Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:58:49 (11923): wrapper (7.7.26015): starting
20:58:49 (11923): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 20:58:49] Arguments: --nthreads 8
[2025-10-12 20:58:49] Threads: 8
[2025-10-12 20:58:49] Checking for CVMFS
[2025-10-12 20:58:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 20:58:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 20:58:50] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 20:58:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 20:58:50] 2.11.2.0 3026 14561 76496 151642 0 58 13884750 20275201 1 130560 0 9368304 99.989 482266 35686 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 20:58:50] CVMFS is ok
[2025-10-12 20:58:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 20:58:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 20:58:50] Further information can be found at the LHC@home message board.
[2025-10-12 20:58:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 20:58:50] Checking for apptainer binary...
[2025-10-12 20:58:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 20:58:50] Running /usr/bin/apptainer --version
[2025-10-12 20:58:50] apptainer version 1.3.2-1.el7
[2025-10-12 20:58:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 20:58:52] c-204-25.aglt2.org
[2025-10-12 20:58:52] apptainer works
[2025-10-12 20:58:52] Set ATHENA_PROC_NUMBER=8
[2025-10-12 20:58:52] Set ATHENA_CORE_NUMBER=8
[2025-10-12 20:58:52] Starting ATLAS job with PandaID=6840537070
[2025-10-12 20:58:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 23:08:27]  *** The last 200 lines of the pilot log: ***
[2025-10-12 23:08:27] 2025-10-13 03:07:23,949 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 23:08:27] 2025-10-13 03:07:23,949 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 23:08:27] 2025-10-13 03:07:23,950 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 23:08:27] 2025-10-13 03:07:23,950 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 23:08:27] 2025-10-13 03:07:23,952 | INFO     | fitting pss+swap vs Time
[2025-10-12 23:08:27] 2025-10-13 03:07:23,953 | INFO     | sum of square deviations: 620244187.5
[2025-10-12 23:08:27] 2025-10-13 03:07:23,954 | INFO     | sum of deviations: 2802380930.999998
[2025-10-12 23:08:27] 2025-10-13 03:07:23,954 | INFO     | mean x: 1760320993.5
[2025-10-12 23:08:27] 2025-10-13 03:07:23,954 | INFO     | mean y: 2495636.8095238097
[2025-10-12 23:08:27] 2025-10-13 03:07:23,954 | INFO     | -- intersect: -7950968634.265763
[2025-10-12 23:08:27] 2025-10-13 03:07:23,954 | INFO     | intersect: -7950968634.265763
[2025-10-12 23:08:27] 2025-10-13 03:07:23,954 | INFO     | chi2: 2.4115225869603485
[2025-10-12 23:08:27] 2025-10-13 03:07:23,955 | INFO     | sum of square deviations: 549294020.0
[2025-10-12 23:08:27] 2025-10-13 03:07:23,955 | INFO     | sum of deviations: 11118448589.0
[2025-10-12 23:08:27] 2025-10-13 03:07:23,955 | INFO     | mean x: 1760320841.0
[2025-10-12 23:08:27] 2025-10-13 03:07:23,956 | INFO     | mean y: 2512912.8016528925
[2025-10-12 23:08:27] 2025-10-13 03:07:23,956 | INFO     | -- intersect: -35628744771.02266
[2025-10-12 23:08:27] 2025-10-13 03:07:23,956 | INFO     | intersect: -35628744771.02266
[2025-10-12 23:08:27] 2025-10-13 03:07:23,956 | INFO     | chi2: 1.600108359406298
[2025-10-12 23:08:27] 2025-10-13 03:07:23,956 | INFO     | current chi2=1.600108359406298 (change=33.647382443836605 %)
