Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:03:01 (858175): wrapper (7.7.26015): starting
21:03:01 (858175): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 21:03:01] Arguments: --nthreads 8
[2025-10-12 21:03:01] Threads: 8
[2025-10-12 21:03:01] Checking for CVMFS
[2025-10-12 21:03:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 21:03:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 21:03:01] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 21:03:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 21:03:02] 2.13.2.0 342865 28016 108976 151642 1 542 26728705 40960001 35598 16776704 0 209308694 99.775 117251411 46640 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 21:03:02] CVMFS is ok
[2025-10-12 21:03:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 21:03:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 21:03:02] Further information can be found at the LHC@home message board.
[2025-10-12 21:03:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 21:03:02] Checking for apptainer binary...
[2025-10-12 21:03:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 21:03:02] Running /usr/bin/apptainer --version
[2025-10-12 21:03:02] apptainer version 1.4.3-1.el9
[2025-10-12 21:03:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 21:03:02] c-208-36.aglt2.org
[2025-10-12 21:03:02] apptainer works
[2025-10-12 21:03:02] Set ATHENA_PROC_NUMBER=8
[2025-10-12 21:03:02] Set ATHENA_CORE_NUMBER=8
[2025-10-12 21:03:03] Starting ATLAS job with PandaID=6840749726
[2025-10-12 21:03:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 23:03:49]  *** The last 200 lines of the pilot log: ***
[2025-10-12 23:03:49] 2025-10-13 02:33:16,701 | INFO     | monitor loop #370: job 0:6840749726 is in state 'finished'
[2025-10-12 23:03:49] 2025-10-13 02:33:16,702 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 23:03:49] 2025-10-13 02:33:17,608 | INFO     | time since job start (5388s) is within the limit (172800.0s)
[2025-10-12 23:03:49] 2025-10-13 02:33:19,210 | INFO     | monitor loop #371: job 0:6840749726 is in state 'finished'
[2025-10-12 23:03:49] 2025-10-13 02:33:19,211 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 23:03:49] 2025-10-13 02:33:19,615 | INFO     | time since job start (5390s) is within the limit (172800.0s)
[2025-10-12 23:03:49] 2025-10-13 02:33:21,725 | INFO     | monitor loop #372: job 0:6840749726 is in state 'finished'
[2025-10-12 23:03:49] 2025-10-13 02:33:21,726 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 23:03:49] 2025-10-13 02:33:23,821 | INFO     | PID=862377 has CPU usage=9.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 23:03:49] 2025-10-13 02:33:23,821 | INFO     | .. there are 37 such processes running
[2025-10-12 23:03:49] 2025-10-13 02:33:24,230 | INFO     | monitor loop #373: job 0:6840749726 is in state 'finished'
[2025-10-12 23:03:49] 2025-10-13 02:33:24,231 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 23:03:49] 2025-10-13 02:33:24,823 | INFO     | time since job start (5395s) is within the limit (172800.0s)
[2025-10-12 23:03:49] 2025-10-13 02:33:26,409 [wrapper] supervise_pilot (15 min periods counter: 7)
[2025-10-12 23:03:49] 2025-10-13 02:33:26,737 | INFO     | monitor loop #374: job 0:6840749726 is in state 'finished'
[2025-10-12 23:03:49] 2025-10-13 02:33:26,738 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 23:03:49] 2025-10-13 02:33:26,830 | INFO     | time since job start (5397s) is within the limit (172800.0s)
[2025-10-12 23:03:49] 2025-10-13 02:33:28,837 | INFO     | time since job start (5399s) is within the limit (172800.0s)
[2025-10-12 23:03:49] 2025-10-13 02:33:29,242 | INFO     | monitor loop #375: job 0:6840749726 is in state 'finished'
[2025-10-12 23:03:49] 2025-10-13 02:33:29,243 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 23:03:49] 2025-10-13 02:33:30,844 | INFO     | time since job start (5401s) is within the limit (172800.0s)
[2025-10-12 23:03:49] 2025-10-13 02:33:31,747 | INFO     | monitor loop #376: job 0:6840749726 is in state 'finished'
