Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:30:55 (3952486): wrapper (7.7.26015): starting
12:30:55 (3952486): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 12:30:55] Arguments: --nthreads 4
[2025-10-13 12:30:55] Threads: 4
[2025-10-13 12:30:55] Checking for CVMFS
[2025-10-13 12:30:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 12:30:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 12:30:55] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 12:30:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 12:30:55] 2.9.2.0 1950177 5708 95404 151658 2 56 30353470 36864001 0 130560 0 5237129 99.992 193761 756 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 12:30:55] CVMFS is ok
[2025-10-13 12:30:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 12:30:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 12:30:55] Further information can be found at the LHC@home message board.
[2025-10-13 12:30:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 12:30:55] Checking for apptainer binary...
[2025-10-13 12:30:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 12:30:55] Running /usr/bin/apptainer --version
[2025-10-13 12:30:55] apptainer version 1.4.1-1.1
[2025-10-13 12:30:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 12:30:55] thA314a
[2025-10-13 12:30:55] apptainer works
[2025-10-13 12:30:56] Set ATHENA_PROC_NUMBER=4
[2025-10-13 12:30:56] Set ATHENA_CORE_NUMBER=4
[2025-10-13 12:30:56] Starting ATLAS job with PandaID=6840749340
[2025-10-13 12:30:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 13:42:15]  *** The last 200 lines of the pilot log: ***
[2025-10-13 13:42:15] 2025-10-13 11:41:42,784 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 13:42:15] 2025-10-13 11:41:42,784 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 13:42:15] 2025-10-13 11:41:42,785 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 13:42:15] 2025-10-13 11:41:42,785 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 13:42:15] 2025-10-13 11:41:42,785 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 13:42:15] 2025-10-13 11:41:42,785 | INFO     | job 6840749340 has completed (purged errors)
[2025-10-13 13:42:15] 2025-10-13 11:41:42,785 | INFO     | overall cleanup function is called
[2025-10-13 13:42:15] 2025-10-13 11:41:43,791 | INFO     | --- collectZombieJob: --- 10, [3962815]
[2025-10-13 13:42:15] 2025-10-13 11:41:43,792 | INFO     | zombie collector waiting for pid 3962815
[2025-10-13 13:42:15] 2025-10-13 11:41:43,792 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 13:42:15] 2025-10-13 11:41:43,792 | INFO     | collected zombie processes
[2025-10-13 13:42:15] 2025-10-13 11:41:43,792 | INFO     | will attempt to kill all subprocesses of pid=3962815
[2025-10-13 13:42:15] 2025-10-13 11:41:43,837 | INFO     | process IDs to be killed: [3962815] (in reverse order)
[2025-10-13 13:42:15] 2025-10-13 11:41:43,868 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 13:42:15] 2025-10-13 11:41:43,868 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 13:42:15] 2025-10-13 11:41:43,870 | INFO     | did not find any defunct processes belonging to 3962815
[2025-10-13 13:42:15] 2025-10-13 11:41:43,871 | INFO     | did not find any defunct processes belonging to 3962815
[2025-10-13 13:42:15] 2025-10-13 11:41:43,871 | INFO     | ready for new job
[2025-10-13 13:42:15] 2025-10-13 11:41:43,871 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 13:42:15] 2025-10-13 11:41:43,872 | INFO     | ***************************************