[2025-10-12 23:08:27] 2025-10-13 03:07:23,956 | INFO     | sum of square deviations: 483971865.0
[2025-10-12 23:08:27] 2025-10-13 03:07:23,957 | INFO     | sum of deviations: 10682906027.0
[2025-10-12 23:08:27] 2025-10-13 03:07:23,957 | INFO     | mean x: 1760320688.5
[2025-10-12 23:08:27] 2025-10-13 03:07:23,957 | INFO     | mean y: 2511895.4137931033
[2025-10-12 23:08:27] 2025-10-13 03:07:23,957 | INFO     | -- intersect: -38853756108.16
[2025-10-12 23:08:27] 2025-10-13 03:07:23,957 | INFO     | intersect: -38853756108.16
[2025-10-12 23:08:27] 2025-10-13 03:07:23,958 | INFO     | chi2: 1.603077530919881
[2025-10-12 23:08:27] 2025-10-13 03:07:23,958 | INFO     | current chi2=1.603077530919881 (change=-0.18556065257260393 %)
[2025-10-12 23:08:27] 2025-10-13 03:07:23,958 | INFO     | right removable region: 115
[2025-10-12 23:08:27] 2025-10-13 03:07:23,958 | INFO     | sum of square deviations: 549294020.0
[2025-10-12 23:08:27] 2025-10-13 03:07:23,959 | INFO     | sum of deviations: -16585442378.000002
[2025-10-12 23:08:27] 2025-10-13 03:07:23,959 | INFO     | mean x: 1760321146.0
[2025-10-12 23:08:27] 2025-10-13 03:07:23,959 | INFO     | mean y: 2536586.008264463
[2025-10-12 23:08:27] 2025-10-13 03:07:23,959 | INFO     | -- intersect: 53153861506.23573
[2025-10-12 23:08:27] 2025-10-13 03:07:23,959 | INFO     | intersect: 53153861506.23573
[2025-10-12 23:08:27] 2025-10-13 03:07:23,960 | INFO     | chi2: 0.9424243826001554
[2025-10-12 23:08:27] 2025-10-13 03:07:23,960 | INFO     | current chi2=0.9424243826001554 (change=60.9199437858862 %)
[2025-10-12 23:08:27] 2025-10-13 03:07:23,960 | INFO     | sum of square deviations: 483971865.0
[2025-10-12 23:08:27] 2025-10-13 03:07:23,960 | INFO     | sum of deviations: -15195741140.5
[2025-10-12 23:08:27] 2025-10-13 03:07:23,961 | INFO     | mean x: 1760321298.5
[2025-10-12 23:08:27] 2025-10-13 03:07:23,961 | INFO     | mean y: 2533208.9396551726
[2025-10-12 23:08:27] 2025-10-13 03:07:23,961 | INFO     | -- intersect: 55273074144.44389
[2025-10-12 23:08:27] 2025-10-13 03:07:23,961 | INFO     | intersect: 55273074144.44389
[2025-10-12 23:08:27] 2025-10-13 03:07:23,961 | INFO     | chi2: 0.9280066073238986
[2025-10-12 23:08:27] 2025-10-13 03:07:23,962 | INFO     | current chi2=0.9280066073238986 (change=1.5298601715373725 %)
[2025-10-12 23:08:27] 2025-10-13 03:07:23,962 | INFO     | left removable region: 20
[2025-10-12 23:08:27] 2025-10-13 03:07:23,962 | INFO     | sum of square deviations: 265828240.0
[2025-10-12 23:08:27] 2025-10-13 03:07:23,963 | INFO     | sum of deviations: 972358239.0000002
[2025-10-12 23:08:27] 2025-10-13 03:07:23,963 | INFO     | mean x: 1760321268.0
[2025-10-12 23:08:27] 2025-10-13 03:07:23,963 | INFO     | mean y: 2530078.747368421
[2025-10-12 23:08:27] 2025-10-13 03:07:23,963 | INFO     | -- intersect: -6436450551.101167
[2025-10-12 23:08:27] 2025-10-13 03:07:23,963 | INFO     | intersect: -6436450551.101167
[2025-10-12 23:08:27] 2025-10-13 03:07:23,963 | INFO     | chi2: 0.0001782501791843167
[2025-10-12 23:08:27] 2025-10-13 03:07:23,963 | INFO     | -- intersect: -6436450551.101167
[2025-10-12 23:08:27] 2025-10-13 03:07:23,964 | INFO     | current memory leak: 3.66 B/s (using 95 data points, chi2=0.00)
[2025-10-12 23:08:27] 2025-10-13 03:07:23,964 | INFO     | could have reported an average CPU frequency of 2005 MHz (8 samples)
[2025-10-12 23:08:27] 2025-10-13 03:07:23,964 | INFO     | ..............................