[2025-10-12 23:03:49] 2025-10-13 02:33:31,748 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 23:03:49] 2025-10-13 02:33:32,853 | INFO     | time since job start (5403s) is within the limit (172800.0s)
[2025-10-12 23:03:49] 2025-10-13 02:33:34,252 | INFO     | monitor loop #377: job 0:6840749726 is in state 'finished'
[2025-10-12 23:03:49] 2025-10-13 02:33:34,253 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 23:03:49] 2025-10-13 02:33:34,860 | INFO     | time since job start (5405s) is within the limit (172800.0s)
[2025-10-12 23:03:49] 2025-10-13 02:33:36,757 | INFO     | monitor loop #378: job 0:6840749726 is in state 'finished'
[2025-10-12 23:03:49] 2025-10-13 02:33:36,758 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 23:03:49] 2025-10-13 02:33:36,885 | INFO     | time since job start (5407s) is within the limit (172800.0s)
[2025-10-12 23:03:49] 2025-10-13 02:33:38,897 | INFO     | time since job start (5409s) is within the limit (172800.0s)
[2025-10-12 23:03:49] 2025-10-13 02:33:39,264 | INFO     | monitor loop #379: job 0:6840749726 is in state 'finished'
[2025-10-12 23:03:49] 2025-10-13 02:33:39,265 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 23:03:49] 2025-10-13 02:33:40,907 | INFO     | time since job start (5411s) is within the limit (172800.0s)
[2025-10-12 23:03:49] 2025-10-13 02:33:41,785 | INFO     | monitor loop #380: job 0:6840749726 is in state 'finished'
[2025-10-12 23:03:49] 2025-10-13 02:33:41,787 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 23:03:49] 2025-10-13 02:33:42,408 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 23:03:49] 2025-10-13 02:33:42,415 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3775.010382812499
[2025-10-12 23:03:49] 2025-10-13 02:33:42,445 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840749726/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 23:03:49] 2025-10-13 02:33:42,445 | INFO     | extracted standard info from prmon json
[2025-10-12 23:03:49] 2025-10-13 02:33:42,445 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 23:03:49] 2025-10-13 02:33:42,445 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 23:03:49] 2025-10-13 02:33:42,446 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 23:03:49] 2025-10-13 02:33:42,446 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 23:03:49] 2025-10-13 02:33:42,447 | INFO     | fitting pss+swap vs Time
[2025-10-12 23:03:49] 2025-10-13 02:33:42,447 | INFO     | sum of square deviations: 152863440.8860762
[2025-10-12 23:03:49] 2025-10-13 02:33:42,447 | INFO     | sum of deviations: 1332305998.0253165
[2025-10-12 23:03:49] 2025-10-13 02:33:42,447 | INFO     | mean x: 1760320220.0379746
[2025-10-12 23:03:49] 2025-10-13 02:33:42,447 | INFO     | mean y: 2483341.658227848
[2025-10-12 23:03:49] 2025-10-13 02:33:42,448 | INFO     | -- intersect: -15339871730.341608
[2025-10-12 23:03:49] 2025-10-13 02:33:42,448 | INFO     | intersect: -15339871730.341608
[2025-10-12 23:03:49] 2025-10-13 02:33:42,448 | INFO     | chi2: 0.015739222352066692
[2025-10-12 23:03:49] 2025-10-13 02:33:42,448 | INFO     | -- intersect: -15339871730.341608
[2025-10-12 23:03:49] 2025-10-13 02:33:42,448 | INFO     | current memory leak: 8.72 B/s (using 79 data points, chi2=0.02)
[2025-10-12 23:03:49] 2025-10-13 02:33:42,448 | INFO     | could have reported an average CPU frequency of 3774 MHz (6 samples)
[2025-10-12 23:03:49] 2025-10-13 02:33:42,448 | INFO     | ..............................
[2025-10-12 23:03:49] 2025-10-13 02:33:42,448 | INFO     | . Timing measurements:
[2025-10-12 23:03:49] 2025-10-13 02:33:42,448 | INFO     | . get job = 0 s
[2025-10-12 23:03:49] 2025-10-13 02:33:42,448 | INFO     | . initial setup = 2 s
[2025-10-12 23:03:49] 2025-10-13 02:33:42,448 | INFO     | . payload setup = 49 s
[2025-10-12 23:03:49] 2025-10-13 02:33:42,448 | INFO     | . stage-in = 0 s
[2025-10-12 23:03:49] 2025-10-13 02:33:42,448 | INFO     | . payload execution = 5271 s
[2025-10-12 23:03:49] 2025-10-13 02:33:42,448 | INFO     | . stage-out = 1 s
[2025-10-12 23:03:49] 2025-10-13 02:33:42,448 | INFO     | . log creation = 0 s
[2025-10-12 23:03:49] 2025-10-13 02:33:42,448 | INFO     | ..............................
