Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:33:59 (3542139): wrapper (7.7.26015): starting
06:33:59 (3542139): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 06:33:59] Arguments: --nthreads 12
[2025-10-13 06:33:59] Threads: 12
[2025-10-13 06:33:59] Checking for CVMFS
[2025-10-13 06:33:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 06:33:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 06:33:59] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 06:33:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 06:33:59] 2.13.2.0 8715 30014 234452 151649 1 185 40508491 46080001 5934 130560 0 203936919 99.892 56068460 21597 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-10-13 06:33:59] CVMFS is ok
[2025-10-13 06:33:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 06:33:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 06:33:59] Further information can be found at the LHC@home message board.
[2025-10-13 06:33:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 06:33:59] Checking for apptainer binary...
[2025-10-13 06:33:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 06:33:59] Running /usr/bin/apptainer --version
[2025-10-13 06:33:59] apptainer version 1.4.2-1.el9
[2025-10-13 06:34:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 06:34:00] mff2104.farm.particle.cz
[2025-10-13 06:34:00] apptainer works
[2025-10-13 06:34:00] Set ATHENA_PROC_NUMBER=12
[2025-10-13 06:34:00] Set ATHENA_CORE_NUMBER=12
[2025-10-13 06:34:00] Starting ATLAS job with PandaID=6840531848
[2025-10-13 06:34:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 07:30:24]  *** The last 200 lines of the pilot log: ***
[2025-10-13 07:30:24]  status=None
[2025-10-13 07:30:24]  status_code=0
[2025-10-13 07:30:24]  storage_token=
[2025-10-13 07:30:24]  surl=/scratch/.boinc/slots/1/PanDA_Pilot-6840531848/log.46676269._085869.job.log.tgz.1
[2025-10-13 07:30:24]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b7/0d/log.46676269._085869.job.log.tgz.1
[2025-10-13 07:30:24]  workdir=None
[2025-10-13 07:30:24] ]
[2025-10-13 07:30:24] 2025-10-13 05:29:14,744 | INFO     | transferring file log.46676269._085869.job.log.tgz.1 from /scratch/.boinc/slots/1/PanDA_Pilot-6840531848/log.46676269._085869.job.log.tgz.1 to /scratch/.boinc/slot
[2025-10-13 07:30:24] 2025-10-13 05:29:14,744 | INFO     | executing command: /usr/bin/env mv /scratch/.boinc/slots/1/PanDA_Pilot-6840531848/log.46676269._085869.job.log.tgz.1 /scratch/.boinc/slots/1/log.46676269._085869.j
[2025-10-13 07:30:24] 2025-10-13 05:29:14,771 | INFO     | adding to output.list: log.46676269._085869.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b7/0d/log.46676269._085869.job.log.tg
[2025-10-13 07:30:24] 2025-10-13 05:29:14,772 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 07:30:24] 2025-10-13 05:29:14,772 | INFO     | summary of transferred files:
[2025-10-13 07:30:24] 2025-10-13 05:29:14,772 | INFO     |  -- lfn=log.46676269._085869.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 07:30:24] 2025-10-13 05:29:14,773 | INFO     | stage-out finished correctly
[2025-10-13 07:30:24] 2025-10-13 05:29:15,618 | INFO     | monitor loop #244: job 0:6840531848 is in state 'finished'
[2025-10-13 07:30:24] 2025-10-13 05:29:15,619 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 07:30:24] 2025-10-13 05:29:15,799 | INFO     | time since job start (3303s) is within the limit (172800.0s)
[2025-10-13 07:30:24] 2025-10-13 05:29:16,919 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 07:30:24] 2025-10-13 05:29:17,013 | INFO     | job 6840531848 has state=finished
