Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:40:06 (18989): wrapper (7.7.26015): starting
20:40:06 (18989): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 20:40:06] Arguments: --nthreads 8
[2025-10-12 20:40:06] Threads: 8
[2025-10-12 20:40:06] Checking for CVMFS
[2025-10-12 20:40:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 20:40:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 20:40:06] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 20:40:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 20:40:06] 2.11.2.0 2936 196465 78424 151642 0 59 12886950 20275201 1 130560 1 68188107 99.976 8534482 26903 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 20:40:06] CVMFS is ok
[2025-10-12 20:40:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 20:40:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 20:40:06] Further information can be found at the LHC@home message board.
[2025-10-12 20:40:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 20:40:06] Checking for apptainer binary...
[2025-10-12 20:40:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 20:40:06] Running /usr/bin/apptainer --version
[2025-10-12 20:40:06] apptainer version 1.3.2-1.el7
[2025-10-12 20:40:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 20:40:08] c-204-13.aglt2.org
[2025-10-12 20:40:08] apptainer works
[2025-10-12 20:40:08] Set ATHENA_PROC_NUMBER=8
[2025-10-12 20:40:08] Set ATHENA_CORE_NUMBER=8
[2025-10-12 20:40:08] Starting ATLAS job with PandaID=6840749494
[2025-10-12 20:40:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 22:53:46]  *** The last 200 lines of the pilot log: ***
[2025-10-12 22:53:46] 2025-10-13 02:52:45,180 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 22:53:46] 2025-10-13 02:52:45,180 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 22:53:46] 2025-10-13 02:52:45,180 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 22:53:46] 2025-10-13 02:52:45,184 | INFO     | fitting pss+swap vs Time
[2025-10-12 22:53:46] 2025-10-13 02:52:45,185 | INFO     | sum of square deviations: 681212772.5
[2025-10-12 22:53:46] 2025-10-13 02:52:45,185 | INFO     | sum of deviations: -7470265326.000002
[2025-10-12 22:53:46] 2025-10-13 02:52:45,185 | INFO     | mean x: 1760319993.5
[2025-10-12 22:53:46] 2025-10-13 02:52:45,186 | INFO     | mean y: 2501598.076923077
[2025-10-12 22:53:46] 2025-10-13 02:52:45,186 | INFO     | -- intersect: 19306393041.34489
[2025-10-12 22:53:46] 2025-10-13 02:52:45,186 | INFO     | intersect: 19306393041.34489
[2025-10-12 22:53:46] 2025-10-13 02:52:45,186 | INFO     | chi2: 2.4160493346514227
[2025-10-12 22:53:46] 2025-10-13 02:52:45,186 | INFO     | sum of square deviations: 605592750.0
[2025-10-12 22:53:46] 2025-10-13 02:52:45,187 | INFO     | sum of deviations: 1871919078.0000024
[2025-10-12 22:53:46] 2025-10-13 02:52:45,187 | INFO     | mean x: 1760319841.0
[2025-10-12 22:53:46] 2025-10-13 02:52:45,187 | INFO     | mean y: 2519874.632
[2025-10-12 22:53:46] 2025-10-13 02:52:45,187 | INFO     | -- intersect: -5438721444.306892
[2025-10-12 22:53:46] 2025-10-13 02:52:45,188 | INFO     | intersect: -5438721444.306892
[2025-10-12 22:53:46] 2025-10-13 02:52:45,188 | INFO     | chi2: 1.5742844864618741
[2025-10-12 22:53:46] 2025-10-13 02:52:45,188 | INFO     | current chi2=1.5742844864618741 (change=34.84054882972805 %)
