416 | INFO     | executing command: lscpu
[2025-10-13 18:13:29] 2025-10-13 09:12:33,423 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 18:13:29] 2025-10-13 09:12:34,434 | INFO     | monitor loop #334: job 0:6840536916 is in state 'finished'
[2025-10-13 18:13:29] 2025-10-13 09:12:34,434 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 18:13:29] 2025-10-13 09:12:34,808 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-13 18:13:29] 2025-10-13 09:12:34,809 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 4495.3313125
[2025-10-13 18:13:29] 2025-10-13 09:12:34,810 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6840536916/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 18:13:29] 2025-10-13 09:12:34,810 | INFO     | extracted standard info from prmon json
[2025-10-13 18:13:29] 2025-10-13 09:12:34,810 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 18:13:29] 2025-10-13 09:12:34,810 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 18:13:29] 2025-10-13 09:12:34,811 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 18:13:29] 2025-10-13 09:12:34,811 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 18:13:29] 2025-10-13 09:12:34,811 | INFO     | fitting pss+swap vs Time
[2025-10-13 18:13:29] 2025-10-13 09:12:34,811 | INFO     | sum of square deviations: 85136480.0
[2025-10-13 18:13:29] 2025-10-13 09:12:34,811 | INFO     | sum of deviations: 625824864.0
[2025-10-13 18:13:29] 2025-10-13 09:12:34,811 | INFO     | mean x: 1760344630.0
[2025-10-13 18:13:29] 2025-10-13 09:12:34,811 | INFO     | mean y: 2520534.3846153845
[2025-10-13 18:13:29] 2025-10-13 09:12:34,811 | INFO     | -- intersect: -12937495762.540985
[2025-10-13 18:13:29] 2025-10-13 09:12:34,811 | INFO     | intersect: -12937495762.540985
[2025-10-13 18:13:29] 2025-10-13 09:12:34,812 | INFO     | chi2: 0.034963163593611526
[2025-10-13 18:13:29] 2025-10-13 09:12:34,812 | INFO     | -- intersect: -12937495762.540985
[2025-10-13 18:13:29] 2025-10-13 09:12:34,812 | INFO     | current memory leak: 7.35 B/s (using 65 data points, chi2=0.03)
[2025-10-13 18:13:29] 2025-10-13 09:12:34,812 | INFO     | could have reported an average CPU frequency of 4308 MHz (6 samples)
[2025-10-13 18:13:29] 2025-10-13 09:12:34,812 | INFO     | ..............................
[2025-10-13 18:13:29] 2025-10-13 09:12:34,812 | INFO     | . Timing measurements:
[2025-10-13 18:13:29] 2025-10-13 09:12:34,812 | INFO     | . get job = 0 s
[2025-10-13 18:13:29] 2025-10-13 09:12:34,812 | INFO     | . initial setup = 4 s
[2025-10-13 18:13:29] 2025-10-13 09:12:34,812 | INFO     | . payload setup = 1 s
[2025-10-13 18:13:29] 2025-10-13 09:12:34,812 | INFO     | . stage-in = 0 s
[2025-10-13 18:13:29] 2025-10-13 09:12:34,812 | INFO     | . payload execution = 4378 s
[2025-10-13 18:13:29] 2025-10-13 09:12:34,812 | INFO     | . stage-out = 0 s
[2025-10-13 18:13:29] 2025-10-13 09:12:34,812 | INFO     | . log creation = 0 s
[2025-10-13 18:13:29] 2025-10-13 09:12:34,812 | INFO     | ..............................