[2025-10-12 23:08:27] 2025-10-13 03:07:23,964 | INFO     | . Timing measurements:
[2025-10-12 23:08:27] 2025-10-13 03:07:23,964 | INFO     | . get job = 0 s
[2025-10-12 23:08:27] 2025-10-13 03:07:23,964 | INFO     | . initial setup = 2 s
[2025-10-12 23:08:27] 2025-10-13 03:07:23,965 | INFO     | . payload setup = 8 s
[2025-10-12 23:08:27] 2025-10-13 03:07:23,965 | INFO     | . stage-in = 0 s
[2025-10-12 23:08:27] 2025-10-13 03:07:23,965 | INFO     | . payload execution = 7656 s
[2025-10-12 23:08:27] 2025-10-13 03:07:23,965 | INFO     | . stage-out = 0 s
[2025-10-12 23:08:27] 2025-10-13 03:07:23,965 | INFO     | . log creation = 0 s
[2025-10-12 23:08:27] 2025-10-13 03:07:23,965 | INFO     | ..............................
[2025-10-12 23:08:27] 2025-10-13 03:07:24,059 | INFO     | 
[2025-10-12 23:08:27] 2025-10-13 03:07:24,059 | INFO     | job summary report
[2025-10-12 23:08:27] 2025-10-13 03:07:24,059 | INFO     | --------------------------------------------------
[2025-10-12 23:08:27] 2025-10-13 03:07:24,059 | INFO     | PanDA job id: 6840537070
[2025-10-12 23:08:27] 2025-10-13 03:07:24,059 | INFO     | task id: 46676269
[2025-10-12 23:08:27] 2025-10-13 03:07:24,060 | INFO     | errors: (none)
[2025-10-12 23:08:27] 2025-10-13 03:07:24,060 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 23:08:27] 2025-10-13 03:07:24,060 | INFO     | pilot state: finished 
[2025-10-12 23:08:27] 2025-10-13 03:07:24,060 | INFO     | transexitcode: 0
[2025-10-12 23:08:27] 2025-10-13 03:07:24,060 | INFO     | exeerrorcode: 0
[2025-10-12 23:08:27] 2025-10-13 03:07:24,060 | INFO     | exeerrordiag: 
[2025-10-12 23:08:27] 2025-10-13 03:07:24,061 | INFO     | exitcode: 0
[2025-10-12 23:08:27] 2025-10-13 03:07:24,061 | INFO     | exitmsg: OK
[2025-10-12 23:08:27] 2025-10-13 03:07:24,061 | INFO     | cpuconsumptiontime: 57112 s
[2025-10-12 23:08:27] 2025-10-13 03:07:24,061 | INFO     | nevents: 400
[2025-10-12 23:08:27] 2025-10-13 03:07:24,061 | INFO     | neventsw: 0
[2025-10-12 23:08:27] 2025-10-13 03:07:24,061 | INFO     | pid: 23113
[2025-10-12 23:08:27] 2025-10-13 03:07:24,062 | INFO     | pgrp: 23113
[2025-10-12 23:08:27] 2025-10-13 03:07:24,062 | INFO     | corecount: 8
[2025-10-12 23:08:27] 2025-10-13 03:07:24,062 | INFO     | event service: False
[2025-10-12 23:08:27] 2025-10-13 03:07:24,062 | INFO     | sizes: {0: 2348686, 1: 2348885, 7: 2349147, 11: 2349175, 7668: 2376749, 7670: 2385747, 7671: 2385931, 7677: 2386125}
[2025-10-12 23:08:27] 2025-10-13 03:07:24,062 | INFO     | --------------------------------------------------
[2025-10-12 23:08:27] 2025-10-13 03:07:24,063 | INFO     | 
[2025-10-12 23:08:27] 2025-10-13 03:07:24,063 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 23:08:27] 2025-10-13 03:07:24,091 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 23:08:27] 2025-10-13 03:07:24,092 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 23:08:27] 2025-10-13 03:07:24,092 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 23:08:27] 2025-10-13 03:07:24,092 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 23:08:27] 2025-10-13 03:07:24,092 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 23:08:27] 2025-10-13 03:07:24,093 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 23:08:27] 2025-10-13 