Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:08:41 (432127): wrapper (7.7.26015): starting
18:08:41 (432127): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 18:08:41] Arguments: --nthreads 12
[2025-10-12 18:08:41] Threads: 12
[2025-10-12 18:08:41] Checking for CVMFS
[2025-10-12 18:08:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 18:08:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 18:08:42] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 18:08:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 18:08:43] 2.11.5.0 2842 32215 207324 151642 2 477 44609269 45568000 19241 130560 0 341923272 99.869 142639255 25097 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-10-12 18:08:43] CVMFS is ok
[2025-10-12 18:08:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 18:08:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 18:08:43] Further information can be found at the LHC@home message board.
[2025-10-12 18:08:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 18:08:43] Checking for apptainer binary...
[2025-10-12 18:08:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 18:08:43] Running /usr/bin/apptainer --version
[2025-10-12 18:08:43] apptainer version 1.4.1-1.el9
[2025-10-12 18:08:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 18:08:44] wns0075.triumf.lcg
[2025-10-12 18:08:44] apptainer works
[2025-10-12 18:08:44] Set ATHENA_PROC_NUMBER=12
[2025-10-12 18:08:44] Set ATHENA_CORE_NUMBER=12
[2025-10-12 18:08:44] Starting ATLAS job with PandaID=6840853993
[2025-10-12 18:08:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 18:15:00]  *** The last 200 lines of the pilot log: ***
[2025-10-12 18:15:00] 2025-10-13 01:14:25,310 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 18:15:00] 2025-10-13 01:14:25,310 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 18:15:00] 2025-10-13 01:14:25,311 | WARNING  | wrong length of table data, x=[1760317892.0], y=[1982.0] (must be same and length>=4)
[2025-10-12 18:15:00] 2025-10-13 01:14:25,311 | INFO     | could have reported an average CPU frequency of 2523 MHz (4 samples)
[2025-10-12 18:15:00] 2025-10-13 01:14:25,311 | INFO     | ..............................
[2025-10-12 18:15:00] 2025-10-13 01:14:25,311 | INFO     | . Timing measurements:
[2025-10-12 18:15:00] 2025-10-13 01:14:25,311 | INFO     | . get job = 0 s
[2025-10-12 18:15:00] 2025-10-13 01:14:25,311 | INFO     | . initial setup = 3 s
[2025-10-12 18:15:00] 2025-10-13 01:14:25,311 | INFO     | . payload setup = 34 s
[2025-10-12 18:15:00] 2025-10-13 01:14:25,311 | INFO     | . stage-in = 0 s
[2025-10-12 18:15:00] 2025-10-13 01:14:25,311 | INFO     | . payload execution = 50 s
[2025-10-12 18:15:00] 2025-10-13 01:14:25,311 | INFO     | . stage-out = 1 s
[2025-10-12 18:15:00] 2025-10-13 01:14:25,311 | INFO     | . log creation = 0 s
[2025-10-12 18:15:00] 2025-10-13 01:14:25,311 | INFO     | ..............................
[2025-10-12 18:15:00] 2025-10-13 01:14:25,311 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 18:15:00] 2025-10-13 01:14:25,311 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6840853993/pilotlog.txt
[2025-10-12 18:15:00] 2025-10-13 01:14:25,387 | INFO     | time since job start (294s) is within the limit (172800.0s)
[2025-10-12 18:15:00] 2025-10-13 01:14:25,422 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-12 18:15:00] - Log from pilotlog.txt -
[2025-10-12 18:15:00] 2025-10-13 01:14:25,310 | INFO     | extracted standard info from prmon json
[2025-10-12 18:15:00] 2025-10-13 01:14:25,310 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 18:15:00] 2025-10-13 01:14:25,310 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 18:15:00] 2025-10-13 01:14:25,310 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 18:15:00] 2025-10-13 01:14:25,310 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 18:15:00] 2025-10-13 01:14:25,311 | WARNING  | wrong length of table data, x=[1760317892.0], y=[1982.0] (must be same and length>=4)
[2025-10-12 18:15:00] 2025-10-13 01:14:25,311 | INFO     | could have reported an average CPU frequency of 2523 MHz (4 samples)
[2025-10-12 18:15:00] 2025-10-13 01:14:25,311 | INFO     | ..............................