[2025-10-12 22:53:46] 2025-10-13 02:52:45,188 | INFO     | sum of square deviations: 535786790.0
[2025-10-12 22:53:46] 2025-10-13 02:52:45,189 | INFO     | sum of deviations: 2059110357.4999993
[2025-10-12 22:53:46] 2025-10-13 02:52:45,189 | INFO     | mean x: 1760319688.5
[2025-10-12 22:53:46] 2025-10-13 02:52:45,189 | INFO     | mean y: 2520283.7916666665
[2025-10-12 22:53:46] 2025-10-13 02:52:45,189 | INFO     | -- intersect: -6762656780.58038
[2025-10-12 22:53:46] 2025-10-13 02:52:45,189 | INFO     | intersect: -6762656780.58038
[2025-10-12 22:53:46] 2025-10-13 02:52:45,190 | INFO     | chi2: 1.5759101067269912
[2025-10-12 22:53:46] 2025-10-13 02:52:45,190 | INFO     | current chi2=1.5759101067269912 (change=-0.10326089592425154 %)
[2025-10-12 22:53:46] 2025-10-13 02:52:45,190 | INFO     | right removable region: 119
[2025-10-12 22:53:46] 2025-10-13 02:52:45,190 | INFO     | sum of square deviations: 605592750.0
[2025-10-12 22:53:46] 2025-10-13 02:52:45,191 | INFO     | sum of deviations: -25891981676.0
[2025-10-12 22:53:46] 2025-10-13 02:52:45,191 | INFO     | mean x: 1760320146.0
[2025-10-12 22:53:46] 2025-10-13 02:52:45,191 | INFO     | mean y: 2538058.808
[2025-10-12 22:53:46] 2025-10-13 02:52:45,191 | INFO     | -- intersect: 75264629561.92729
[2025-10-12 22:53:46] 2025-10-13 02:52:45,191 | INFO     | intersect: 75264629561.92729
[2025-10-12 22:53:46] 2025-10-13 02:52:45,191 | INFO     | chi2: 1.035988091764236
[2025-10-12 22:53:46] 2025-10-13 02:52:45,192 | INFO     | current chi2=1.035988091764236 (change=57.12057378523259 %)
[2025-10-12 22:53:46] 2025-10-13 02:52:45,192 | INFO     | sum of square deviations: 535786790.0
[2025-10-12 22:53:46] 2025-10-13 02:52:45,192 | INFO     | sum of deviations: -27025207498.5
[2025-10-12 22:53:46] 2025-10-13 02:52:45,192 | INFO     | mean x: 1760320298.5
[2025-10-12 22:53:46] 2025-10-13 02:52:45,193 | INFO     | mean y: 2540458.575
[2025-10-12 22:53:46] 2025-10-13 02:52:45,193 | INFO     | -- intersect: 88793496522.99002
[2025-10-12 22:53:46] 2025-10-13 02:52:45,193 | INFO     | intersect: 88793496522.99002
[2025-10-12 22:53:46] 2025-10-13 02:52:45,193 | INFO     | chi2: 1.0022807726312255
[2025-10-12 22:53:46] 2025-10-13 02:52:45,193 | INFO     | current chi2=1.0022807726312255 (change=3.2536396316687886 %)
[2025-10-12 22:53:46] 2025-10-13 02:52:45,193 | INFO     | left removable region: 20
[2025-10-12 22:53:46] 2025-10-13 02:52:45,194 | INFO     | sum of square deviations: 300842850.0
[2025-10-12 22:53:46] 2025-10-13 02:52:45,194 | INFO     | sum of deviations: -10275428650.0
[2025-10-12 22:53:46] 2025-10-13 02:52:45,194 | INFO     | mean x: 1760320268.0
[2025-10-12 22:53:46] 2025-10-13 02:52:45,194 | INFO     | mean y: 2545655.757575758
[2025-10-12 22:53:46] 2025-10-13 02:52:45,195 | INFO     | -- intersect: 60127110075.29715
[2025-10-12 22:53:46] 2025-10-13 02:52:45,195 | INFO     | intersect: 60127110075.29715
[2025-10-12 22:53:46] 2025-10-13 02:52:45,195 | INFO     | chi2: 0.10084554533178204
[2025-10-12 22:53:46] 2025-10-13 02:52:45,195 | INFO     | -- intersect: 60127110075.29715
[2025-10-12 22:53:46] 2025-10-13 02:52:45,195 | INFO     | current memory leak: -34.16 B/s (using 99 data points, chi2=0.10)
[2025-10-12 22:53:46] 2025-10-13 02:52:45,195 | INFO     | could have reported an average CPU frequency of 1985 MHz (8 samples)
[2025-10-12 22:53:46] 2025-10-13 02:52:45,196 | INFO     | ..............................