03:07:24,093 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 23:08:27] 2025-10-13 03:07:24,093 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 23:08:27] 2025-10-13 03:07:24,093 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 23:08:27] 2025-10-13 03:07:24,093 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 23:08:27] 2025-10-13 03:07:24,094 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 23:08:27] 2025-10-13 03:07:24,094 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 23:08:27] 2025-10-13 03:07:24,094 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 23:08:27] 2025-10-13 03:07:24,094 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 23:08:27] 2025-10-13 03:07:24,094 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 23:08:27] 2025-10-13 03:07:24,094 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 23:08:27] 2025-10-13 03:07:24,095 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 23:08:27] 2025-10-13 03:07:24,095 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 23:08:27] 2025-10-13 03:07:24,095 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 23:08:27] 2025-10-13 03:07:24,095 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 23:08:27] 2025-10-13 03:07:24,095 | INFO     | job 6840537070 has completed (purged errors)
[2025-10-12 23:08:27] 2025-10-13 03:07:24,096 | INFO     | overall cleanup function is called
[2025-10-12 23:08:27] 2025-10-13 03:07:25,104 | INFO     | --- collectZombieJob: --- 10, [23113]
[2025-10-12 23:08:27] 2025-10-13 03:07:25,104 | INFO     | zombie collector waiting for pid 23113
[2025-10-12 23:08:27] 2025-10-13 03:07:25,104 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 23:08:27] 2025-10-13 03:07:25,104 | INFO     | collected zombie processes
[2025-10-12 23:08:27] 2025-10-13 03:07:25,105 | INFO     | will attempt to kill all subprocesses of pid=23113
[2025-10-12 23:08:27] 2025-10-13 03:07:25,192 | INFO     | process IDs to be killed: [23113] (in reverse order)
[2025-10-12 23:08:27] 2025-10-13 03:07:25,243 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 23:08:27] 2025-10-13 03:07:25,243 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 23:08:27] 2025-10-13 03:07:25,247 | INFO     | did not find any defunct processes belonging to 23113
[2025-10-12 23:08:27] 2025-10-13 03:07:25,250 | INFO     | did not find any defunct processes belonging to 23113
[2025-10-12 23:08:27] 2025-10-13 03:07:25,251 | INFO     | ready for new job
[2025-10-12 23:08:27] 2025-10-13 03:07:25,251 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 23:08:27] 2025-10-13 03:07:25,252 | INFO     | ***************************************
[2025-10-12 23:08:27] 2025-10-13 03:07:25,253 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 23:08:27] 2025-10-13 03:07:25,253 | INFO     | ***************************************
[2025-10-12 23:08:27] 2025-10-13 03:07:25,253 | INFO     | 
[2025-10-12 23:08:27] 2025-10-13 03:07:25,253 | INFO     | architecture information:
[2025-10-12 23:08:27] 2025-10-13 03:07:25,254 | INFO     | executing command: cat /etc/os-release
[2025-10-12 23:08:27] 2025-10-13 03:07:25,272 | INFO     | cat /etc/os-release:
[2025-10-12 23:08:27] NAME="CentOS Linux"
[2025-10-12 23:08:27] VERSION="7 (Core)"
[2025-10-12 23:08:27] ID="centos"