[2025-10-12 18:15:00] 2025-10-13 01:14:25,311 | INFO     | . Timing measurements:
[2025-10-12 18:15:00] 2025-10-13 01:14:25,311 | INFO     | . get job = 0 s
[2025-10-12 18:15:00] 2025-10-13 01:14:25,311 | INFO     | . initial setup = 3 s
[2025-10-12 18:15:00] 2025-10-13 01:14:25,311 | INFO     | . payload setup = 34 s
[2025-10-12 18:15:00] 2025-10-13 01:14:25,311 | INFO     | . stage-in = 0 s
[2025-10-12 18:15:00] 2025-10-13 01:14:25,311 | INFO     | . payload execution = 50 s
[2025-10-12 18:15:00] 2025-10-13 01:14:25,311 | INFO     | . stage-out = 1 s
[2025-10-12 18:15:00] 2025-10-13 01:14:25,311 | INFO     | . log creation = 0 s
[2025-10-12 18:15:00] 2025-10-13 01:14:25,311 | INFO     | ..............................
[2025-10-12 18:15:00] 2025-10-13 01:14:25,311 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 18:15:00] 2025-10-13 01:14:25,311 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6840853993/pilotlog.txt
[2025-10-12 18:15:00] 2025-10-13 01:14:25,387 | INFO     | time since job start (294s) is within the limit (172800.0s)
[2025-10-12 18:15:00] 2025-10-13 01:14:25,422 | WARNING  | 
[2025-10-12 18:15:00] [begin log extracts]
[2025-10-12 18:15:00] - Log from pilotlog.txt -
[2025-10-12 18:15:00] 2025-10-13 01:14:25,310 | INFO     | extracted standard info from prmon json
[2025-10-12 18:15:00] 2025-10-13 01:14:25,310 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 18:15:00] 2025-10-13 01:14:25,310 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 18:15:00] 2025-10-13 01:14:25,310 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 18:15:00] 2025-10-13 01:14:25,310 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 18:15:00] 2025-10-13 01:14:25,311 | WARNING  | wrong length of table data, x=[1760317892.0], y=[1982.0] (must be same and length>=4)
[2025-10-12 18:15:00] 2025-10-13 01:14:25,311 | INFO     | could have reported an average CPU frequency of 2523 MHz (4 samples)
[2025-10-12 18:15:00] 2025-10-13 01:14:25,311 | INFO     | ..............................
[2025-10-12 18:15:00] 2025-10-13 01:14:25,311 | INFO     | . Timing measurements:
[2025-10-12 18:15:00] 2025-10-13 01:14:25,311 | INFO     | . get job = 0 s
[2025-10-12 18:15:00] 2025-10-13 01:14:25,311 | INFO     | . initial setup = 3 s
[2025-10-12 18:15:00] 2025-10-13 01:14:25,311 | INFO     | . payload setup = 34 s
[2025-10-12 18:15:00] 2025-10-13 01:14:25,311 | INFO     | . stage-in = 0 s
[2025-10-12 18:15:00] 2025-10-13 01:14:25,311 | INFO     | . payload execution = 50 s
[2025-10-12 18:15:00] 2025-10-13 01:14:25,311 | INFO     | . stage-out = 1 s
[2025-10-12 18:15:00] 2025-10-13 01:14:25,311 | INFO     | . log creation = 0 s
[2025-10-12 18:15:00] 2025-10-13 01:14:25,311 | INFO     | ..............................