[2025-10-12 22:53:46] 2025-10-13 02:52:45,196 | INFO     | . Timing measurements:
[2025-10-12 22:53:46] 2025-10-13 02:52:45,196 | INFO     | . get job = 0 s
[2025-10-12 22:53:46] 2025-10-13 02:52:45,196 | INFO     | . initial setup = 2 s
[2025-10-12 22:53:46] 2025-10-13 02:52:45,196 | INFO     | . payload setup = 8 s
[2025-10-12 22:53:46] 2025-10-13 02:52:45,196 | INFO     | . stage-in = 0 s
[2025-10-12 22:53:46] 2025-10-13 02:52:45,196 | INFO     | . payload execution = 7900 s
[2025-10-12 22:53:46] 2025-10-13 02:52:45,196 | INFO     | . stage-out = 0 s
[2025-10-12 22:53:46] 2025-10-13 02:52:45,197 | INFO     | . log creation = 0 s
[2025-10-12 22:53:46] 2025-10-13 02:52:45,197 | INFO     | ..............................
[2025-10-12 22:53:46] 2025-10-13 02:52:45,288 | INFO     | 
[2025-10-12 22:53:46] 2025-10-13 02:52:45,288 | INFO     | job summary report
[2025-10-12 22:53:46] 2025-10-13 02:52:45,288 | INFO     | --------------------------------------------------
[2025-10-12 22:53:46] 2025-10-13 02:52:45,289 | INFO     | PanDA job id: 6840749494
[2025-10-12 22:53:46] 2025-10-13 02:52:45,289 | INFO     | task id: 46676269
[2025-10-12 22:53:46] 2025-10-13 02:52:45,289 | INFO     | errors: (none)
[2025-10-12 22:53:46] 2025-10-13 02:52:45,289 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 22:53:46] 2025-10-13 02:52:45,289 | INFO     | pilot state: finished 
[2025-10-12 22:53:46] 2025-10-13 02:52:45,289 | INFO     | transexitcode: 0
[2025-10-12 22:53:46] 2025-10-13 02:52:45,290 | INFO     | exeerrorcode: 0
[2025-10-12 22:53:46] 2025-10-13 02:52:45,290 | INFO     | exeerrordiag: 
[2025-10-12 22:53:46] 2025-10-13 02:52:45,290 | INFO     | exitcode: 0
[2025-10-12 22:53:46] 2025-10-13 02:52:45,290 | INFO     | exitmsg: OK
[2025-10-12 22:53:46] 2025-10-13 02:52:45,290 | INFO     | cpuconsumptiontime: 57481 s
[2025-10-12 22:53:46] 2025-10-13 02:52:45,290 | INFO     | nevents: 400
[2025-10-12 22:53:46] 2025-10-13 02:52:45,291 | INFO     | neventsw: 0
[2025-10-12 22:53:46] 2025-10-13 02:52:45,291 | INFO     | pid: 30059
[2025-10-12 22:53:46] 2025-10-13 02:52:45,291 | INFO     | pgrp: 30059
[2025-10-12 22:53:46] 2025-10-13 02:52:45,291 | INFO     | corecount: 8
[2025-10-12 22:53:46] 2025-10-13 02:52:45,291 | INFO     | event service: False
[2025-10-12 22:53:46] 2025-10-13 02:52:45,292 | INFO     | sizes: {0: 2348686, 1: 2348885, 7: 2349147, 11: 2349175, 7913: 2376833, 7914: 2386015, 7921: 2386153}
[2025-10-12 22:53:46] 2025-10-13 02:52:45,292 | INFO     | --------------------------------------------------
[2025-10-12 22:53:46] 2025-10-13 02:52:45,292 | INFO     | 
[2025-10-12 22:53:46] 2025-10-13 02:52:45,292 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 22:53:46] 2025-10-13 02:52:45,320 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 22:53:46] 2025-10-13 02:52:45,321 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 22:53:46] 2025-10-13 02:52:45,321 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 22:53:46] 2025-10-13 02:52:45,321 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 22:53:46] 2025-10-13 02:52:45,321 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 22:53:46] 2025-10-13 02:52:45,321 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 22:53:46] 2025-10-13 02:52:45,322 