[2025-10-13 13:42:15] 2025-10-13 11:41:43,872 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 13:42:15] 2025-10-13 11:41:43,872 | INFO     | ***************************************
[2025-10-13 13:42:15] 2025-10-13 11:41:43,872 | INFO     | 
[2025-10-13 13:42:15] 2025-10-13 11:41:43,873 | INFO     | architecture information:
[2025-10-13 13:42:15] 2025-10-13 11:41:43,873 | INFO     | executing command: cat /etc/os-release
[2025-10-13 13:42:15] 2025-10-13 11:41:43,885 | INFO     | cat /etc/os-release:
[2025-10-13 13:42:15] NAME="CentOS Linux"
[2025-10-13 13:42:15] VERSION="7 (Core)"
[2025-10-13 13:42:15] ID="centos"
[2025-10-13 13:42:15] ID_LIKE="rhel fedora"
[2025-10-13 13:42:15] VERSION_ID="7"
[2025-10-13 13:42:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 13:42:15] ANSI_COLOR="0;31"
[2025-10-13 13:42:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 13:42:15] HOME_URL="https://www.centos.org/"
[2025-10-13 13:42:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 13:42:15] 
[2025-10-13 13:42:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 13:42:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 13:42:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 13:42:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 13:42:15] 
[2025-10-13 13:42:15] 2025-10-13 11:41:43,886 | INFO     | ***************************************
[2025-10-13 13:42:15] 2025-10-13 11:41:44,389 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 13:42:15] 2025-10-13 11:41:44,406 | INFO     | sufficient remaining disk space (229140070400 B)
[2025-10-13 13:42:15] 2025-10-13 11:41:44,407 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 13:42:15] 2025-10-13 11:41:44,407 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 13:42:15] 2025-10-13 11:41:44,407 | INFO     | update_server=False
[2025-10-13 13:42:15] 2025-10-13 11:41:44,407 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 13:42:15] 2025-10-13 11:41:44,407 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 13:42:15] 2025-10-13 11:41:44,481 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 13:42:15] 2025-10-13 11:41:44,583 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 13:42:15] 2025-10-13 11:41:44,584 | INFO     | aborting loop
[2025-10-13 13:42:15] 2025-10-13 11:41:44,749 | INFO     | all data control threads have been joined
[2025-10-13 13:42:15] 2025-10-13 11:41:45,161 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 13:42:15] 2025-10-13 11:41:45,410 | INFO     | [job] queue monitor thread has finished
[2025-10-13 13:42:15] 2025-10-13 11:41:45,412 | INFO     | [job] retrieve thread has finished
[2025-10-13 13:42:15] 2025-10-13 11:41:45,501 | INFO     | all payload control threads have been joined
[2025-10-13 13:42:15] 2025-10-13 11:41:45,515 | INFO     | all job control threads have been joined
[2025-10-13 13:42:15] 2025-10-13 11:41:45,589 | INFO     | [job] job monitor thread has finished
[2025-10-13 13:42:15] 2025-10-13 11:41:45,617 | INFO     | [data] copytool_in thread has finished
[2025-10-13 13:42:15] 2025-10-13 11:41:45,755 | INFO     | [data] control thread has finished
[2025-10-13 13:42:15] 2025-10-13 11:41:46,171 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 13:42:15] 2025-10-13 11:41:46,176 | INFO     | [payload] failed_post thread has finished
[2025-10-13 13:42:15] 2025-10-13 11:41:46,507 | INFO     | [payload] control thread has finished
[2025-10-13 13:42:15] 2025-10-13 11:41:46,520 | INFO     | [job] control thread has finished