[2025-10-13 07:30:24] 2025-10-13 05:29:17,013 | INFO     | preparing for final server update for job 6840531848 in state='finished'
[2025-10-13 07:30:24] 2025-10-13 05:29:17,014 | INFO     | this job has now completed (state=finished)
[2025-10-13 07:30:24] 2025-10-13 05:29:17,014 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 07:30:24] 2025-10-13 05:29:17,014 | INFO     | log transfer has been attempted: DONE
[2025-10-13 07:30:24] 2025-10-13 05:29:17,014 | INFO     | job 6840531848 has finished - writing final server update
[2025-10-13 07:30:24] 2025-10-13 05:29:17,014 | INFO     | total number of processed events: 400 (read)
[2025-10-13 07:30:24] 2025-10-13 05:29:17,015 | INFO     | executing command: lscpu
[2025-10-13 07:30:24] 2025-10-13 05:29:17,099 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 07:30:24] 2025-10-13 05:29:17,806 | INFO     | time since job start (3305s) is within the limit (172800.0s)
[2025-10-13 07:30:24] 2025-10-13 05:29:18,123 | INFO     | monitor loop #245: job 0:6840531848 is in state 'finished'
[2025-10-13 07:30:24] 2025-10-13 05:29:18,123 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 07:30:24] 2025-10-13 05:29:19,812 | INFO     | time since job start (3307s) is within the limit (172800.0s)
[2025-10-13 07:30:24] 2025-10-13 05:29:20,624 | INFO     | monitor loop #246: job 0:6840531848 is in state 'finished'
[2025-10-13 07:30:24] 2025-10-13 05:29:20,624 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 07:30:24] 2025-10-13 05:29:21,818 | INFO     | time since job start (3309s) is within the limit (172800.0s)
[2025-10-13 07:30:24] 2025-10-13 05:29:22,648 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 07:30:24] 2025-10-13 05:29:22,664 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2736.996927083333
[2025-10-13 07:30:24] 2025-10-13 05:29:22,682 | INFO     | using path: /scratch/.boinc/slots/1/PanDA_Pilot-6840531848/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 07:30:24] 2025-10-13 05:29:22,683 | INFO     | extracted standard info from prmon json
[2025-10-13 07:30:24] 2025-10-13 05:29:22,683 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 07:30:24] 2025-10-13 05:29:22,684 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 07:30:24] 2025-10-13 05:29:22,684 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 07:30:24] 2025-10-13 05:29:22,684 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 07:30:24] 2025-10-13 05:29:22,685 | INFO     | fitting pss+swap vs Time
[2025-10-13 07:30:24] 2025-10-13 05:29:22,686 | INFO     | sum of square deviations: 32179208.0
[2025-10-13 07:30:24] 2025-10-13 05:29:22,686 | INFO     | sum of deviations: -1099797426.0
[2025-10-13 07:30:24] 2025-10-13 05:29:22,686 | INFO     | mean x: 1760331791.0
[2025-10-13 07:30:24] 2025-10-13 05:29:22,686 | INFO     | mean y: 2735158.8936170214
[2025-10-13 07:30:24] 2025-10-13 05:29:22,686 | INFO     | -- intersect: 60166067104.408554
[2025-10-13 07:30:24] 2025-10-13 05:29:22,686 | INFO     | intersect: 60166067104.408554
[2025-10-13 07:30:24] 2025-10-13 05:29:22,686 | INFO     | chi2: 0.001373716452318573
[2025-10-13 07:30:24] 2025-10-13 05:29:22,687 | INFO     | -- intersect: 60166067104.408554
[2025-10-13 07:30:24] 2025-10-13 05:29:22,687 | INFO     | current memory leak: -34.18 B/s (using 47 data points, chi2=0.00)
[2025-10-13 07:30:24] 2025-10-13 05:29:22,687 | INFO     | could have reported an average CPU frequency of 2740 MHz (5 samples)
[2025-10-13 07:30:24] 2025-10-13 05:29:22,687 | INFO     | ..............................