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 22:53:46] 2025-10-13 02:52:45,322 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 22:53:46] 2025-10-13 02:52:45,322 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 22:53:46] 2025-10-13 02:52:45,322 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 22:53:46] 2025-10-13 02:52:45,322 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 22:53:46] 2025-10-13 02:52:45,322 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 22:53:46] 2025-10-13 02:52:45,323 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 22:53:46] 2025-10-13 02:52:45,323 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 22:53:46] 2025-10-13 02:52:45,323 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 22:53:46] 2025-10-13 02:52:45,323 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 22:53:46] 2025-10-13 02:52:45,323 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 22:53:46] 2025-10-13 02:52:45,323 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 22:53:46] 2025-10-13 02:52:45,324 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 22:53:46] 2025-10-13 02:52:45,324 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 22:53:46] 2025-10-13 02:52:45,324 | INFO     | job 6840749494 has completed (purged errors)
[2025-10-12 22:53:46] 2025-10-13 02:52:45,324 | INFO     | overall cleanup function is called
[2025-10-12 22:53:46] 2025-10-13 02:52:46,332 | INFO     | --- collectZombieJob: --- 10, [30059]
[2025-10-12 22:53:46] 2025-10-13 02:52:46,333 | INFO     | zombie collector waiting for pid 30059
[2025-10-12 22:53:46] 2025-10-13 02:52:46,333 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 22:53:46] 2025-10-13 02:52:46,333 | INFO     | collected zombie processes
[2025-10-12 22:53:46] 2025-10-13 02:52:46,333 | INFO     | will attempt to kill all subprocesses of pid=30059
[2025-10-12 22:53:46] 2025-10-13 02:52:46,426 | INFO     | process IDs to be killed: [30059] (in reverse order)
[2025-10-12 22:53:46] 2025-10-13 02:52:46,493 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 22:53:46] 2025-10-13 02:52:46,494 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 22:53:46] 2025-10-13 02:52:46,497 | INFO     | did not find any defunct processes belonging to 30059
[2025-10-12 22:53:46] 2025-10-13 02:52:46,499 | INFO     | did not find any defunct processes belonging to 30059
[2025-10-12 22:53:46] 2025-10-13 02:52:46,500 | INFO     | ready for new job
[2025-10-12 22:53:46] 2025-10-13 02:52:46,500 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 22:53:46] 2025-10-13 02:52:46,501 | INFO     | ***************************************
[2025-10-12 22:53:46] 2025-10-13 02:52:46,502 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 22:53:46] 2025-10-13 02:52:46,502 | INFO     | ***************************************
[2025-10-12 22:53:46] 2025-10-13 02:52:46,502 | INFO     | 
[2025-10-12 22:53:46] 2025-10-13 02:52:46,502 | INFO     | architecture information:
[2025-10-12 22:53:46] 2025-10-13 02:52:46,503 | INFO     | executing command: cat /etc/os-release
[2025-10-12 22:53:46] 2025-10-13 02:52:46,521 | INFO     | cat /etc/os-release:
[2025-10-12 22:53:46] NAME="CentOS Linux"
[2025-10-12 22:53:46] VERSION="7 (Core)"
[2025-10-12 22:53:46] ID="centos"
[2025-10-12 22:53:46] ID_LIKE="rhel fedora"