[2025-10-13 13:42:15] 2025-10-13 11:41:46,725 | INFO     | [job] validate thread has finished
[2025-10-13 13:42:15] 2025-10-13 11:41:46,809 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 13:42:15] 2025-10-13 11:41:46,810 | INFO     | [payload] validate_post thread has finished
[2025-10-13 13:42:15] 2025-10-13 11:41:46,893 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 13:42:15] 2025-10-13 11:41:47,167 | INFO     | [data] copytool_out thread has finished
[2025-10-13 13:42:15] 2025-10-13 11:41:48,488 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 13:42:15] 2025-10-13 11:41:54,577 | INFO     | job.realtimelogging is not enabled
[2025-10-13 13:42:15] 2025-10-13 11:41:55,582 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 13:42:15] 2025-10-13 11:42:08,235 | INFO     | [monitor] cgroup control has ended
[2025-10-13 13:42:15] 2025-10-13 11:42:09,633 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140414665832256)>', '<ExcThread(monitor, started 140413285431040)>']
[2025-10-13 13:42:15] 2025-10-13 11:42:14,658 | INFO     | all workflow threads have been joined
[2025-10-13 13:42:15] 2025-10-13 11:42:14,659 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 13:42:15] 2025-10-13 11:42:14,659 | INFO     | traces error code: 0
[2025-10-13 13:42:15] 2025-10-13 11:42:14,659 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 13:42:15] 2025-10-13 11:42:15,296 | INFO     | PID=3956278 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 13:42:15] 2025-10-13 11:42:15,296 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 13:42:15] 2025-10-13 11:42:15,296 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 13:42:15] 2025-10-13 11:42:15,296 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 13:42:15] 2025-10-13 11:42:15,296 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 13:42:15] 2025-10-13 11:42:15,296 | INFO     | [monitor] control thread has ended
[2025-10-13 13:42:15] 2025-10-13 11:42:15,359 [wrapper] ==== pilot stdout END ====
[2025-10-13 13:42:15] 2025-10-13 11:42:15,363 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 13:42:15] 2025-10-13 11:42:15,366 [wrapper] pilotpid: 3956278
[2025-10-13 13:42:15] 2025-10-13 11:42:15,370 [wrapper] Pilot exit status: 0
[2025-10-13 13:42:15] 2025-10-13 11:42:15,380 [wrapper] pandaids: 6840749340
[2025-10-13 13:42:15] 2025-10-13 11:42:15,401 [wrapper] cleanup supervisor_pilot 3972584 3956279
[2025-10-13 13:42:15] 2025-10-13 11:42:15,405 [wrapper] Test setup, not cleaning
[2025-10-13 13:42:15] 2025-10-13 11:42:15,408 [wrapper] apfmon messages muted
[2025-10-13 13:42:15] 2025-10-13 11:42:15,412 [wrapper] ==== wrapper stdout END ====
[2025-10-13 13:42:15] 2025-10-13 11:42:15,415 [wrapper] ==== wrapper stderr END ====
[2025-10-13 13:42:15]  *** Error codes and diagnostics ***
[2025-10-13 13:42:15]     "exeErrorCode": 0,
[2025-10-13 13:42:15]     "exeErrorDiag": "",
[2025-10-13 13:42:15]     "pilotErrorCode": 0,
[2025-10-13 13:42:15]     "pilotErrorDiag": "",
[2025-10-13 13:42:15]  *** Listing of results directory ***
[2025-10-13 13:42:15] total 409096
[2025-10-13 13:42:15] -rw-r--r-- 1 boinc boinc    557409 Oct 12 22:23 pilot3.tar.gz
[2025-10-13 13:42:15] -rw-r--r-- 1 boinc boinc      5112 Oct 12 22:38 queuedata.json
[2025-10-13 13:42:15] -rwx------ 1 boinc boinc     36292 Oct 12 22:38 runpilot2-wrapper.sh
[2025-10-13 13:42:15] -rw-r--r-- 1 boinc boinc       100 Oct 13 12:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 13:42:15] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 12:30 run_atlas