[2025-10-13 07:30:24] 2025-10-13 05:29:22,687 | INFO     | . Timing measurements:
[2025-10-13 07:30:24] 2025-10-13 05:29:22,687 | INFO     | . get job = 0 s
[2025-10-13 07:30:24] 2025-10-13 05:29:22,687 | INFO     | . initial setup = 1 s
[2025-10-13 07:30:24] 2025-10-13 05:29:22,687 | INFO     | . payload setup = 7 s
[2025-10-13 07:30:24] 2025-10-13 05:29:22,688 | INFO     | . stage-in = 0 s
[2025-10-13 07:30:24] 2025-10-13 05:29:22,688 | INFO     | . payload execution = 3272 s
[2025-10-13 07:30:24] 2025-10-13 05:29:22,688 | INFO     | . stage-out = 0 s
[2025-10-13 07:30:24] 2025-10-13 05:29:22,688 | INFO     | . log creation = 0 s
[2025-10-13 07:30:24] 2025-10-13 05:29:22,688 | INFO     | ..............................
[2025-10-13 07:30:24] 2025-10-13 05:29:23,270 | INFO     | 
[2025-10-13 07:30:24] 2025-10-13 05:29:23,271 | INFO     | job summary report
[2025-10-13 07:30:24] 2025-10-13 05:29:23,271 | INFO     | --------------------------------------------------
[2025-10-13 07:30:24] 2025-10-13 05:29:23,271 | INFO     | PanDA job id: 6840531848
[2025-10-13 07:30:24] 2025-10-13 05:29:23,271 | INFO     | task id: 46676269
[2025-10-13 07:30:24] 2025-10-13 05:29:23,271 | INFO     | errors: (none)
[2025-10-13 07:30:24] 2025-10-13 05:29:23,271 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 07:30:24] 2025-10-13 05:29:23,271 | INFO     | pilot state: finished 
[2025-10-13 07:30:24] 2025-10-13 05:29:23,271 | INFO     | transexitcode: 0
[2025-10-13 07:30:24] 2025-10-13 05:29:23,271 | INFO     | exeerrorcode: 0
[2025-10-13 07:30:24] 2025-10-13 05:29:23,271 | INFO     | exeerrordiag: 
[2025-10-13 07:30:24] 2025-10-13 05:29:23,271 | INFO     | exitcode: 0
[2025-10-13 07:30:24] 2025-10-13 05:29:23,271 | INFO     | exitmsg: OK
[2025-10-13 07:30:24] 2025-10-13 05:29:23,271 | INFO     | cpuconsumptiontime: 34564 s
[2025-10-13 07:30:24] 2025-10-13 05:29:23,272 | INFO     | nevents: 400
[2025-10-13 07:30:24] 2025-10-13 05:29:23,272 | INFO     | neventsw: 0
[2025-10-13 07:30:24] 2025-10-13 05:29:23,272 | INFO     | pid: 3555515
[2025-10-13 07:30:24] 2025-10-13 05:29:23,272 | INFO     | pgrp: 3555515
[2025-10-13 07:30:24] 2025-10-13 05:29:23,272 | INFO     | corecount: 12
[2025-10-13 07:30:24] 2025-10-13 05:29:23,272 | INFO     | event service: False
[2025-10-13 07:30:24] 2025-10-13 05:29:23,272 | INFO     | sizes: {0: 2348029, 1: 2348886, 7: 2349148, 12: 2349176, 3283: 2374737, 3286: 2383737, 3288: 2383921, 3294: 2384147}
[2025-10-13 07:30:24] 2025-10-13 05:29:23,272 | INFO     | --------------------------------------------------
[2025-10-13 07:30:24] 2025-10-13 05:29:23,272 | INFO     | 
[2025-10-13 07:30:24] 2025-10-13 05:29:23,272 | INFO     | executing command: ls -lF /scratch/.boinc/slots/1
[2025-10-13 07:30:24] 2025-10-13 05:29:23,296 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 07:30:24] 2025-10-13 05:29:23,297 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 07:30:24] 2025-10-13 05:29:23,297 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 07:30:24] 2025-10-13 05:29:23,297 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 07:30:24] 2025-10-13 05:29:23,297 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 07:30:24] 2025-10-13 05:29:23,297 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 07:30:24] 2025-10-13 05:29:23,297 