[2025-10-12 22:53:46] VERSION_ID="7"
[2025-10-12 22:53:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 22:53:46] ANSI_COLOR="0;31"
[2025-10-12 22:53:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 22:53:46] HOME_URL="https://www.centos.org/"
[2025-10-12 22:53:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 22:53:46] 
[2025-10-12 22:53:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 22:53:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 22:53:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 22:53:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 22:53:46] 
[2025-10-12 22:53:46] 2025-10-13 02:52:46,521 | INFO     | ***************************************
[2025-10-12 22:53:46] 2025-10-13 02:52:47,024 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 22:53:46] 2025-10-13 02:52:47,046 | INFO     | sufficient remaining disk space (18580766720 B)
[2025-10-12 22:53:46] 2025-10-13 02:52:47,046 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 22:53:46] 2025-10-13 02:52:47,046 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 22:53:46] 2025-10-13 02:52:47,047 | INFO     | update_server=False
[2025-10-12 22:53:46] 2025-10-13 02:52:47,047 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 22:53:46] 2025-10-13 02:52:47,047 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:53:46] 2025-10-13 02:52:47,048 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:53:46] 2025-10-13 02:52:47,048 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 22:53:46] 2025-10-13 02:52:47,048 | INFO     | aborting loop
[2025-10-12 22:53:46] 2025-10-13 02:52:47,069 | INFO     | all data control threads have been joined
[2025-10-12 22:53:46] 2025-10-13 02:52:47,279 | INFO     | all job control threads have been joined
[2025-10-12 22:53:46] 2025-10-13 02:52:48,052 | INFO     | [job] retrieve thread has finished
[2025-10-12 22:53:46] 2025-10-13 02:52:48,053 | INFO     | [job] queue monitor thread has finished
[2025-10-12 22:53:46] 2025-10-13 02:52:48,054 | INFO     | [job] job monitor thread has finished
[2025-10-12 22:53:46] 2025-10-13 02:52:48,077 | INFO     | [data] control thread has finished
[2025-10-12 22:53:46] 2025-10-13 02:52:48,249 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 22:53:46] 2025-10-13 02:52:48,285 | INFO     | [job] control thread has finished
[2025-10-12 22:53:46] 2025-10-13 02:52:48,443 | INFO     | [payload] failed_post thread has finished
[2025-10-12 22:53:46] 2025-10-13 02:52:48,461 | INFO     | all payload control threads have been joined
[2025-10-12 22:53:46] 2025-10-13 02:52:48,644 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 22:53:46] 2025-10-13 02:52:48,650 | INFO     | [data] copytool_in thread has finished
[2025-10-12 22:53:46] 2025-10-13 02:52:48,742 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 22:53:46] 2025-10-13 02:52:48,858 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 22:53:46] 2025-10-13 02:52:49,053 | INFO     | [data] copytool_out thread has finished
[2025-10-12 22:53:46] 2025-10-13 02:52:49,164 | INFO     | [job] validate thread has finished
[2025-10-12 22:53:46] 2025-10-13 02:52:49,467 | INFO     | [payload] control thread has finished
[2025-10-12 22:53:46] 2025-10-13 02:52:49,470 | INFO     | [payload] validate_post thread has finished