[2025-10-12 23:03:49] 2025-10-13 02:33:42,778 | INFO     | 
[2025-10-12 23:03:49] 2025-10-13 02:33:42,779 | INFO     | job summary report
[2025-10-12 23:03:49] 2025-10-13 02:33:42,779 | INFO     | --------------------------------------------------
[2025-10-12 23:03:49] 2025-10-13 02:33:42,779 | INFO     | PanDA job id: 6840749726
[2025-10-12 23:03:49] 2025-10-13 02:33:42,779 | INFO     | task id: 46676269
[2025-10-12 23:03:49] 2025-10-13 02:33:42,779 | INFO     | errors: (none)
[2025-10-12 23:03:49] 2025-10-13 02:33:42,779 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 23:03:49] 2025-10-13 02:33:42,779 | INFO     | pilot state: finished 
[2025-10-12 23:03:49] 2025-10-13 02:33:42,779 | INFO     | transexitcode: 0
[2025-10-12 23:03:49] 2025-10-13 02:33:42,779 | INFO     | exeerrorcode: 0
[2025-10-12 23:03:49] 2025-10-13 02:33:42,779 | INFO     | exeerrordiag: 
[2025-10-12 23:03:49] 2025-10-13 02:33:42,779 | INFO     | exitcode: 0
[2025-10-12 23:03:49] 2025-10-13 02:33:42,779 | INFO     | exitmsg: OK
[2025-10-12 23:03:49] 2025-10-13 02:33:42,779 | INFO     | cpuconsumptiontime: 23900 s
[2025-10-12 23:03:49] 2025-10-13 02:33:42,779 | INFO     | nevents: 400
[2025-10-12 23:03:49] 2025-10-13 02:33:42,779 | INFO     | neventsw: 0
[2025-10-12 23:03:49] 2025-10-13 02:33:42,779 | INFO     | pid: 876585
[2025-10-12 23:03:49] 2025-10-13 02:33:42,779 | INFO     | pgrp: 876585
[2025-10-12 23:03:49] 2025-10-13 02:33:42,779 | INFO     | corecount: 8
[2025-10-12 23:03:49] 2025-10-13 02:33:42,779 | INFO     | event service: False
[2025-10-12 23:03:49] 2025-10-13 02:33:42,779 | INFO     | sizes: {0: 2348028, 1: 2348884, 12: 2348884, 14: 2349174, 22: 2349202, 5325: 2375868, 5327: 2384866, 5329: 2384922, 5364: 2385116}
[2025-10-12 23:03:49] 2025-10-13 02:33:42,779 | INFO     | --------------------------------------------------
[2025-10-12 23:03:49] 2025-10-13 02:33:42,779 | INFO     | 
[2025-10-12 23:03:49] 2025-10-13 02:33:42,779 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 23:03:49] 2025-10-13 02:33:42,833 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 23:03:49] 2025-10-13 02:33:42,834 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 23:03:49] 2025-10-13 02:33:42,834 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 23:03:49] 2025-10-13 02:33:42,834 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 23:03:49] 2025-10-13 02:33:42,834 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 23:03:49] 2025-10-13 02:33:42,834 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 23:03:49] 2025-10-13 02:33:42,834 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 23:03:49] 2025-10-13 02:33:42,834 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 23:03:49] 2025-10-13 02:33:42,834 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 23:03:49] 2025-10-13 02:33:42,834 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 23:03:49] 2025-10-13 02:33:42,834 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 23:03:49] 2025-10-13 02:33:42,834 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 23:03:49] 2025-10-13 02:33:42,834 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 23:03:49] 2025-10-13 02:33:42,834 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 23:03:49] 2025-10-13 02:33:42,834 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 23:03:49] 2025-10-13 02:33:42,834 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 23:03:49] 2025-10-13 02:33:42,834 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 23:03:49] 2025-10-13 02:33:42,834 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 23:03:49] 2025-10-13 02:33:42,834 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 23:03:49] 2025-10-13 02:33:42,834 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 23:03:49] 2025-10-13 02:33:42,835 | INFO     | job 6840749726 has completed (purged errors)
[2025-10-12 23:03:49] 2025-10-13 02:33:42,835 | INFO     | overall cleanup function is called