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 07:30:24] 2025-10-13 05:29:23,297 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 07:30:24] 2025-10-13 05:29:23,297 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 07:30:24] 2025-10-13 05:29:23,297 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 07:30:24] 2025-10-13 05:29:23,298 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 07:30:24] 2025-10-13 05:29:23,298 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 07:30:24] 2025-10-13 05:29:23,298 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 07:30:24] 2025-10-13 05:29:23,298 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 07:30:24] 2025-10-13 05:29:23,298 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 07:30:24] 2025-10-13 05:29:23,298 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 07:30:24] 2025-10-13 05:29:23,298 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 07:30:24] 2025-10-13 05:29:23,298 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 07:30:24] 2025-10-13 05:29:23,298 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 07:30:24] 2025-10-13 05:29:23,298 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 07:30:24] 2025-10-13 05:29:23,298 | INFO     | job 6840531848 has completed (purged errors)
[2025-10-13 07:30:24] 2025-10-13 05:29:23,299 | INFO     | overall cleanup function is called
[2025-10-13 07:30:24] 2025-10-13 05:29:24,308 | INFO     | --- collectZombieJob: --- 10, [3555515]
[2025-10-13 07:30:24] 2025-10-13 05:29:24,309 | INFO     | zombie collector waiting for pid 3555515
[2025-10-13 07:30:24] 2025-10-13 05:29:24,309 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 07:30:24] 2025-10-13 05:29:24,309 | INFO     | collected zombie processes
[2025-10-13 07:30:24] 2025-10-13 05:29:24,309 | INFO     | will attempt to kill all subprocesses of pid=3555515
[2025-10-13 07:30:24] 2025-10-13 05:29:24,653 | INFO     | process IDs to be killed: [3555515] (in reverse order)
[2025-10-13 07:30:24] 2025-10-13 05:29:24,761 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 07:30:24] 2025-10-13 05:29:24,762 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 07:30:24] 2025-10-13 05:29:24,773 | INFO     | did not find any defunct processes belonging to 3555515
[2025-10-13 07:30:24] 2025-10-13 05:29:24,784 | INFO     | did not find any defunct processes belonging to 3555515
[2025-10-13 07:30:24] 2025-10-13 05:29:24,784 | INFO     | ready for new job
[2025-10-13 07:30:24] 2025-10-13 05:29:24,784 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 07:30:24] 2025-10-13 05:29:24,786 | INFO     | ***************************************
[2025-10-13 07:30:24] 2025-10-13 05:29:24,786 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 07:30:24] 2025-10-13 05:29:24,786 | INFO     | ***************************************
[2025-10-13 07:30:24] 2025-10-13 05:29:24,786 | INFO     | 
[2025-10-13 07:30:24] 2025-10-13 05:29:24,792 | INFO     | architecture information:
[2025-10-13 07:30:24] 2025-10-13 05:29:24,793 | INFO     | executing command: cat /etc/os-release
[2025-10-13 07:30:24] 2025-10-13 05:29:24,817 | INFO     | cat /etc/os-release:
[2025-10-13 07:30:24] NAME="CentOS Linux"
[2025-10-13 07:30:24] VERSION="7 (Core)"
[2025-10-13 07:30:24] ID="centos"