[2025-10-12 22:53:46] 2025-10-13 02:52:52,865 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 22:53:46] 2025-10-13 02:52:57,975 | INFO     | job.realtimelogging is not enabled
[2025-10-12 22:53:46] 2025-10-13 02:52:58,980 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 22:53:46] 2025-10-13 02:53:17,242 | INFO     | PID=23572 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 22:53:46] 2025-10-13 02:53:17,242 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 22:53:46] 2025-10-13 02:53:17,242 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 22:53:46] 2025-10-13 02:53:17,242 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 22:53:46] 2025-10-13 02:53:38,910 | INFO     | [monitor] cgroup control has ended
[2025-10-12 22:53:46] 2025-10-13 02:53:40,882 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139931128780608)>', '<ExcThread(monitor, started 139930546194176)>']
[2025-10-12 22:53:46] 2025-10-13 02:53:41,363 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 22:53:46] 2025-10-13 02:53:41,363 | INFO     | [monitor] control thread has ended
[2025-10-12 22:53:46] 2025-10-13 02:53:45,908 | INFO     | all workflow threads have been joined
[2025-10-12 22:53:46] 2025-10-13 02:53:45,908 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 22:53:46] 2025-10-13 02:53:45,908 | INFO     | traces error code: 0
[2025-10-12 22:53:46] 2025-10-13 02:53:45,909 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 22:53:46] 2025-10-13 02:53:46,032 [wrapper] ==== pilot stdout END ====
[2025-10-12 22:53:46] 2025-10-13 02:53:46,039 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 22:53:46] 2025-10-13 02:53:46,044 [wrapper] pilotpid: 23572
[2025-10-12 22:53:46] 2025-10-13 02:53:46,049 [wrapper] Pilot exit status: 0
[2025-10-12 22:53:46] 2025-10-13 02:53:46,071 [wrapper] pandaids: 6840749494
[2025-10-12 22:53:46] 2025-10-13 02:53:46,127 [wrapper] cleanup supervisor_pilot 21545 23573
[2025-10-12 22:53:46] 2025-10-13 02:53:46,132 [wrapper] Test setup, not cleaning
[2025-10-12 22:53:46] 2025-10-13 02:53:46,138 [wrapper] apfmon messages muted
[2025-10-12 22:53:46] 2025-10-13 02:53:46,142 [wrapper] ==== wrapper stdout END ====
[2025-10-12 22:53:46] 2025-10-13 02:53:46,147 [wrapper] ==== wrapper stderr END ====
[2025-10-12 22:53:46]  *** Error codes and diagnostics ***
[2025-10-12 22:53:46]     "exeErrorCode": 0,
[2025-10-12 22:53:46]     "exeErrorDiag": "",
[2025-10-12 22:53:46]     "pilotErrorCode": 0,
[2025-10-12 22:53:46]     "pilotErrorDiag": "",
[2025-10-12 22:53:46]  *** Listing of results directory ***
[2025-10-12 22:53:46] total 413728
[2025-10-12 22:53:46] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 16:23 pilot3.tar.gz
[2025-10-12 22:53:46] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 16:38 queuedata.json
[2025-10-12 22:53:46] -rwx------ 1 boincer umatlas     36292 Oct 12 16:38 runpilot2-wrapper.sh
[2025-10-12 22:53:46] -rw-r--r-- 1 boincer umatlas       100 Oct 12 20:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 22:53:46] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 20:40 run_atlas
[2025-10-12 22:53:46] -rw-r--r-- 1 boincer umatlas       105 Oct 12 20:40 job.xml
[2025-10-12 22:53:46] -rw-r--r-- 2 boincer umatlas 220405059 Oct 12 20:40 EVNT.46676267._004856.pool.root.1