[2025-10-13 18:13:29] 2025-10-13 09:12:34,914 | INFO     | time since job start (4397s) is within the limit (172800.0s)
[2025-10-13 18:13:29] 2025-10-13 09:12:35,212 | INFO     | 
[2025-10-13 18:13:29] 2025-10-13 09:12:35,212 | INFO     | job summary report
[2025-10-13 18:13:29] 2025-10-13 09:12:35,212 | INFO     | --------------------------------------------------
[2025-10-13 18:13:29] 2025-10-13 09:12:35,212 | INFO     | PanDA job id: 6840536916
[2025-10-13 18:13:29] 2025-10-13 09:12:35,212 | INFO     | task id: 46676269
[2025-10-13 18:13:29] 2025-10-13 09:12:35,212 | INFO     | errors: (none)
[2025-10-13 18:13:29] 2025-10-13 09:12:35,212 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 18:13:29] 2025-10-13 09:12:35,212 | INFO     | pilot state: finished 
[2025-10-13 18:13:29] 2025-10-13 09:12:35,212 | INFO     | transexitcode: 0
[2025-10-13 18:13:29] 2025-10-13 09:12:35,212 | INFO     | exeerrorcode: 0
[2025-10-13 18:13:29] 2025-10-13 09:12:35,212 | INFO     | exeerrordiag: 
[2025-10-13 18:13:29] 2025-10-13 09:12:35,212 | INFO     | exitcode: 0
[2025-10-13 18:13:29] 2025-10-13 09:12:35,212 | INFO     | exitmsg: OK
[2025-10-13 18:13:29] 2025-10-13 09:12:35,212 | INFO     | cpuconsumptiontime: 23903 s
[2025-10-13 18:13:29] 2025-10-13 09:12:35,213 | INFO     | nevents: 400
[2025-10-13 18:13:29] 2025-10-13 09:12:35,213 | INFO     | neventsw: 0
[2025-10-13 18:13:29] 2025-10-13 09:12:35,213 | INFO     | pid: 2547633
[2025-10-13 18:13:29] 2025-10-13 09:12:35,213 | INFO     | pgrp: 2547633
[2025-10-13 18:13:29] 2025-10-13 09:12:35,213 | INFO     | corecount: 6
[2025-10-13 18:13:29] 2025-10-13 09:12:35,213 | INFO     | event service: False
[2025-10-13 18:13:29] 2025-10-13 09:12:35,213 | INFO     | sizes: {0: 2348857, 1: 2349119, 11: 2349147, 4383: 2375331, 4384: 2384385, 4386: 2384523}
[2025-10-13 18:13:29] 2025-10-13 09:12:35,213 | INFO     | --------------------------------------------------
[2025-10-13 18:13:29] 2025-10-13 09:12:35,213 | INFO     | 
[2025-10-13 18:13:29] 2025-10-13 09:12:35,213 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-10-13 18:13:29] 2025-10-13 09:12:35,220 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 18:13:29] 2025-10-13 09:12:35,220 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 18:13:29] 2025-10-13 09:12:35,220 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 18:13:29] 2025-10-13 09:12:35,220 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 18:13:29] 2025-10-13 09:12:35,220 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 18:13:29] 2025-10-13 09:12:35,220 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 18:13:29] 2025-10-13 09:12:35,220 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 18:13:29] 2025-10-13 09:12:35,220 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 18:13:29] 2025-10-13 09:12:35,220 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 18:13:29] 2025-10-13 09:12:35,220 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 18:13:29] 2025-10-13 09:12:35,220 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 18:13:29] 2025-10-13 09:12:35,220 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 18:13:29] 2025-10-13 09:12:35,220 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 18:13:29] 2025-10-13 09:12:35,220 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 18:13:29] 2025-10-13 09:12:35,220 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 18:13:29] 2025-10-13 09:12:35,220 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 18:13:29] 2025-10-13 09:12:35,220 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 18:13:29] 2025-10-13 09:12:35,220 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 18:13:29] 2025-10-13 09:12:35,221 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 18:13:29] 2025-10-13 09:12:35,221 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 18:13:29] 2025-10-13 09:12:35,221 | INFO     | job 6840536916 has completed (purged errors)