[2025-10-13 07:30:24] ID_LIKE="rhel fedora"
[2025-10-13 07:30:24] VERSION_ID="7"
[2025-10-13 07:30:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 07:30:24] ANSI_COLOR="0;31"
[2025-10-13 07:30:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 07:30:24] HOME_URL="https://www.centos.org/"
[2025-10-13 07:30:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 07:30:24] 
[2025-10-13 07:30:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 07:30:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 07:30:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 07:30:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 07:30:24] 
[2025-10-13 07:30:24] 2025-10-13 05:29:24,817 | INFO     | ***************************************
[2025-10-13 07:30:24] 2025-10-13 05:29:25,320 | INFO     | executing command: df -mP /scratch/.boinc/slots/1
[2025-10-13 07:30:24] 2025-10-13 05:29:25,345 | INFO     | sufficient remaining disk space (1681096966144 B)
[2025-10-13 07:30:24] 2025-10-13 05:29:25,345 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 07:30:24] 2025-10-13 05:29:25,345 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 07:30:24] 2025-10-13 05:29:25,345 | INFO     | update_server=False
[2025-10-13 07:30:24] 2025-10-13 05:29:25,345 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 07:30:24] 2025-10-13 05:29:25,382 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 07:30:24] 2025-10-13 05:29:25,445 | INFO     | all data control threads have been joined
[2025-10-13 07:30:24] 2025-10-13 05:29:25,630 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 07:30:24] 2025-10-13 05:29:25,631 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 07:30:24] 2025-10-13 05:29:25,631 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 07:30:24] 2025-10-13 05:29:25,631 | INFO     | will abort loop
[2025-10-13 07:30:24] 2025-10-13 05:29:25,738 | INFO     | all job control threads have been joined
[2025-10-13 07:30:24] 2025-10-13 05:29:26,351 | INFO     | [job] retrieve thread has finished
[2025-10-13 07:30:24] 2025-10-13 05:29:26,361 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 07:30:24] 2025-10-13 05:29:26,451 | INFO     | [data] control thread has finished
[2025-10-13 07:30:24] 2025-10-13 05:29:26,482 | INFO     | all payload control threads have been joined
[2025-10-13 07:30:24] 2025-10-13 05:29:26,635 | INFO     | [job] job monitor thread has finished
[2025-10-13 07:30:24] 2025-10-13 05:29:26,744 | INFO     | [job] control thread has finished
[2025-10-13 07:30:24] 2025-10-13 05:29:26,885 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 07:30:24] 2025-10-13 05:29:26,918 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 07:30:24] 2025-10-13 05:29:27,319 | INFO     | [payload] failed_post thread has finished
[2025-10-13 07:30:24] 2025-10-13 05:29:27,388 | INFO     | [data] copytool_out thread has finished
[2025-10-13 07:30:24] 2025-10-13 05:29:27,416 | INFO     | [job] validate thread has finished
[2025-10-13 07:30:24] 2025-10-13 05:29:27,488 | INFO     | [payload] control thread has finished
[2025-10-13 07:30:24] 2025-10-13 05:29:27,497 | INFO     | [data] copytool_in thread has finished