[2025-10-12 22:53:46] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 20:40 start_atlas.sh
[2025-10-12 22:53:46] drwxrwx--x 2 boincer umatlas      4096 Oct 12 20:40 shared
[2025-10-12 22:53:46] -rw-r--r-- 2 boincer umatlas    569682 Oct 12 20:40 input.tar.gz
[2025-10-12 22:53:46] -rw-r--r-- 1 boincer umatlas         0 Oct 12 20:40 boinc_lockfile
[2025-10-12 22:53:46] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 20:40 pandaJob.out
[2025-10-12 22:53:46] -rw------- 1 boincer umatlas    975603 Oct 12 20:40 agis_schedconf.cvmfs.json
[2025-10-12 22:53:46] -rw------- 1 boincer umatlas   1560580 Oct 12 20:40 agis_ddmendpoints.agis.ALL.json
[2025-10-12 22:53:46] drwx------ 5 boincer umatlas      4096 Oct 12 20:40 pilot3
[2025-10-12 22:53:46] -rw-r--r-- 1 boincer umatlas      5910 Oct 12 22:48 init_data.xml
[2025-10-12 22:53:46] -rw------- 1 boincer umatlas 196366020 Oct 12 22:52 HITS.46676269._088926.pool.root.1
[2025-10-12 22:53:46] -rw-r--r-- 1 boincer umatlas       529 Oct 12 22:52 boinc_task_state.xml
[2025-10-12 22:53:46] -rw------- 1 boincer umatlas        95 Oct 12 22:52 pilot_heartbeat.json
[2025-10-12 22:53:46] -rw------- 1 boincer umatlas      1050 Oct 12 22:52 memory_monitor_summary.json
[2025-10-12 22:53:46] -rw------- 1 boincer umatlas    379791 Oct 12 22:52 log.46676269._088926.job.log.tgz.1
[2025-10-12 22:53:46] -rw------- 1 boincer umatlas      7854 Oct 12 22:52 heartbeat.json
[2025-10-12 22:53:46] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 22:53 boinc_mmap_file
[2025-10-12 22:53:46] -rw-r--r-- 1 boincer umatlas        27 Oct 12 22:53 wrapper_checkpoint.txt
[2025-10-12 22:53:46] -rw------- 1 boincer umatlas      4818 Oct 12 22:53 pilotlog.txt
[2025-10-12 22:53:46] -rw------- 1 boincer umatlas   1113402 Oct 12 22:53 log.46676269._088926.job.log.1
[2025-10-12 22:53:46] -rw------- 1 boincer umatlas       357 Oct 12 22:53 output.list
[2025-10-12 22:53:46] -rw-r--r-- 1 boincer umatlas       620 Oct 12 22:53 runtime_log
[2025-10-12 22:53:46] -rw------- 1 boincer umatlas   1515520 Oct 12 22:53 result.tar.gz
[2025-10-12 22:53:46] -rw-r--r-- 1 boincer umatlas      8703 Oct 12 22:53 runtime_log.err
[2025-10-12 22:53:46] -rw------- 1 boincer umatlas       659 Oct 12 22:53 KltNDmh0HS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmFzUMDm8SixOn.diag
[2025-10-12 22:53:46] -rw-r--r-- 1 boincer umatlas     20812 Oct 12 22:53 stderr.txt
[2025-10-12 22:53:46] HITS file was successfully produced:
[2025-10-12 22:53:46] -rw------- 1 boincer umatlas 196366020 Oct 12 22:52 shared/HITS.pool.root.1
[2025-10-12 22:53:46]  *** Contents of shared directory: ***
[2025-10-12 22:53:46] total 409064
[2025-10-12 22:53:46] -rw-r--r-- 2 boincer umatlas 220405059 Oct 12 20:40 ATLAS.root_0
[2025-10-12 22:53:46] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 20:40 start_atlas.sh
[2025-10-12 22:53:46] -rw-r--r-- 2 boincer umatlas    569682 Oct 12 20:40 input.tar.gz
[2025-10-12 22:53:46] -rw------- 1 boincer umatlas 196366020 Oct 12 22:52 HITS.pool.root.1
[2025-10-12 22:53:46] -rw------- 1 boincer umatlas   1515520 Oct 12 22:53 result.tar.gz
22:53:48 (18989): run_atlas exited; CPU time 57423.248907
22:53:48 (18989): called boinc_finish(0)

</stderr_txt>
]]>

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