[2025-10-12 23:08:27] ID_LIKE="rhel fedora"
[2025-10-12 23:08:27] VERSION_ID="7"
[2025-10-12 23:08:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 23:08:27] ANSI_COLOR="0;31"
[2025-10-12 23:08:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 23:08:27] HOME_URL="https://www.centos.org/"
[2025-10-12 23:08:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 23:08:27] 
[2025-10-12 23:08:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 23:08:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 23:08:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 23:08:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 23:08:27] 
[2025-10-12 23:08:27] 2025-10-13 03:07:25,272 | INFO     | ***************************************
[2025-10-12 23:08:27] 2025-10-13 03:07:25,776 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 23:08:27] 2025-10-13 03:07:25,804 | INFO     | sufficient remaining disk space (18545115136 B)
[2025-10-12 23:08:27] 2025-10-13 03:07:25,805 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 23:08:27] 2025-10-13 03:07:25,805 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 23:08:27] 2025-10-13 03:07:25,805 | INFO     | update_server=False
[2025-10-12 23:08:27] 2025-10-13 03:07:25,805 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 23:08:27] 2025-10-13 03:07:25,806 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:08:27] 2025-10-13 03:07:25,879 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:08:27] 2025-10-13 03:07:25,880 | INFO     | aborting loop
[2025-10-12 23:08:27] 2025-10-13 03:07:25,889 | INFO     | all data control threads have been joined
[2025-10-12 23:08:27] 2025-10-13 03:07:26,270 | INFO     | all job control threads have been joined
[2025-10-12 23:08:27] 2025-10-13 03:07:26,574 | INFO     | all payload control threads have been joined
[2025-10-12 23:08:27] 2025-10-13 03:07:26,811 | INFO     | [job] retrieve thread has finished
[2025-10-12 23:08:27] 2025-10-13 03:07:26,812 | INFO     | [job] queue monitor thread has finished
[2025-10-12 23:08:27] 2025-10-13 03:07:26,836 | INFO     | [data] copytool_in thread has finished
[2025-10-12 23:08:27] 2025-10-13 03:07:26,885 | INFO     | [job] job monitor thread has finished
[2025-10-12 23:08:27] 2025-10-13 03:07:26,895 | INFO     | [data] control thread has finished
[2025-10-12 23:08:27] 2025-10-13 03:07:26,938 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 23:08:27] 2025-10-13 03:07:26,978 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 23:08:27] 2025-10-13 03:07:27,064 | INFO     | [payload] failed_post thread has finished
[2025-10-12 23:08:27] 2025-10-13 03:07:27,275 | INFO     | [job] control thread has finished
[2025-10-12 23:08:27] 2025-10-13 03:07:27,286 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 23:08:27] 2025-10-13 03:07:27,580 | INFO     | [payload] control thread has finished
[2025-10-12 23:08:27] 2025-10-13 03:07:27,641 | INFO     | [payload] validate_post thread has finished
[2025-10-12 23:08:27] 2025-10-13 03:07:27,855 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 23:08:27] 2025-10-13 03:07:28,061 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 23:08:27] 2025-10-13 03:07:28,063 | INFO     | [job] validate thread has finished