[2025-10-13 07:30:24] 2025-10-13 05:29:27,498 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 07:30:24] 2025-10-13 05:29:27,523 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 07:30:24] 2025-10-13 05:29:27,795 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 07:30:24] 2025-10-13 05:29:27,908 | INFO     | [payload] validate_post thread has finished
[2025-10-13 07:30:24] 2025-10-13 05:29:28,801 | INFO     | [job] queue monitor thread has finished
[2025-10-13 07:30:24] 2025-10-13 05:29:31,529 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 07:30:24] 2025-10-13 05:29:55,325 | INFO     | PID=3546210 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 07:30:24] 2025-10-13 05:29:55,325 | INFO     | .. there are 8 such processes running
[2025-10-13 07:30:24] 2025-10-13 05:29:55,325 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 07:30:24] 2025-10-13 05:29:55,325 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 07:30:24] 2025-10-13 05:29:55,325 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 07:30:24] 2025-10-13 05:30:17,319 | INFO     | [monitor] cgroup control has ended
[2025-10-13 07:30:24] 2025-10-13 05:30:19,364 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139732740474688)>', '<ExcThread(monitor, started 139732256286464)>']
[2025-10-13 07:30:24] 2025-10-13 05:30:19,440 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 07:30:24] 2025-10-13 05:30:19,441 | INFO     | [monitor] control thread has ended
[2025-10-13 07:30:24] 2025-10-13 05:30:24,374 | INFO     | all workflow threads have been joined
[2025-10-13 07:30:24] 2025-10-13 05:30:24,375 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 07:30:24] 2025-10-13 05:30:24,375 | INFO     | traces error code: 0
[2025-10-13 07:30:24] 2025-10-13 05:30:24,376 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 07:30:24] 2025-10-13 05:30:24,510 [wrapper] ==== pilot stdout END ====
[2025-10-13 07:30:24] 2025-10-13 05:30:24,514 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 07:30:24] 2025-10-13 05:30:24,518 [wrapper] pilotpid: 3546210
[2025-10-13 07:30:24] 2025-10-13 05:30:24,521 [wrapper] Pilot exit status: 0
[2025-10-13 07:30:24] 2025-10-13 05:30:24,535 [wrapper] pandaids: 6840531848
[2025-10-13 07:30:24] 2025-10-13 05:30:24,615 [wrapper] cleanup supervisor_pilot 3733649 3546211
[2025-10-13 07:30:24] 2025-10-13 05:30:24,619 [wrapper] Test setup, not cleaning
[2025-10-13 07:30:24] 2025-10-13 05:30:24,623 [wrapper] apfmon messages muted
[2025-10-13 07:30:24] 2025-10-13 05:30:24,627 [wrapper] ==== wrapper stdout END ====
[2025-10-13 07:30:24] 2025-10-13 05:30:24,630 [wrapper] ==== wrapper stderr END ====
[2025-10-13 07:30:24]  *** Error codes and diagnostics ***
[2025-10-13 07:30:24]     "exeErrorCode": 0,
[2025-10-13 07:30:24]     "exeErrorDiag": "",
[2025-10-13 07:30:24]     "pilotErrorCode": 0,
[2025-10-13 07:30:24]     "pilotErrorDiag": "",
[2025-10-13 07:30:24]  *** Listing of results directory ***
[2025-10-13 07:30:24] total 408464
[2025-10-13 07:30:24] -rw-r--r-- 1 boinc boinc    557409 Oct 12 19:57 pilot3.tar.gz
[2025-10-13 07:30:24] -rw-r--r-- 1 boinc boinc      5112 Oct 12 20:16 queuedata.json
[2025-10-13 07:30:24] -rwx------ 1 boinc boinc     36292 Oct 12 20:16 runpilot2-wrapper.sh
[2025-10-13 07:30:24] -rw-r--r-- 1 boinc boinc       100 Oct 13 06:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 07:30:24] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 06:33 run_atlas