[2025-10-12 23:03:49] 2025-10-13 02:33:43,845 | INFO     | --- collectZombieJob: --- 10, [876585]
[2025-10-12 23:03:49] 2025-10-13 02:33:43,846 | INFO     | zombie collector waiting for pid 876585
[2025-10-12 23:03:49] 2025-10-13 02:33:43,846 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 23:03:49] 2025-10-13 02:33:43,846 | INFO     | collected zombie processes
[2025-10-12 23:03:49] 2025-10-13 02:33:43,846 | INFO     | will attempt to kill all subprocesses of pid=876585
[2025-10-12 23:03:49] 2025-10-13 02:33:45,068 | INFO     | process IDs to be killed: [876585] (in reverse order)
[2025-10-12 23:03:49] 2025-10-13 02:33:45,385 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 23:03:49] 2025-10-13 02:33:45,385 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 23:03:49] 2025-10-13 02:33:45,407 | INFO     | did not find any defunct processes belonging to 876585
[2025-10-12 23:03:49] 2025-10-13 02:33:45,449 | INFO     | did not find any defunct processes belonging to 876585
[2025-10-12 23:03:49] 2025-10-13 02:33:45,453 | INFO     | ready for new job
[2025-10-12 23:03:49] 2025-10-13 02:33:45,453 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 23:03:49] 2025-10-13 02:33:45,455 | INFO     | ***************************************
[2025-10-12 23:03:49] 2025-10-13 02:33:45,455 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 23:03:49] 2025-10-13 02:33:45,455 | INFO     | ***************************************
[2025-10-12 23:03:49] 2025-10-13 02:33:45,455 | INFO     | 
[2025-10-12 23:03:49] 2025-10-13 02:33:45,463 | INFO     | architecture information:
[2025-10-12 23:03:49] 2025-10-13 02:33:45,467 | INFO     | executing command: cat /etc/os-release
[2025-10-12 23:03:49] 2025-10-13 02:33:45,566 | INFO     | cat /etc/os-release:
[2025-10-12 23:03:49] NAME="CentOS Linux"
[2025-10-12 23:03:49] VERSION="7 (Core)"
[2025-10-12 23:03:49] ID="centos"
[2025-10-12 23:03:49] ID_LIKE="rhel fedora"
[2025-10-12 23:03:49] VERSION_ID="7"
[2025-10-12 23:03:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 23:03:49] ANSI_COLOR="0;31"
[2025-10-12 23:03:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 23:03:49] HOME_URL="https://www.centos.org/"
[2025-10-12 23:03:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 23:03:49] 
[2025-10-12 23:03:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 23:03:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 23:03:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 23:03:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 23:03:49] 
[2025-10-12 23:03:49] 2025-10-13 02:33:45,567 | INFO     | ***************************************
[2025-10-12 23:03:49] 2025-10-13 02:33:46,073 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 23:03:49] 2025-10-13 02:33:46,151 | INFO     | sufficient remaining disk space (169070297088 B)
[2025-10-12 23:03:49] 2025-10-13 02:33:46,151 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 23:03:49] 2025-10-13 02:33:46,151 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 23:03:49] 2025-10-13 02:33:46,151 | INFO     | update_server=False
[2025-10-12 23:03:49] 2025-10-13 02:33:46,151 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 23:03:49] 2025-10-13 02:33:46,152 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 23:03:49] 2025-10-13 02:33:46,153 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:03:49] 2025-10-13 02:33:46,153 | INFO     | aborting loop
[2025-10-12 23:03:49] 2025-10-13 02:33:46,188 | INFO     | all data control threads have been joined
[2025-10-12 23:03:49] 2025-10-13 02:33:46,629 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 23:03:49] 2025-10-13 02:33:47,157 | INFO     | [job] retrieve thread has finished
[2025-10-12 23:03:49] 2025-10-13 02:33:47,159 | INFO     | [job] job monitor thread has finished
[2025-10-12 23:03:49] 2025-10-13 02:33:47,193 | INFO     | [data] control thread has finished