[2025-10-13 18:13:29] 2025-10-13 09:12:35,221 | INFO     | overall cleanup function is called
[2025-10-13 18:13:29] 2025-10-13 09:12:36,226 | INFO     | --- collectZombieJob: --- 10, [2547633]
[2025-10-13 18:13:29] 2025-10-13 09:12:36,226 | INFO     | zombie collector waiting for pid 2547633
[2025-10-13 18:13:29] 2025-10-13 09:12:36,226 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 18:13:29] 2025-10-13 09:12:36,226 | INFO     | collected zombie processes
[2025-10-13 18:13:29] 2025-10-13 09:12:36,226 | INFO     | will attempt to kill all subprocesses of pid=2547633
[2025-10-13 18:13:29] 2025-10-13 09:12:36,260 | INFO     | process IDs to be killed: [2547633] (in reverse order)
[2025-10-13 18:13:29] 2025-10-13 09:12:36,275 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 18:13:29] 2025-10-13 09:12:36,276 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 18:13:29] 2025-10-13 09:12:36,277 | INFO     | did not find any defunct processes belonging to 2547633
[2025-10-13 18:13:29] 2025-10-13 09:12:36,278 | INFO     | did not find any defunct processes belonging to 2547633
[2025-10-13 18:13:29] 2025-10-13 09:12:36,278 | INFO     | ready for new job
[2025-10-13 18:13:29] 2025-10-13 09:12:36,278 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 18:13:29] 2025-10-13 09:12:36,279 | INFO     | ***************************************
[2025-10-13 18:13:29] 2025-10-13 09:12:36,279 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 18:13:29] 2025-10-13 09:12:36,279 | INFO     | ***************************************
[2025-10-13 18:13:29] 2025-10-13 09:12:36,279 | INFO     | 
[2025-10-13 18:13:29] 2025-10-13 09:12:36,279 | INFO     | architecture information:
[2025-10-13 18:13:29] 2025-10-13 09:12:36,279 | INFO     | executing command: cat /etc/os-release
[2025-10-13 18:13:29] 2025-10-13 09:12:36,283 | INFO     | cat /etc/os-release:
[2025-10-13 18:13:29] NAME="CentOS Linux"
[2025-10-13 18:13:29] VERSION="7 (Core)"
[2025-10-13 18:13:29] ID="centos"
[2025-10-13 18:13:29] ID_LIKE="rhel fedora"
[2025-10-13 18:13:29] VERSION_ID="7"
[2025-10-13 18:13:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 18:13:29] ANSI_COLOR="0;31"
[2025-10-13 18:13:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 18:13:29] HOME_URL="https://www.centos.org/"
[2025-10-13 18:13:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 18:13:29] 
[2025-10-13 18:13:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 18:13:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 18:13:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 18:13:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 18:13:29] 
[2025-10-13 18:13:29] 2025-10-13 09:12:36,284 | INFO     | ***************************************
[2025-10-13 18:13:29] 2025-10-13 09:12:36,786 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-10-13 18:13:29] 2025-10-13 09:12:36,792 | INFO     | sufficient remaining disk space (301093355520 B)
[2025-10-13 18:13:29] 2025-10-13 09:12:36,792 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 18:13:29] 2025-10-13 09:12:36,793 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 18:13:29] 2025-10-13 09:12:36,793 | INFO     | update_server=False
[2025-10-13 18:13:29] 2025-10-13 09:12:36,793 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 18:13:29] 2025-10-13 09:12:36,793 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 18:13:29] 2025-10-13 09:12:36,793 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-13 18:13:29] 2025-10-13 09:12:36,793 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 18:13:29] 2025-10-13 09:12:36,793 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 18:13:29] 2025-10-13 09:12:36,793 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 18:13:29] 2025-10-13 09:12:36,793 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 18:13:29] 2025-10-13 09:12:36,907 | INFO     | all job control threads have been joined