[2025-10-12 18:15:00] 2025-10-13 01:14:25,311 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 18:15:00] 2025-10-13 01:14:25,311 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6840853993/pilotlog.txt
[2025-10-12 18:15:00] 2025-10-13 01:14:25,387 | INFO     | time since job start (294s) is within the limit (172800.0s)
[2025-10-12 18:15:00] [end log extracts]
[2025-10-12 18:15:00] 2025-10-13 01:14:25,423 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-12 18:15:00] 2025-10-13 01:14:25,424 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-10-12 18:15:00] 2025-10-13 01:14:25,604 | INFO     | 
[2025-10-12 18:15:00] 2025-10-13 01:14:25,604 | INFO     | job summary report
[2025-10-12 18:15:00] 2025-10-13 01:14:25,604 | INFO     | --------------------------------------------------
[2025-10-12 18:15:00] 2025-10-13 01:14:25,605 | INFO     | PanDA job id: 6840853993
[2025-10-12 18:15:00] 2025-10-13 01:14:25,605 | INFO     | task id: 46676269
[2025-10-12 18:15:00] 2025-10-13 01:14:25,605 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-12 18:11:48,552 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-12 18:15:00] 2025-10-13 01:14:25,605 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 18:15:00] 2025-10-13 01:14:25,605 | INFO     | pilot state: failed 
[2025-10-12 18:15:00] 2025-10-13 01:14:25,605 | INFO     | transexitcode: 65
[2025-10-12 18:15:00] 2025-10-13 01:14:25,605 | INFO     | exeerrorcode: 65
[2025-10-12 18:15:00] 2025-10-13 01:14:25,605 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-10-12 18:15:00] 2025-10-13 01:14:25,605 | INFO     | exitcode: 65
[2025-10-12 18:15:00] 2025-10-13 01:14:25,605 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-10-12 18:15:00] 2025-10-13 01:14:25,605 | INFO     | cpuconsumptiontime: 20 s
[2025-10-12 18:15:00] 2025-10-13 01:14:25,605 | INFO     | nevents: 0
[2025-10-12 18:15:00] 2025-10-13 01:14:25,605 | INFO     | neventsw: 0
[2025-10-12 18:15:00] 2025-10-13 01:14:25,605 | INFO     | pid: 443059
[2025-10-12 18:15:00] 2025-10-13 01:14:25,605 | INFO     | pgrp: 443059
[2025-10-12 18:15:00] 2025-10-13 01:14:25,605 | INFO     | corecount: 12
[2025-10-12 18:15:00] 2025-10-13 01:14:25,605 | INFO     | event service: False
[2025-10-12 18:15:00] 2025-10-13 01:14:25,605 | INFO     | sizes: {0: 2348029, 1: 2348882, 12: 2348882, 23: 2348910, 26: 2349200, 34: 2349228, 89: 2372561, 92: 2376853, 95: 2376881, 238: 2377047}
[2025-10-12 18:15:00] 2025-10-13 01:14:25,605 | INFO     | --------------------------------------------------
[2025-10-12 18:15:00] 2025-10-13 01:14:25,605 | INFO     | 
[2025-10-12 18:15:00] 2025-10-13 01:14:25,606 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-10-12 18:15:00] 2025-10-13 01:14:25,621 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 18:15:00] 2025-10-13 01:14:25,622 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 18:15:00] 2025-10-13 01:14:25,622 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 18:15:00] 2025-10-13 01:14:25,622 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 18:15:00] 2025-10-13 01:14:25,622 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 18:15:00] 2025-10-13 01:14:25,622 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 18:15:00] 2025-10-13 01:14:25,622 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 18:15:00] 2025-10-13 01:14:25,622 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 18:15:00] 2025-10-13 01:14:25,622 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 18:15:00] 2025-10-13 01:14:25,622 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 18:15:00] 2025-10-13 01:14:25,622 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 18:15:00] 2025-10-13 01:14:25,622 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 18:15:00] 2025-10-13 01:14:25,622 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 18:15:00] 2025-10-13 01:14:25,622 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 18:15:00] 2025-10-13 01:14:25,622 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 18:15:00] 2025-10-13 01:14:25,623 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 18:15:00] 2025-10-13 01:14:25,623 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 18:15:00] 2025-10-13 01:14:25,623 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 18:15:00] 2025-10-13 01:14:25,623 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 18:15:00] 2025-10-13 01:14:25,623 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 18:15:00] 2025-10-13 01:14:25,623 | INFO     | job 6840853993 has completed (purged errors)