[2025-10-13 07:30:24] -rw-r--r-- 1 boinc boinc       105 Oct 13 06:33 job.xml
[2025-10-13 07:30:24] -rw-r--r-- 1 boinc boinc      6665 Oct 13 06:33 init_data.xml
[2025-10-13 07:30:24] -rw-r--r-- 2 boinc boinc 219553349 Oct 13 06:33 EVNT.46676267._004394.pool.root.1
[2025-10-13 07:30:24] -rw-r--r-- 2 boinc boinc     15120 Oct 13 06:33 start_atlas.sh
[2025-10-13 07:30:24] drwxrwx--x 2 boinc boinc      4096 Oct 13 06:33 shared
[2025-10-13 07:30:24] -rw-r--r-- 2 boinc boinc    569681 Oct 13 06:33 input.tar.gz
[2025-10-13 07:30:24] -rw-r--r-- 1 boinc boinc         0 Oct 13 06:33 boinc_lockfile
[2025-10-13 07:30:24] -rw-r--r-- 1 boinc boinc      2550 Oct 13 06:34 pandaJob.out
[2025-10-13 07:30:24] -rw------- 1 boinc boinc    974365 Oct 13 06:34 agis_schedconf.cvmfs.json
[2025-10-13 07:30:24] -rw------- 1 boinc boinc   1560580 Oct 13 06:34 agis_ddmendpoints.agis.ALL.json
[2025-10-13 07:30:24] drwx------ 5 boinc boinc      4096 Oct 13 06:34 pilot3
[2025-10-13 07:30:24] -rw------- 1 boinc boinc 193055866 Oct 13 07:28 HITS.46676269._085869.pool.root.1
[2025-10-13 07:30:24] -rw-r--r-- 1 boinc boinc       529 Oct 13 07:28 boinc_task_state.xml
[2025-10-13 07:30:24] -rw------- 1 boinc boinc      1022 Oct 13 07:29 memory_monitor_summary.json
[2025-10-13 07:30:24] -rw------- 1 boinc boinc    381203 Oct 13 07:29 log.46676269._085869.job.log.tgz.1
[2025-10-13 07:30:24] -rw------- 1 boinc boinc        95 Oct 13 07:29 pilot_heartbeat.json
[2025-10-13 07:30:24] -rw------- 1 boinc boinc      7783 Oct 13 07:29 heartbeat.json
[2025-10-13 07:30:24] -rw-r--r-- 1 boinc boinc        27 Oct 13 07:30 wrapper_checkpoint.txt
[2025-10-13 07:30:24] -rw-r--r-- 1 boinc boinc      8192 Oct 13 07:30 boinc_mmap_file
[2025-10-13 07:30:24] -rw------- 1 boinc boinc      5012 Oct 13 07:30 pilotlog.txt
[2025-10-13 07:30:24] -rw------- 1 boinc boinc    499684 Oct 13 07:30 log.46676269._085869.job.log.1
[2025-10-13 07:30:24] -rw------- 1 boinc boinc       357 Oct 13 07:30 output.list
[2025-10-13 07:30:24] -rw-r--r-- 1 boinc boinc       620 Oct 13 07:30 runtime_log
[2025-10-13 07:30:24] -rw------- 1 boinc boinc    901120 Oct 13 07:30 result.tar.gz
[2025-10-13 07:30:24] -rw------- 1 boinc boinc       663 Oct 13 07:30 WuBODmCnFS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDma0kNDmd3mWFm.diag
[2025-10-13 07:30:24] -rw-r--r-- 1 boinc boinc      8764 Oct 13 07:30 runtime_log.err
[2025-10-13 07:30:24] -rw-r--r-- 1 boinc boinc     22035 Oct 13 07:30 stderr.txt
[2025-10-13 07:30:24] HITS file was successfully produced:
[2025-10-13 07:30:24] -rw------- 1 boinc boinc 193055866 Oct 13 07:28 shared/HITS.pool.root.1
[2025-10-13 07:30:24]  *** Contents of shared directory: ***
[2025-10-13 07:30:24] total 404400
[2025-10-13 07:30:24] -rw-r--r-- 2 boinc boinc 219553349 Oct 13 06:33 ATLAS.root_0
[2025-10-13 07:30:24] -rw-r--r-- 2 boinc boinc     15120 Oct 13 06:33 start_atlas.sh
[2025-10-13 07:30:24] -rw-r--r-- 2 boinc boinc    569681 Oct 13 06:33 input.tar.gz
[2025-10-13 07:30:24] -rw------- 1 boinc boinc 193055866 Oct 13 07:28 HITS.pool.root.1
[2025-10-13 07:30:24] -rw------- 1 boinc boinc    901120 Oct 13 07:30 result.tar.gz
07:30:26 (3542139): run_atlas exited; CPU time 34630.721081
07:30:26 (3542139): called boinc_finish(0)

</stderr_txt>
]]>

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