[2025-10-13 18:13:29] 2025-10-13 09:12:36,937 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 18:13:29] 2025-10-13 09:12:36,937 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 18:13:29] 2025-10-13 09:12:36,937 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 18:13:29] 2025-10-13 09:12:36,937 | INFO     | will abort loop
[2025-10-13 18:13:29] 2025-10-13 09:12:37,635 | INFO     | all data control threads have been joined
[2025-10-13 18:13:29] 2025-10-13 09:12:37,755 | INFO     | all payload control threads have been joined
[2025-10-13 18:13:29] 2025-10-13 09:12:37,797 | INFO     | [job] retrieve thread has finished
[2025-10-13 18:13:29] 2025-10-13 09:12:37,798 | INFO     | [job] queue monitor thread has finished
[2025-10-13 18:13:29] 2025-10-13 09:12:37,804 | INFO     | [job] validate thread has finished
[2025-10-13 18:13:29] 2025-10-13 09:12:37,904 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 18:13:29] 2025-10-13 09:12:37,906 | INFO     | [data] copytool_in thread has finished
[2025-10-13 18:13:29] 2025-10-13 09:12:37,912 | INFO     | [job] control thread has finished
[2025-10-13 18:13:29] 2025-10-13 09:12:37,917 | INFO     | [payload] failed_post thread has finished
[2025-10-13 18:13:29] 2025-10-13 09:12:37,942 | INFO     | [job] job monitor thread has finished
[2025-10-13 18:13:29] 2025-10-13 09:12:37,952 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 18:13:29] 2025-10-13 09:12:38,210 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 18:13:29] 2025-10-13 09:12:38,269 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 18:13:29] 2025-10-13 09:12:38,561 | INFO     | [payload] validate_post thread has finished
[2025-10-13 18:13:29] 2025-10-13 09:12:38,640 | INFO     | [data] control thread has finished
[2025-10-13 18:13:29] 2025-10-13 09:12:38,760 | INFO     | [payload] control thread has finished
[2025-10-13 18:13:29] 2025-10-13 09:12:38,798 | INFO     | [data] copytool_out thread has finished
[2025-10-13 18:13:29] 2025-10-13 09:12:39,420 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 18:13:29] 2025-10-13 09:12:43,425 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 18:13:29] 2025-10-13 09:13:23,819 | INFO     | [monitor] cgroup control has ended
[2025-10-13 18:13:29] 2025-10-13 09:13:24,746 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140411916703552)>', '<ExcThread(monitor, started 140411062445824)>']
[2025-10-13 18:13:29] 2025-10-13 09:13:25,028 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 18:13:29] 2025-10-13 09:13:25,028 | INFO     | [monitor] control thread has ended
[2025-10-13 18:13:29] 2025-10-13 09:13:29,771 | INFO     | all workflow threads have been joined
[2025-10-13 18:13:29] 2025-10-13 09:13:29,771 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 18:13:29] 2025-10-13 09:13:29,771 | INFO     | traces error code: 0
[2025-10-13 18:13:29] 2025-10-13 09:13:29,771 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 18:13:29] 2025-10-13 09:13:29,823 [wrapper] ==== pilot stdout END ====
[2025-10-13 18:13:29] 2025-10-13 09:13:29,824 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 18:13:29] 2025-10-13 09:13:29,825 [wrapper] pilotpid: 2540816
[2025-10-13 18:13:29] 2025-10-13 09:13:29,826 [wrapper] Pilot exit status: 0
[2025-10-13 18:13:29] 2025-10-13 09:13:29,828 [wrapper] pandaids: 6840536916
[2025-10-13 18:13:29] 2025-10-13 09:13:29,836 [wrapper] cleanup supervisor_pilot 2559656 2540817
[2025-10-13 18:13:29] 2025-10-13 09:13:29,837 [wrapper] Test setup, not cleaning
[2025-10-13 18:13:29] 2025-10-13 09:13:29,838 [wrapper] apfmon messages muted
[2025-10-13 18:13:29] 2025-10-13 09:13:29,838 [wrapper] ==== wrapper stdout END ====
[2025-10-13 18:13:29] 2025-10-13 09:13:29,839 [wrapper] ==== wrapper stderr END ====
[2025-10-13 18:13:29]  *** Error codes and diagnostics ***
[2025-10-13 18:13:29]     "exeErrorCode": 0,
[2025-10-13 18:13:29]     "exeErrorDiag": "",
[2025-10-13 18:13:29]     "pilotErrorCode": 0,