[2025-10-12 23:03:49] 2025-10-13 02:33:47,270 | INFO     | all job control threads have been joined
[2025-10-12 23:03:49] 2025-10-13 02:33:47,491 | INFO     | [job] validate thread has finished
[2025-10-12 23:03:49] 2025-10-13 02:33:47,550 | INFO     | all payload control threads have been joined
[2025-10-12 23:03:49] 2025-10-13 02:33:47,610 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:03:49] 2025-10-13 02:33:47,839 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 23:03:49] 2025-10-13 02:33:47,943 | INFO     | [data] copytool_in thread has finished
[2025-10-12 23:03:49] 2025-10-13 02:33:47,993 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 23:03:49] 2025-10-13 02:33:48,080 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 23:03:49] 2025-10-13 02:33:48,115 | INFO     | [payload] failed_post thread has finished
[2025-10-12 23:03:49] 2025-10-13 02:33:48,276 | INFO     | [job] control thread has finished
[2025-10-12 23:03:49] 2025-10-13 02:33:48,537 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 23:03:49] 2025-10-13 02:33:48,558 | INFO     | [payload] control thread has finished
[2025-10-12 23:03:49] 2025-10-13 02:33:48,621 | INFO     | [job] queue monitor thread has finished
[2025-10-12 23:03:49] 2025-10-13 02:33:48,635 | INFO     | [data] copytool_out thread has finished
[2025-10-12 23:03:49] 2025-10-13 02:33:48,668 | INFO     | [payload] validate_post thread has finished
[2025-10-12 23:03:49] 2025-10-13 02:33:50,173 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 23:03:49] 2025-10-13 02:34:15,557 | INFO     | PID=862377 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 23:03:49] 2025-10-13 02:34:15,563 | INFO     | .. there are 37 such processes running
[2025-10-12 23:03:49] 2025-10-13 02:34:15,564 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 23:03:49] 2025-10-13 02:34:15,564 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 23:03:49] 2025-10-13 02:34:15,564 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 23:03:49] 2025-10-13 02:34:37,943 | INFO     | [monitor] cgroup control has ended
[2025-10-12 23:03:49] 2025-10-13 02:34:37,996 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140401558034240)>', '<ExcThread(monitor, started 140400912221952)>']
[2025-10-12 23:03:49] 2025-10-13 02:34:38,719 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 23:03:49] 2025-10-13 02:34:38,720 | INFO     | [monitor] control thread has ended
[2025-10-12 23:03:49] 2025-10-13 02:34:43,022 | INFO     | all workflow threads have been joined
[2025-10-12 23:03:49] 2025-10-13 02:34:43,022 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 23:03:49] 2025-10-13 02:34:43,023 | INFO     | traces error code: 0
[2025-10-12 23:03:49] 2025-10-13 02:34:43,023 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 23:03:49] 2025-10-13 02:34:43,517 [wrapper] ==== pilot stdout END ====
[2025-10-12 23:03:49] 2025-10-13 02:34:43,545 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 23:03:49] 2025-10-13 02:34:43,575 [wrapper] pilotpid: 862377
[2025-10-12 23:03:49] 2025-10-13 02:34:43,608 [wrapper] Pilot exit status: 0
[2025-10-12 23:03:49] 2025-10-13 02:34:43,758 [wrapper] pandaids: 6840749726
[2025-10-12 23:03:49] 2025-10-13 02:34:44,641 [wrapper] cleanup supervisor_pilot 1381978 862378
[2025-10-12 23:03:49] 2025-10-13 02:34:44,661 [wrapper] Test setup, not cleaning
[2025-10-12 23:03:49] 2025-10-13 02:34:44,680 [wrapper] apfmon messages muted
[2025-10-12 23:03:49] 2025-10-13 02:34:44,702 [wrapper] ==== wrapper stdout END ====
[2025-10-12 23:03:49] 2025-10-13 02:34:44,733 [wrapper] ==== wrapper stderr END ====
[2025-10-12 23:03:49]  *** Error codes and diagnostics ***
[2025-10-12 23:03:49]     "exeErrorCode": 0,
[2025-10-12 23:03:49]     "exeErrorDiag": "",
[2025-10-12 23:03:49]     "pilotErrorCode": 0,
[2025-10-12 23:03:49]     "pilotErrorDiag": "",
[2025-10-12 23:03:49]  *** Listing of results directory ***
[2025-10-12 23:03:49] total 411184