[2025-10-12 23:08:27] 2025-10-13 03:07:28,878 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 23:08:27] 2025-10-13 03:07:28,983 | INFO     | [data] copytool_out thread has finished
[2025-10-12 23:08:27] 2025-10-13 03:07:32,884 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 23:08:27] 2025-10-13 03:07:56,615 | INFO     | PID=15640 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 23:08:27] 2025-10-13 03:07:56,615 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 23:08:27] 2025-10-13 03:07:56,616 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 23:08:27] 2025-10-13 03:07:56,616 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 23:08:27] 2025-10-13 03:08:22,002 | INFO     | [monitor] cgroup control has ended
[2025-10-12 23:08:27] 2025-10-13 03:08:22,540 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140241715132224)>', '<ExcThread(monitor, started 140241008584448)>']
[2025-10-12 23:08:27] 2025-10-13 03:08:22,739 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 23:08:27] 2025-10-13 03:08:22,739 | INFO     | [monitor] control thread has ended
[2025-10-12 23:08:27] 2025-10-13 03:08:27,568 | INFO     | all workflow threads have been joined
[2025-10-12 23:08:27] 2025-10-13 03:08:27,569 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 23:08:27] 2025-10-13 03:08:27,570 | INFO     | traces error code: 0
[2025-10-12 23:08:27] 2025-10-13 03:08:27,571 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 23:08:27] 2025-10-13 03:08:27,700 [wrapper] ==== pilot stdout END ====
[2025-10-12 23:08:27] 2025-10-13 03:08:27,705 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 23:08:27] 2025-10-13 03:08:27,709 [wrapper] pilotpid: 15640
[2025-10-12 23:08:27] 2025-10-13 03:08:27,714 [wrapper] Pilot exit status: 0
[2025-10-12 23:08:27] 2025-10-13 03:08:27,733 [wrapper] pandaids: 6840537070
[2025-10-12 23:08:27] 2025-10-13 03:08:27,781 [wrapper] cleanup supervisor_pilot  1482 15641
[2025-10-12 23:08:27] 2025-10-13 03:08:27,785 [wrapper] Test setup, not cleaning
[2025-10-12 23:08:27] 2025-10-13 03:08:27,790 [wrapper] apfmon messages muted
[2025-10-12 23:08:27] 2025-10-13 03:08:27,795 [wrapper] ==== wrapper stdout END ====
[2025-10-12 23:08:27] 2025-10-13 03:08:27,800 [wrapper] ==== wrapper stderr END ====
[2025-10-12 23:08:27]  *** Error codes and diagnostics ***
[2025-10-12 23:08:27]     "exeErrorCode": 0,
[2025-10-12 23:08:27]     "exeErrorDiag": "",
[2025-10-12 23:08:27]     "pilotErrorCode": 0,
[2025-10-12 23:08:27]     "pilotErrorDiag": "",
[2025-10-12 23:08:27]  *** Listing of results directory ***
[2025-10-12 23:08:27] total 420508
[2025-10-12 23:08:27] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 14:20 pilot3.tar.gz
[2025-10-12 23:08:27] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 14:45 queuedata.json
[2025-10-12 23:08:27] -rwx------ 1 boincer umatlas     36292 Oct 12 14:46 runpilot2-wrapper.sh
[2025-10-12 23:08:27] -rw-r--r-- 1 boincer umatlas       100 Oct 12 20:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 23:08:27] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 20:58 run_atlas
[2025-10-12 23:08:27] -rw-r--r-- 1 boincer umatlas       105 Oct 12 20:58 job.xml
[2025-10-12 23:08:27] -rw-r--r-- 2 boincer umatlas 220990140 Oct 12 20:58 EVNT.46676267._004419.pool.root.1