[2025-10-13 18:13:29]     "pilotErrorDiag": "",
[2025-10-13 18:13:29]  *** Listing of results directory ***
[2025-10-13 18:13:29] total 412692
[2025-10-13 18:13:29] -rw-r--r--. 1 boinc boinc    557409 Oct 13 03:20 pilot3.tar.gz
[2025-10-13 18:13:29] -rw-r--r--. 1 boinc boinc      5112 Oct 13 03:37 queuedata.json
[2025-10-13 18:13:29] -rwx------. 1 boinc boinc     36292 Oct 13 03:38 runpilot2-wrapper.sh
[2025-10-13 18:13:29] -rw-r--r--. 1 boinc boinc       100 Oct 13 16:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 18:13:29] -rwxr-xr-x. 1 boinc boinc      7986 Oct 13 16:59 run_atlas
[2025-10-13 18:13:29] -rw-r--r--. 1 boinc boinc       105 Oct 13 16:59 job.xml
[2025-10-13 18:13:29] -rw-r--r--. 2 boinc boinc     15120 Oct 13 16:59 start_atlas.sh
[2025-10-13 18:13:29] drwxrwx--x. 2 boinc boinc        68 Oct 13 16:59 shared
[2025-10-13 18:13:29] -rw-r--r--. 2 boinc boinc    569685 Oct 13 16:59 input.tar.gz
[2025-10-13 18:13:29] -rw-r--r--. 1 boinc boinc      9628 Oct 13 16:59 init_data.xml
[2025-10-13 18:13:29] -rw-r--r--. 2 boinc boinc 220131587 Oct 13 16:59 EVNT.46676267._004413.pool.root.1
[2025-10-13 18:13:29] -rw-r--r--. 1 boinc boinc         0 Oct 13 16:59 boinc_lockfile
[2025-10-13 18:13:29] -rw-r--r--. 1 boinc boinc      2550 Oct 13 16:59 pandaJob.out
[2025-10-13 18:13:29] -rw-------. 1 boinc boinc    972849 Oct 13 16:59 agis_schedconf.cvmfs.json
[2025-10-13 18:13:29] -rw-------. 1 boinc boinc   1560580 Oct 13 16:59 agis_ddmendpoints.agis.ALL.json
[2025-10-13 18:13:29] drwx------. 5 boinc boinc      4096 Oct 13 16:59 pilot3
[2025-10-13 18:13:29] -rw-------. 1 boinc boinc        95 Oct 13 18:11 pilot_heartbeat.json
[2025-10-13 18:13:29] -rw-r--r--. 1 boinc boinc       529 Oct 13 18:12 boinc_task_state.xml
[2025-10-13 18:13:29] -rw-------. 1 boinc boinc 196684172 Oct 13 18:12 HITS.46676269._086335.pool.root.1
[2025-10-13 18:13:29] -rw-------. 1 boinc boinc      1027 Oct 13 18:12 memory_monitor_summary.json
[2025-10-13 18:13:29] -rw-------. 1 boinc boinc    284764 Oct 13 18:12 log.46676269._086335.job.log.tgz.1
[2025-10-13 18:13:29] -rw-------. 1 boinc boinc      7791 Oct 13 18:12 heartbeat.json
[2025-10-13 18:13:29] -rw-r--r--. 1 boinc boinc      8192 Oct 13 18:13 boinc_mmap_file
[2025-10-13 18:13:29] -rw-r--r--. 1 boinc boinc        27 Oct 13 18:13 wrapper_checkpoint.txt
[2025-10-13 18:13:29] -rw-------. 1 boinc boinc      4739 Oct 13 18:13 pilotlog.txt
[2025-10-13 18:13:29] -rw-------. 1 boinc boinc    662497 Oct 13 18:13 log.46676269._086335.job.log.1
[2025-10-13 18:13:29] -rw-------. 1 boinc boinc       357 Oct 13 18:13 output.list
[2025-10-13 18:13:29] -rw-r--r--. 1 boinc boinc       620 Oct 13 18:13 runtime_log
[2025-10-13 18:13:29] -rw-------. 1 boinc boinc    962560 Oct 13 18:13 result.tar.gz
[2025-10-13 18:13:29] -rw-------. 1 boinc boinc       642 Oct 13 18:13 s07KDmT8FS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmK6kNDmP0zIDn.diag
[2025-10-13 18:13:29] -rw-r--r--. 1 boinc boinc      8661 Oct 13 18:13 runtime_log.err
[2025-10-13 18:13:29] -rw-r--r--. 1 boinc boinc     21049 Oct 13 18:13 stderr.txt
[2025-10-13 18:13:29] HITS file was successfully produced:
[2025-10-13 18:13:29] -rw-------. 1 boinc boinc 196684172 Oct 13 18:12 shared/HITS.pool.root.1
[2025-10-13 18:13:29]  *** Contents of shared directory: ***
[2025-10-13 18:13:29] total 408568
[2025-10-13 18:13:29] -rw-r--r--. 2 boinc boinc     15120 Oct 13 16:59 start_atlas.sh
[2025-10-13 18:13:29] -rw-r--r--. 2 boinc boinc    569685 Oct 13 16:59 input.tar.gz
[2025-10-13 18:13:29] -rw-r--r--. 2 boinc boinc 220131587 Oct 13 16:59 ATLAS.root_0
[2025-10-13 18:13:29] -rw-------. 1 boinc boinc 196684172 Oct 13 18:12 HITS.pool.root.1
[2025-10-13 18:13:29] -rw-------. 1 boinc boinc    962560 Oct 13 18:13 result.tar.gz
18:13:31 (2537004): run_atlas exited; CPU time 23921.561902
18:13:31 (2537004): called boinc_finish(0)

</stderr_txt>
]]>

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