[2025-10-12 18:15:00] 2025-10-13 01:14:25,623 | INFO     | overall cleanup function is called
[2025-10-12 18:15:00] 2025-10-13 01:14:26,631 | INFO     | --- collectZombieJob: --- 10, [443059]
[2025-10-12 18:15:00] 2025-10-13 01:14:26,631 | INFO     | zombie collector waiting for pid 443059
[2025-10-12 18:15:00] 2025-10-13 01:14:26,631 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 18:15:00] 2025-10-13 01:14:26,631 | INFO     | collected zombie processes
[2025-10-12 18:15:00] 2025-10-13 01:14:26,631 | INFO     | will attempt to kill all subprocesses of pid=443059
[2025-10-12 18:15:00] 2025-10-13 01:14:26,918 | INFO     | process IDs to be killed: [443059] (in reverse order)
[2025-10-12 18:15:00] 2025-10-13 01:14:27,016 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 18:15:00] 2025-10-13 01:14:27,016 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 18:15:00] 2025-10-13 01:14:27,028 | INFO     | did not find any defunct processes belonging to 443059
[2025-10-12 18:15:00] 2025-10-13 01:14:27,039 | INFO     | did not find any defunct processes belonging to 443059
[2025-10-12 18:15:00] 2025-10-13 01:14:27,040 | INFO     | ready for new job
[2025-10-12 18:15:00] 2025-10-13 01:14:27,040 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 18:15:00] 2025-10-13 01:14:27,042 | INFO     | ***************************************
[2025-10-12 18:15:00] 2025-10-13 01:14:27,042 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 18:15:00] 2025-10-13 01:14:27,042 | INFO     | ***************************************
[2025-10-12 18:15:00] 2025-10-13 01:14:27,042 | INFO     | 
[2025-10-12 18:15:00] 2025-10-13 01:14:27,045 | INFO     | architecture information:
[2025-10-12 18:15:00] 2025-10-13 01:14:27,045 | INFO     | executing command: cat /etc/os-release
[2025-10-12 18:15:00] 2025-10-13 01:14:27,083 | INFO     | cat /etc/os-release:
[2025-10-12 18:15:00] NAME="CentOS Linux"
[2025-10-12 18:15:00] VERSION="7 (Core)"
[2025-10-12 18:15:00] ID="centos"
[2025-10-12 18:15:00] ID_LIKE="rhel fedora"
[2025-10-12 18:15:00] VERSION_ID="7"
[2025-10-12 18:15:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 18:15:00] ANSI_COLOR="0;31"
[2025-10-12 18:15:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 18:15:00] HOME_URL="https://www.centos.org/"
[2025-10-12 18:15:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 18:15:00] 
[2025-10-12 18:15:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 18:15:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 18:15:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 18:15:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 18:15:00] 
[2025-10-12 18:15:00] 2025-10-13 01:14:27,084 | INFO     | ***************************************
[2025-10-12 18:15:00] 2025-10-13 01:14:27,587 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-10-12 18:15:00] 2025-10-13 01:14:27,601 | INFO     | sufficient remaining disk space (1773247922176 B)
[2025-10-12 18:15:00] 2025-10-13 01:14:27,602 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 18:15:00] 2025-10-13 01:14:27,602 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 18:15:00] 2025-10-13 01:14:27,602 | INFO     | update_server=False
[2025-10-12 18:15:00] 2025-10-13 01:14:27,602 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 18:15:00] 2025-10-13 01:14:27,602 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:15:00] 2025-10-13 01:14:27,602 | INFO     | aborting loop