[2025-10-12 23:08:27] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 20:58 start_atlas.sh
[2025-10-12 23:08:27] drwxrwx--x 2 boincer umatlas      4096 Oct 12 20:58 shared
[2025-10-12 23:08:27] -rw-r--r-- 2 boincer umatlas    569680 Oct 12 20:58 input.tar.gz
[2025-10-12 23:08:27] -rw-r--r-- 1 boincer umatlas         0 Oct 12 20:58 boinc_lockfile
[2025-10-12 23:08:27] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 20:58 pandaJob.out
[2025-10-12 23:08:27] -rw------- 1 boincer umatlas    975603 Oct 12 20:59 agis_schedconf.cvmfs.json
[2025-10-12 23:08:27] -rw------- 1 boincer umatlas   1560580 Oct 12 20:59 agis_ddmendpoints.agis.ALL.json
[2025-10-12 23:08:27] drwx------ 5 boincer umatlas      4096 Oct 12 20:59 pilot3
[2025-10-12 23:08:27] -rw-r--r-- 1 boincer umatlas      5910 Oct 12 23:01 init_data.xml
[2025-10-12 23:08:27] -rw------- 1 boincer umatlas 202812867 Oct 12 23:06 HITS.46676269._086489.pool.root.1
[2025-10-12 23:08:27] -rw------- 1 boincer umatlas        95 Oct 12 23:07 pilot_heartbeat.json
[2025-10-12 23:08:27] -rw-r--r-- 1 boincer umatlas       529 Oct 12 23:07 boinc_task_state.xml
[2025-10-12 23:08:27] -rw------- 1 boincer umatlas      1049 Oct 12 23:07 memory_monitor_summary.json
[2025-10-12 23:08:27] -rw------- 1 boincer umatlas    365929 Oct 12 23:07 log.46676269._086489.job.log.tgz.1
[2025-10-12 23:08:27] -rw------- 1 boincer umatlas      7846 Oct 12 23:07 heartbeat.json
[2025-10-12 23:08:27] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 23:08 boinc_mmap_file
[2025-10-12 23:08:27] -rw-r--r-- 1 boincer umatlas        27 Oct 12 23:08 wrapper_checkpoint.txt
[2025-10-12 23:08:27] -rw------- 1 boincer umatlas      4746 Oct 12 23:08 pilotlog.txt
[2025-10-12 23:08:27] -rw------- 1 boincer umatlas   1081488 Oct 12 23:08 log.46676269._086489.job.log.1
[2025-10-12 23:08:27] -rw------- 1 boincer umatlas       357 Oct 12 23:08 output.list
[2025-10-12 23:08:27] -rw-r--r-- 1 boincer umatlas       620 Oct 12 23:08 runtime_log
[2025-10-12 23:08:27] -rw------- 1 boincer umatlas   1464320 Oct 12 23:08 result.tar.gz
[2025-10-12 23:08:27] -rw-r--r-- 1 boincer umatlas      8703 Oct 12 23:08 runtime_log.err
[2025-10-12 23:08:27] -rw------- 1 boincer umatlas       660 Oct 12 23:08 rEnNDmTGGS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm28kNDmofakan.diag
[2025-10-12 23:08:27] -rw-r--r-- 1 boincer umatlas     20855 Oct 12 23:08 stderr.txt
[2025-10-12 23:08:27] HITS file was successfully produced:
[2025-10-12 23:08:27] -rw------- 1 boincer umatlas 202812867 Oct 12 23:06 shared/HITS.pool.root.1
[2025-10-12 23:08:27]  *** Contents of shared directory: ***
[2025-10-12 23:08:27] total 415884
[2025-10-12 23:08:27] -rw-r--r-- 2 boincer umatlas 220990140 Oct 12 20:58 ATLAS.root_0
[2025-10-12 23:08:27] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 20:58 start_atlas.sh
[2025-10-12 23:08:27] -rw-r--r-- 2 boincer umatlas    569680 Oct 12 20:58 input.tar.gz
[2025-10-12 23:08:27] -rw------- 1 boincer umatlas 202812867 Oct 12 23:06 HITS.pool.root.1
[2025-10-12 23:08:27] -rw------- 1 boincer umatlas   1464320 Oct 12 23:08 result.tar.gz
23:08:29 (11923): run_atlas exited; CPU time 57136.614811
23:08:29 (11923): called boinc_finish(0)

</stderr_txt>
]]>

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