[2025-10-12 23:03:49] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 16:43 pilot3.tar.gz
[2025-10-12 23:03:49] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 16:50 queuedata.json
[2025-10-12 23:03:49] -rwx------. 1 boincer umatlas     36292 Oct 12 16:50 runpilot2-wrapper.sh
[2025-10-12 23:03:49] -rw-r--r--. 1 boincer umatlas       100 Oct 12 21:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 23:03:49] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 21:03 run_atlas
[2025-10-12 23:03:49] -rw-r--r--. 1 boincer umatlas       105 Oct 12 21:03 job.xml
[2025-10-12 23:03:49] -rw-r--r--. 2 boincer umatlas 221415827 Oct 12 21:03 EVNT.46676267._004756.pool.root.1
[2025-10-12 23:03:49] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 21:03 start_atlas.sh
[2025-10-12 23:03:49] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 21:03 shared
[2025-10-12 23:03:49] -rw-r--r--. 2 boincer umatlas    569678 Oct 12 21:03 input.tar.gz
[2025-10-12 23:03:49] -rw-r--r--. 1 boincer umatlas         0 Oct 12 21:03 boinc_lockfile
[2025-10-12 23:03:49] -rw-r--r--. 1 boincer umatlas      2549 Oct 12 21:03 pandaJob.out
[2025-10-12 23:03:49] -rw-------. 1 boincer umatlas    975603 Oct 12 21:03 agis_schedconf.cvmfs.json
[2025-10-12 23:03:49] -rw-------. 1 boincer umatlas   1560580 Oct 12 21:03 agis_ddmendpoints.agis.ALL.json
[2025-10-12 23:03:49] drwx------. 5 boincer umatlas      4096 Oct 12 21:03 pilot3
[2025-10-12 23:03:49] -rw-------. 1 boincer umatlas 193611329 Oct 12 22:31 HITS.46676269._089154.pool.root.1
[2025-10-12 23:03:49] -rw-r--r--. 1 boincer umatlas       530 Oct 12 22:31 boinc_task_state.xml
[2025-10-12 23:03:49] -rw-------. 1 boincer umatlas      1051 Oct 12 22:32 memory_monitor_summary.json
[2025-10-12 23:03:49] -rw-------. 1 boincer umatlas    329120 Oct 12 22:33 log.46676269._089154.job.log.tgz.1
[2025-10-12 23:03:49] -rw-------. 1 boincer umatlas      7803 Oct 12 22:33 heartbeat.json
[2025-10-12 23:03:49] -rw-------. 1 boincer umatlas        95 Oct 12 22:34 pilot_heartbeat.json
[2025-10-12 23:03:49] -rw-------. 1 boincer umatlas      4824 Oct 12 22:34 pilotlog.txt
[2025-10-12 23:03:49] -rw-------. 1 boincer umatlas    731951 Oct 12 22:34 log.46676269._089154.job.log.1
[2025-10-12 23:03:49] -rw-------. 1 boincer umatlas       357 Oct 12 22:34 output.list
[2025-10-12 23:03:49] -rw-r--r--. 1 boincer umatlas       620 Oct 12 22:34 runtime_log
[2025-10-12 23:03:49] -rw-------. 1 boincer umatlas   1075200 Oct 12 22:34 result.tar.gz
[2025-10-12 23:03:49] -rw-r--r--. 1 boincer umatlas      8703 Oct 12 22:34 runtime_log.err
[2025-10-12 23:03:49] -rw-------. 1 boincer umatlas       657 Oct 12 22:34 HZFMDmrCIS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmV1UMDmywDJon.diag
[2025-10-12 23:03:49] -rw-r--r--. 1 boincer umatlas      7174 Oct 12 23:03 init_data.xml
[2025-10-12 23:03:49] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 23:03 boinc_mmap_file
[2025-10-12 23:03:49] -rw-r--r--. 1 boincer umatlas        27 Oct 12 23:03 wrapper_checkpoint.txt
[2025-10-12 23:03:49] -rw-r--r--. 1 boincer umatlas     22323 Oct 12 23:03 stderr.txt
[2025-10-12 23:03:49] HITS file was successfully produced:
[2025-10-12 23:03:49] -rw-------. 1 boincer umatlas 193611329 Oct 12 22:31 shared/HITS.pool.root.1
[2025-10-12 23:03:49]  *** Contents of shared directory: ***
[2025-10-12 23:03:49] total 406940
[2025-10-12 23:03:49] -rw-r--r--. 2 boincer umatlas 221415827 Oct 12 21:03 ATLAS.root_0
[2025-10-12 23:03:49] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 21:03 start_atlas.sh
[2025-10-12 23:03:49] -rw-r--r--. 2 boincer umatlas    569678 Oct 12 21:03 input.tar.gz
[2025-10-12 23:03:49] -rw-------. 1 boincer umatlas 193611329 Oct 12 22:31 HITS.pool.root.1
[2025-10-12 23:03:49] -rw-------. 1 boincer umatlas   1075200 Oct 12 22:34 result.tar.gz
23:03:51 (858175): run_atlas exited; CPU time 24059.753322
23:03:51 (858175): called boinc_finish(0)

</stderr_txt>
]]>

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