[2025-10-12 18:15:00] 2025-10-13 01:14:27,603 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:15:00] 2025-10-13 01:14:27,837 | INFO     | all job control threads have been joined
[2025-10-12 18:15:00] 2025-10-13 01:14:28,556 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 18:15:00] 2025-10-13 01:14:28,608 | INFO     | [job] job monitor thread has finished
[2025-10-12 18:15:00] 2025-10-13 01:14:28,609 | INFO     | [job] queue monitor thread has finished
[2025-10-12 18:15:00] 2025-10-13 01:14:28,615 | INFO     | all payload control threads have been joined
[2025-10-12 18:15:00] 2025-10-13 01:14:28,638 | INFO     | [payload] failed_post thread has finished
[2025-10-12 18:15:00] 2025-10-13 01:14:28,640 | INFO     | all data control threads have been joined
[2025-10-12 18:15:00] 2025-10-13 01:14:28,640 | INFO     | [job] retrieve thread has finished
[2025-10-12 18:15:00] 2025-10-13 01:14:28,657 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 18:15:00] 2025-10-13 01:14:28,664 | INFO     | [job] validate thread has finished
[2025-10-12 18:15:00] 2025-10-13 01:14:28,784 | INFO     | [payload] validate_post thread has finished
[2025-10-12 18:15:00] 2025-10-13 01:14:28,845 | INFO     | [job] control thread has finished
[2025-10-12 18:15:00] 2025-10-13 01:14:28,976 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 18:15:00] 2025-10-13 01:14:29,186 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 18:15:00] 2025-10-13 01:14:29,279 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 18:15:00] 2025-10-13 01:14:29,621 | INFO     | [payload] control thread has finished
[2025-10-12 18:15:00] 2025-10-13 01:14:29,646 | INFO     | [data] control thread has finished
[2025-10-12 18:15:00] 2025-10-13 01:14:29,685 | INFO     | [data] copytool_in thread has finished
[2025-10-12 18:15:00] 2025-10-13 01:14:30,084 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 18:15:00] 2025-10-13 01:14:30,663 | INFO     | [data] copytool_out thread has finished
[2025-10-12 18:15:00] 2025-10-13 01:14:31,073 | INFO     | [monitor] cgroup control has ended
[2025-10-12 18:15:00] 2025-10-13 01:14:32,565 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 18:15:00] 2025-10-13 01:14:33,934 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140383919560512)>', '<ExcThread(monitor, started 140383522633472)>']
[2025-10-12 18:15:00] 2025-10-13 01:14:38,960 | INFO     | all workflow threads have been joined
[2025-10-12 18:15:00] 2025-10-13 01:14:38,960 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 18:15:00] 2025-10-13 01:14:38,961 | INFO     | traces error code: 0
[2025-10-12 18:15:00] 2025-10-13 01:14:38,961 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 18:15:00] 2025-10-13 01:14:59,091 | INFO     | PID=435933 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 18:15:00] 2025-10-13 01:14:59,092 | INFO     | .. there are 35 such processes running
[2025-10-12 18:15:00] 2025-10-13 01:14:59,092 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 18:15:00] 2025-10-13 01:14:59,092 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 18:15:00] 2025-10-13 01:14:59,092 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 18:15:00] 2025-10-13 01:14:59,093 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 18:15:00] 2025-10-13 01:14:59,093 | INFO     | [monitor] control thread has ended
[2025-10-12 18:15:00] 2025-10-13 01:14:59,285 [wrapper] ==== pilot stdout END ====
[2025-10-12 18:15:00] 2025-10-13 01:14:59,297 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 18:15:00] 2025-10-13 01:14:59,303 [wrapper] pilotpid: 435933
[2025-10-12 18:15:00] 2025-10-13 01:14:59,314 [wrapper] Pilot exit status: 0
[2025-10-12 18:15:00] 2025-10-13 01:14:59,410 [wrapper] pandaids: 6840853993
[2025-10-12 18:15:00] 2025-10-13 01:14:59,505 [wrapper] cleanup supervisor_pilot  435939 435934
[2025-10-12 18:15:00] 2025-10-13 01:14:59,512 [wrapper] Test setup, not cleaning
[2025-10-12 18:15:00] 2025-10-13 01:14:59,524 [wrapper] apfmon messages muted