[2025-10-13 13:42:15] -rw-r--r-- 1 boinc boinc       105 Oct 13 12:30 job.xml
[2025-10-13 13:42:15] -rw-r--r-- 2 boinc boinc 221309483 Oct 13 12:30 EVNT.46676267._004854.pool.root.1
[2025-10-13 13:42:15] -rw-r--r-- 2 boinc boinc    569683 Oct 13 12:30 input.tar.gz
[2025-10-13 13:42:15] -rw-r--r-- 2 boinc boinc     15120 Oct 13 12:30 start_atlas.sh
[2025-10-13 13:42:15] drwxrwx--x 2 boinc boinc      4096 Oct 13 12:30 shared
[2025-10-13 13:42:15] -rw-r--r-- 1 boinc boinc         0 Oct 13 12:30 boinc_setup_complete
[2025-10-13 13:42:15] -rw-r--r-- 1 boinc boinc      6371 Oct 13 12:30 init_data.xml
[2025-10-13 13:42:15] -rw-r--r-- 1 boinc boinc         0 Oct 13 12:30 boinc_lockfile
[2025-10-13 13:42:15] -rw-r--r-- 1 boinc boinc      2549 Oct 13 12:30 pandaJob.out
[2025-10-13 13:42:15] -rw------- 1 boinc boinc    972497 Oct 13 12:31 agis_schedconf.cvmfs.json
[2025-10-13 13:42:15] -rw------- 1 boinc boinc   1560580 Oct 13 12:31 agis_ddmendpoints.agis.ALL.json
[2025-10-13 13:42:15] drwx------ 5 boinc boinc      4096 Oct 13 12:31 pilot3
[2025-10-13 13:42:15] -rw------- 1 boinc boinc 191968722 Oct 13 13:41 HITS.46676269._088861.pool.root.1
[2025-10-13 13:42:15] -rw-r--r-- 1 boinc boinc       529 Oct 13 13:41 boinc_task_state.xml
[2025-10-13 13:42:15] -rw------- 1 boinc boinc        95 Oct 13 13:41 pilot_heartbeat.json
[2025-10-13 13:42:15] -rw------- 1 boinc boinc      1019 Oct 13 13:41 memory_monitor_summary.json
[2025-10-13 13:42:15] -rw------- 1 boinc boinc    246781 Oct 13 13:41 log.46676269._088861.job.log.tgz.1
[2025-10-13 13:42:15] -rw------- 1 boinc boinc      7766 Oct 13 13:41 heartbeat.json
[2025-10-13 13:42:15] -rw-r--r-- 1 boinc boinc      8192 Oct 13 13:41 boinc_mmap_file
[2025-10-13 13:42:15] -rw-r--r-- 1 boinc boinc        27 Oct 13 13:41 wrapper_checkpoint.txt
[2025-10-13 13:42:15] -rw------- 1 boinc boinc       747 Oct 13 13:42 pilotlog.txt
[2025-10-13 13:42:15] -rw------- 1 boinc boinc    630161 Oct 13 13:42 log.46676269._088861.job.log.1
[2025-10-13 13:42:15] -rw------- 1 boinc boinc       357 Oct 13 13:42 output.list
[2025-10-13 13:42:15] -rw-r--r-- 1 boinc boinc       620 Oct 13 13:42 runtime_log
[2025-10-13 13:42:15] -rw------- 1 boinc boinc    890880 Oct 13 13:42 result.tar.gz
[2025-10-13 13:42:15] -rw------- 1 boinc boinc       659 Oct 13 13:42 wbVKDmh0HS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmayUMDmGrFdyn.diag
[2025-10-13 13:42:15] -rw-r--r-- 1 boinc boinc      8782 Oct 13 13:42 runtime_log.err
[2025-10-13 13:42:15] -rw-r--r-- 1 boinc boinc     11410 Oct 13 13:42 stderr.txt
[2025-10-13 13:42:15] HITS file was successfully produced:
[2025-10-13 13:42:15] -rw------- 1 boinc boinc 191968722 Oct 13 13:41 shared/HITS.pool.root.1
[2025-10-13 13:42:15]  *** Contents of shared directory: ***
[2025-10-13 13:42:15] total 405052
[2025-10-13 13:42:15] -rw-r--r-- 2 boinc boinc 221309483 Oct 13 12:30 ATLAS.root_0
[2025-10-13 13:42:15] -rw-r--r-- 2 boinc boinc    569683 Oct 13 12:30 input.tar.gz
[2025-10-13 13:42:15] -rw-r--r-- 2 boinc boinc     15120 Oct 13 12:30 start_atlas.sh
[2025-10-13 13:42:15] -rw------- 1 boinc boinc 191968722 Oct 13 13:41 HITS.pool.root.1
[2025-10-13 13:42:15] -rw------- 1 boinc boinc    890880 Oct 13 13:42 result.tar.gz
13:42:16 (3952486): run_atlas exited; CPU time 15973.067278
13:42:16 (3952486): called boinc_finish(0)

</stderr_txt>
]]>

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