[2025-10-12 18:15:00] 2025-10-13 01:14:59,543 [wrapper] ==== wrapper stdout END ====
[2025-10-12 18:15:00] 2025-10-13 01:14:59,580 [wrapper] ==== wrapper stderr END ====
[2025-10-12 18:15:00]  *** Error codes and diagnostics ***
[2025-10-12 18:15:00]     "exeErrorCode": 65,
[2025-10-12 18:15:00]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-10-12 18:15:00]     "pilotErrorCode": 1305,
[2025-10-12 18:15:00]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-10-12 18:15:00]  *** Listing of results directory ***
[2025-10-12 18:15:00] total 220500
[2025-10-12 18:15:00] -rw-r--r--. 1 boinc boinc    557409 Oct 12 15:49 pilot3.tar.gz
[2025-10-12 18:15:00] -rwx------. 1 boinc boinc     36292 Oct 12 15:50 runpilot2-wrapper.sh
[2025-10-12 18:15:00] -rw-r--r--. 1 boinc boinc      5112 Oct 12 15:50 queuedata.json
[2025-10-12 18:15:00] -rw-r--r--. 1 boinc boinc       100 Oct 12 18:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 18:15:00] -rwxr-xr-x. 1 boinc boinc      7986 Oct 12 18:08 run_atlas
[2025-10-12 18:15:00] -rw-r--r--. 1 boinc boinc       105 Oct 12 18:08 job.xml
[2025-10-12 18:15:00] -rw-r--r--. 1 boinc boinc      6593 Oct 12 18:08 init_data.xml
[2025-10-12 18:15:00] -rw-r--r--. 2 boinc boinc 221655716 Oct 12 18:08 EVNT.46676267._004634.pool.root.1
[2025-10-12 18:15:00] drwxrwx--x. 2 boinc boinc      4096 Oct 12 18:08 shared
[2025-10-12 18:15:00] -rw-r--r--. 2 boinc boinc    569681 Oct 12 18:08 input.tar.gz
[2025-10-12 18:15:00] -rw-r--r--. 2 boinc boinc     15120 Oct 12 18:08 start_atlas.sh
[2025-10-12 18:15:00] -rw-r--r--. 1 boinc boinc         0 Oct 12 18:08 boinc_lockfile
[2025-10-12 18:15:00] -rw-r--r--. 1 boinc boinc      2550 Oct 12 18:08 pandaJob.out
[2025-10-12 18:15:00] -rw-------. 1 boinc boinc    975603 Oct 12 18:09 agis_schedconf.cvmfs.json
[2025-10-12 18:15:00] -rw-------. 1 boinc boinc   1560580 Oct 12 18:09 agis_ddmendpoints.agis.ALL.json
[2025-10-12 18:15:00] drwx------. 5 boinc boinc      4096 Oct 12 18:09 pilot3
[2025-10-12 18:15:00] -rw-r--r--. 1 boinc boinc       524 Oct 12 18:11 boinc_task_state.xml
[2025-10-12 18:15:00] -rw-------. 1 boinc boinc       952 Oct 12 18:11 memory_monitor_summary.json
[2025-10-12 18:15:00] -rw-------. 1 boinc boinc     22316 Oct 12 18:11 log.46676269._091563.job.log.tgz.1
[2025-10-12 18:15:00] -rw-------. 1 boinc boinc      8383 Oct 12 18:14 heartbeat.json
[2025-10-12 18:15:00] -rw-------. 1 boinc boinc       822 Oct 12 18:14 pilotlog.txt
[2025-10-12 18:15:00] -rw-------. 1 boinc boinc        95 Oct 12 18:14 pilot_heartbeat.json
[2025-10-12 18:15:00] -rw-------. 1 boinc boinc     95584 Oct 12 18:14 log.46676269._091563.job.log.1
[2025-10-12 18:15:00] -rw-r--r--. 1 boinc boinc        22 Oct 12 18:14 wrapper_checkpoint.txt
[2025-10-12 18:15:00] -rw-------. 1 boinc boinc       188 Oct 12 18:14 output.list
[2025-10-12 18:15:00] -rw-r--r--. 1 boinc boinc      8192 Oct 12 18:14 boinc_mmap_file
[2025-10-12 18:15:00] -rw-r--r--. 1 boinc boinc       620 Oct 12 18:14 runtime_log
[2025-10-12 18:15:00] -rw-------. 1 boinc boinc    133120 Oct 12 18:14 result.tar.gz
[2025-10-12 18:15:00] -rw-------. 1 boinc boinc       644 Oct 12 18:15 SP3KDmr4JS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmdDVMDmnzqJ3m.diag
[2025-10-12 18:15:00] -rw-r--r--. 1 boinc boinc      8528 Oct 12 18:15 runtime_log.err
[2025-10-12 18:15:00] -rw-r--r--. 1 boinc boinc     21744 Oct 12 18:15 stderr.txt
[2025-10-12 18:15:00] No HITS result produced
[2025-10-12 18:15:00]  *** Contents of shared directory: ***
[2025-10-12 18:15:00] total 217176
[2025-10-12 18:15:00] -rw-r--r--. 2 boinc boinc 221655716 Oct 12 18:08 ATLAS.root_0
[2025-10-12 18:15:00] -rw-r--r--. 2 boinc boinc    569681 Oct 12 18:08 input.tar.gz
[2025-10-12 18:15:00] -rw-r--r--. 2 boinc boinc     15120 Oct 12 18:08 start_atlas.sh
[2025-10-12 18:15:00] -rw-------. 1 boinc boinc    133120 Oct 12 18:14 result.tar.gz
18:15:01 (432127): run_atlas exited; CPU time 33.110174
18:15:01 (432127): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN