Stderr output

<core_client_version>7.4.25</core_client_version>
<![CDATA[
<stderr_txt>
02:21:10 (4097): wrapper (7.7.26015): starting
02:21:10 (4097): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 02:21:10] Arguments: --nthreads 4
[2025-10-13 02:21:10] Threads: 4
[2025-10-13 02:21:10] Checking for CVMFS
[2025-10-13 02:21:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 02:21:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 02:21:23] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 02:21:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 02:21:23] 2.11.5.0 4319 0 25164 151643 3 1 2197303 4194305 0 130560 0 0 0.000 1291 512 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.100.152:3128 1
[2025-10-13 02:21:23] CVMFS is ok
[2025-10-13 02:21:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 02:21:23] Checking for apptainer binary...
[2025-10-13 02:21:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 02:21:23] Running /usr/bin/apptainer --version
[2025-10-13 02:21:24] apptainer version 1.0.3
[2025-10-13 02:21:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 02:21:25] TeeC21
[2025-10-13 02:21:25] apptainer works
[2025-10-13 02:21:25] Set ATHENA_PROC_NUMBER=4
[2025-10-13 02:21:25] Set ATHENA_CORE_NUMBER=4
[2025-10-13 02:21:25] Starting ATLAS job with PandaID=6840428954
[2025-10-13 02:21:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/m/BOINC/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 05:46:19]  *** The last 200 lines of the pilot log: ***
[2025-10-13 05:46:19] 2025-10-13 04:45:25,143 | INFO     | time since job start (12210s) is within the limit (172800.0s)
[2025-10-13 05:46:19] 2025-10-13 04:45:26,612 | INFO     | monitor loop #923: job 0:6840428954 is in state 'finished'
[2025-10-13 05:46:19] 2025-10-13 04:45:26,612 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 05:46:19] 2025-10-13 04:45:27,115 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 05:46:19] 2025-10-13 04:45:27,115 | INFO     | found 2 cores (2 cores per socket, 1 socket) HT, CPU MHz: 3329.0150000000003
[2025-10-13 05:46:19] 2025-10-13 04:45:27,116 | INFO     | using path: /home/m/BOINC/slots/0/PanDA_Pilot-6840428954/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 05:46:19] 2025-10-13 04:45:27,116 | INFO     | extracted standard info from prmon json
[2025-10-13 05:46:19] 2025-10-13 04:45:27,116 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 05:46:19] 2025-10-13 04:45:27,116 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 05:46:19] 2025-10-13 04:45:27,116 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 05:46:19] 2025-10-13 04:45:27,117 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 05:46:19] 2025-10-13 04:45:27,118 | INFO     | fitting pss+swap vs Time
[2025-10-13 05:46:19] 2025-10-13 04:45:27,118 | INFO     | sum of square deviations: 2443580700.0
[2025-10-13 05:46:19] 2025-10-13 04:45:27,119 | INFO     | sum of deviations: -42042585188.0
[2025-10-13 05:46:19] 2025-10-13 04:45:27,119 | INFO     | mean x: 1760324575.0
[2025-10-13 05:46:19] 2025-10-13 04:45:27,119 | INFO     | mean y: 2414014.497487437
[2025-10-13 05:46:19] 2025-10-13 04:45:27,119 | INFO     | -- intersect: 30289359685.236904
[2025-10-13 05:46:19] 2025-10-13 04:45:27,119 | INFO     | intersect: 30289359685.236904
[2025-10-13 05:46:19] 2025-10-13 04:45:27,119 | INFO     | chi2: 2.3118492085142184
[2025-10-13 05:46:19] 2025-10-13 04:45:27,120 | INFO     | sum of square deviations: 2263977332.5
[2025-10-13 05:46:19] 2025-10-13 04:45:27,120 | INFO     | sum of deviations: -40371106040.5
[2025-10-13 05:46:19] 2025-10-13 04:45:27,120 | INFO     | mean x: 1760324422.5
[2025-10-13 05:46:19] 2025-10-13 04:45:27,120 | INFO     | mean y: 2415434.036082474
[2025-10-13 05:46:19] 2025-10-13 04:45:27,120 | INFO     | -- intersect: 31392413428.386333
[2025-10-13 05:46:19] 2025-10-13 04:45:27,120 | INFO     | intersect: 31392413428.386333
[2025-10-13 05:46:19] 2025-10-13 04:45:27,120 | INFO     | chi2: 2.305775751868559
[2025-10-13 05:46:19] 2025-10-13 04:45:27,121 | INFO     | current chi2=2.305775751868559 (change=0.26270989575321724 %)
[2025-10-13 05:46:19] 2025-10-13 04:45:27,121 | INFO     | right removable region: 193
[2025-10-13 05:46:19] 2025-10-13 04:45:27,121 | INFO     | sum of square deviations: 2263977332.5
[2025-10-13 05:46:19] 2025-10-13 04:45:27,121 | INFO     | sum of deviations: -77736668088.0
[2025-10-13 05:46:19] 2025-10-13 04:45:27,121 | INFO     | mean x: 1760324727.5
[2025-10-13 05:46:19] 2025-10-13 04:45:27,121 | INFO     | mean y: 2444079.845360825
[2025-10-13 05:46:19] 2025-10-13 04:45:27,121 | INFO     | -- intersect: 60445531165.73011
[2025-10-13 05:46:19] 2025-10-13 04:45:27,121 | INFO     | intersect: 60445531165.73011
[2025-10-13 05:46:19] 2025-10-13 04:45:27,122 | INFO     | chi2: 0.4587924927114503
[2025-10-13 05:46:19] 2025-10-13 04:45:27,122 | INFO     | current chi2=0.4587924927114503 (change=80.15473971997042 %)
[2025-10-13 05:46:19] 2025-10-13 04:45:27,122 | INFO     | sum of square deviations: 2093397390.0
[2025-10-13 05:46:19] 2025-10-13 04:45:27,122 | INFO     | sum of deviations: -70197592261.0
[2025-10-13 05:46:19] 2025-10-13 04:45:27,122 | INFO     | mean x: 1760324880.0
[2025-10-13 05:46:19] 2025-10-13 04:45:27,122 | INFO     | mean y: 2437319.3544973545
[2025-10-13 05:46:19] 2025-10-13 04:45:27,122 | INFO     | -- intersect: 59031157219.0835
[2025-10-13 05:46:19] 2025-10-13 04:45:27,122 | INFO     | intersect: 59031157219.0835
[2025-10-13 05:46:19] 2025-10-13 04:45:27,122 | INFO     | chi2: 0.45328244131348705
[2025-10-13 05:46:19] 2025-10-13 04:45:27,123 | INFO     | current chi2=0.45328244131348705 (change=1.2009898778855317 %)
[2025-10-13 05:46:19] 2025-10-13 04:45:27,123 | INFO     | left removable region: 20
[2025-10-13 05:46:19] 2025-10-13 04:45:27,123 | INFO     | sum of square deviations: 1605470102.0
[2025-10-13 05:46:19] 2025-10-13 04:45:27,123 | INFO     | sum of deviations: -49668337318.0
[2025-10-13 05:46:19] 2025-10-13 04:45:27,123 | INFO     | mean x: 1760325002.0
[2025-10-13 05:46:19] 2025-10-13 04:45:27,123 | INFO     | mean y: 2421429.0
[2025-10-13 05:46:19] 2025-10-13 04:45:27,123 | INFO     | -- intersect: 54461495988.98518
[2025-10-13 05:46:19] 2025-10-13 04:45:27,123 | INFO     | intersect: 54461495988.98518
[2025-10-13 05:46:19] 2025-10-13 04:45:27,123 | INFO     | chi2: 0.40876435022945823
[2025-10-13 05:46:19] 2025-10-13 04:45:27,123 | INFO     | -- intersect: 54461495988.98518
[2025-10-13 05:46:19] 2025-10-13 04:45:27,124 | INFO     | current memory leak: -30.94 B/s (using 173 data points, chi2=0.41)
[2025-10-13 05:46:19] 2025-10-13 04:45:27,124 | INFO     | could have reported an average CPU frequency of 3054 MHz (10 samples)
[2025-10-13 05:46:19] 2025-10-13 04:45:27,124 | INFO     | ..............................
[2025-10-13 05:46:19] 2025-10-13 04:45:27,124 | INFO     | . Timing measurements:
[2025-10-13 05:46:19] 2025-10-13 04:45:27,124 | INFO     | . get job = 0 s
[2025-10-13 05:46:19] 2025-10-13 04:45:27,124 | INFO     | . initial setup = 12 s
[2025-10-13 05:46:19] 2025-10-13 04:45:27,124 | INFO     | . payload setup = 5 s
[2025-10-13 05:46:19] 2025-10-13 04:45:27,124 | INFO     | . stage-in = 0 s
[2025-10-13 05:46:19] 2025-10-13 04:45:27,124 | INFO     | . payload execution = 12132 s
[2025-10-13 05:46:19] 2025-10-13 04:45:27,124 | INFO     | . stage-out = 11 s
[2025-10-13 05:46:19] 2025-10-13 04:45:27,124 | INFO     | . log creation = 0 s
[2025-10-13 05:46:19] 2025-10-13 04:45:27,124 | INFO     | ..............................
[2025-10-13 05:46:19] 2025-10-13 04:45:27,154 | INFO     | time since job start (12212s) is within the limit (172800.0s)
[2025-10-13 05:46:19] 2025-10-13 04:45:27,591 | INFO     | 
[2025-10-13 05:46:19] 2025-10-13 04:45:27,591 | INFO     | job summary report
[2025-10-13 05:46:19] 2025-10-13 04:45:27,591 | INFO     | --------------------------------------------------
[2025-10-13 05:46:19] 2025-10-13 04:45:27,592 | INFO     | PanDA job id: 6840428954
[2025-10-13 05:46:19] 2025-10-13 04:45:27,592 | INFO     | task id: 46676269
[2025-10-13 05:46:19] 2025-10-13 04:45:27,592 | INFO     | errors: (none)
[2025-10-13 05:46:19] 2025-10-13 04:45:27,592 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 05:46:19] 2025-10-13 04:45:27,592 | INFO     | pilot state: finished 
[2025-10-13 05:46:19] 2025-10-13 04:45:27,592 | INFO     | transexitcode: 0
[2025-10-13 05:46:19] 2025-10-13 04:45:27,592 | INFO     | exeerrorcode: 0
[2025-10-13 05:46:19] 2025-10-13 04:45:27,593 | INFO     | exeerrordiag: 
[2025-10-13 05:46:19] 2025-10-13 04:45:27,593 | INFO     | exitcode: 0
[2025-10-13 05:46:19] 2025-10-13 04:45:27,593 | INFO     | exitmsg: OK
[2025-10-13 05:46:19] 2025-10-13 04:45:27,593 | INFO     | cpuconsumptiontime: 46798 s
[2025-10-13 05:46:19] 2025-10-13 04:45:27,593 | INFO     | nevents: 400
[2025-10-13 05:46:19] 2025-10-13 04:45:27,593 | INFO     | neventsw: 0
[2025-10-13 05:46:19] 2025-10-13 04:45:27,593 | INFO     | pid: 14786
[2025-10-13 05:46:19] 2025-10-13 04:45:27,594 | INFO     | pgrp: 14786
[2025-10-13 05:46:19] 2025-10-13 04:45:27,594 | INFO     | corecount: 4
[2025-10-13 05:46:19] 2025-10-13 04:45:27,594 | INFO     | event service: False
[2025-10-13 05:46:19] 2025-10-13 04:45:27,594 | INFO     | sizes: {0: 2348856, 2: 2349118, 11: 2349146, 12141: 2378899, 12153: 2387895, 12155: 2387951, 12199: 2388273}
[2025-10-13 05:46:19] 2025-10-13 04:45:27,594 | INFO     | --------------------------------------------------
[2025-10-13 05:46:19] 2025-10-13 04:45:27,594 | INFO     | 
[2025-10-13 05:46:19] 2025-10-13 04:45:27,594 | INFO     | executing command: ls -lF /home/m/BOINC/slots/0
[2025-10-13 05:46:19] 2025-10-13 04:45:27,607 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 05:46:19] 2025-10-13 04:45:27,608 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 05:46:19] 2025-10-13 04:45:27,608 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 05:46:19] 2025-10-13 04:45:27,608 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 05:46:19] 2025-10-13 04:45:27,608 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 05:46:19] 2025-10-13 04:45:27,608 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 05:46:19] 2025-10-13 04:45:27,608 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 05:46:19] 2025-10-13 04:45:27,608 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 05:46:19] 2025-10-13 04:45:27,608 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 05:46:19] 2025-10-13 04:45:27,608 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 05:46:19] 2025-10-13 04:45:27,608 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 05:46:19] 2025-10-13 04:45:27,608 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 05:46:19] 2025-10-13 04:45:27,608 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 05:46:19] 2025-10-13 04:45:27,608 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 05:46:19] 2025-10-13 04:45:27,608 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 05:46:19] 2025-10-13 04:45:27,609 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 05:46:19] 2025-10-13 04:45:27,609 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 05:46:19] 2025-10-13 04:45:27,609 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 05:46:19] 2025-10-13 04:45:27,609 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 05:46:19] 2025-10-13 04:45:27,609 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 05:46:19] 2025-10-13 04:45:27,609 | INFO     | job 6840428954 has completed (purged errors)
[2025-10-13 05:46:19] 2025-10-13 04:45:27,609 | INFO     | overall cleanup function is called
[2025-10-13 05:46:19] 2025-10-13 04:45:28,613 | INFO     | --- collectZombieJob: --- 10, [14786]
[2025-10-13 05:46:19] 2025-10-13 04:45:28,613 | INFO     | zombie collector waiting for pid 14786
[2025-10-13 05:46:19] 2025-10-13 04:45:28,614 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 05:46:19] 2025-10-13 04:45:28,614 | INFO     | collected zombie processes
[2025-10-13 05:46:19] 2025-10-13 04:45:28,614 | INFO     | will attempt to kill all subprocesses of pid=14786
[2025-10-13 05:46:19] 2025-10-13 04:45:28,661 | INFO     | process IDs to be killed: [14786] (in reverse order)
[2025-10-13 05:46:19] 2025-10-13 04:45:28,680 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 05:46:19] 2025-10-13 04:45:28,680 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 05:46:19] 2025-10-13 04:45:28,681 | INFO     | did not find any defunct processes belonging to 14786
[2025-10-13 05:46:19] 2025-10-13 04:45:28,682 | INFO     | did not find any defunct processes belonging to 14786
[2025-10-13 05:46:19] 2025-10-13 04:45:28,683 | INFO     | ready for new job
[2025-10-13 05:46:19] 2025-10-13 04:45:28,683 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 05:46:19] 2025-10-13 04:45:28,683 | INFO     | ***************************************
[2025-10-13 05:46:19] 2025-10-13 04:45:28,684 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 05:46:19] 2025-10-13 04:45:28,684 | INFO     | ***************************************
[2025-10-13 05:46:19] 2025-10-13 04:45:28,684 | INFO     | 
[2025-10-13 05:46:19] 2025-10-13 04:45:28,700 | INFO     | architecture information:
[2025-10-13 05:46:19] 2025-10-13 04:45:28,701 | INFO     | executing command: cat /etc/os-release
[2025-10-13 05:46:19] 2025-10-13 04:45:28,709 | INFO     | cat /etc/os-release:
[2025-10-13 05:46:19] NAME="CentOS Linux"
[2025-10-13 05:46:19] VERSION="7 (Core)"
[2025-10-13 05:46:19] ID="centos"
[2025-10-13 05:46:19] ID_LIKE="rhel fedora"
[2025-10-13 05:46:19] VERSION_ID="7"
[2025-10-13 05:46:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 05:46:19] ANSI_COLOR="0;31"
[2025-10-13 05:46:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 05:46:19] HOME_URL="https://www.centos.org/"
[2025-10-13 05:46:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 05:46:19] 
[2025-10-13 05:46:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 05:46:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 05:46:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 05:46:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 05:46:19] 
[2025-10-13 05:46:19] 2025-10-13 04:45:28,709 | INFO     | ***************************************
[2025-10-13 05:46:19] 2025-10-13 04:45:29,212 | INFO     | executing command: df -mP /home/m/BOINC/slots/0
[2025-10-13 05:46:19] 2025-10-13 04:45:29,219 | INFO     | sufficient remaining disk space (414615339008 B)
[2025-10-13 05:46:19] 2025-10-13 04:45:29,219 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 05:46:19] 2025-10-13 04:45:29,219 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 05:46:19] 2025-10-13 04:45:29,219 | INFO     | update_server=False
[2025-10-13 05:46:19] 2025-10-13 04:45:29,219 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 05:46:19] 2025-10-13 04:45:29,219 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 05:46:19] 2025-10-13 04:45:29,306 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 05:46:19] 2025-10-13 04:45:29,884 | INFO     | all payload control threads have been joined
[2025-10-13 05:46:19] 2025-10-13 04:45:30,121 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:46:19] 2025-10-13 04:45:30,122 | INFO     | aborting loop
[2025-10-13 05:46:19] 2025-10-13 04:45:30,125 | INFO     | all data control threads have been joined
[2025-10-13 05:46:19] 2025-10-13 04:45:30,225 | INFO     | [job] retrieve thread has finished
[2025-10-13 05:46:19] 2025-10-13 04:45:30,372 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 05:46:19] 2025-10-13 04:45:30,373 | INFO     | [job] validate thread has finished
[2025-10-13 05:46:19] 2025-10-13 04:45:30,425 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 05:46:19] 2025-10-13 04:45:30,546 | INFO     | all job control threads have been joined
[2025-10-13 05:46:19] 2025-10-13 04:45:30,612 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 05:46:19] 2025-10-13 04:45:30,843 | INFO     | [payload] validate_post thread has finished
[2025-10-13 05:46:19] 2025-10-13 04:45:30,890 | INFO     | [payload] control thread has finished
[2025-10-13 05:46:19] 2025-10-13 04:45:31,108 | INFO     | [data] copytool_in thread has finished
[2025-10-13 05:46:19] 2025-10-13 04:45:31,127 | INFO     | [job] job monitor thread has finished
[2025-10-13 05:46:19] 2025-10-13 04:45:31,128 | INFO     | [data] control thread has finished
[2025-10-13 05:46:19] 2025-10-13 04:45:31,225 | INFO     | [data] copytool_out thread has finished
[2025-10-13 05:46:19] 2025-10-13 04:45:31,483 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 05:46:19] 2025-10-13 04:45:31,552 | INFO     | [job] control thread has finished
[2025-10-13 05:46:19] 2025-10-13 04:45:31,588 | INFO     | [payload] failed_post thread has finished
[2025-10-13 05:46:19] 2025-10-13 04:45:32,178 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:46:19] 2025-10-13 04:45:33,184 | INFO     | [job] queue monitor thread has finished
[2025-10-13 05:46:19] 2025-10-13 04:45:33,312 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 05:46:19] 2025-10-13 04:46:00,298 | INFO     | PID=8416 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-13 05:46:19] 2025-10-13 04:46:00,298 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 05:46:19] 2025-10-13 04:46:00,298 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 05:46:19] 2025-10-13 04:46:00,298 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 05:46:19] 2025-10-13 04:46:14,587 | INFO     | [monitor] cgroup control has ended
[2025-10-13 05:46:19] 2025-10-13 04:46:14,755 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139811581339456)>', '<ExcThread(monitor, started 139811268564736)>']
[2025-10-13 05:46:19] 2025-10-13 04:46:15,375 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 05:46:19] 2025-10-13 04:46:15,375 | INFO     | [monitor] control thread has ended
[2025-10-13 05:46:19] 2025-10-13 04:46:19,781 | INFO     | all workflow threads have been joined
[2025-10-13 05:46:19] 2025-10-13 04:46:19,782 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 05:46:19] 2025-10-13 04:46:19,782 | INFO     | traces error code: 0
[2025-10-13 05:46:19] 2025-10-13 04:46:19,782 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 05:46:19] 2025-10-13 04:46:19,861 [wrapper] ==== pilot stdout END ====
[2025-10-13 05:46:19] 2025-10-13 04:46:19,862 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 05:46:19] 2025-10-13 04:46:19,864 [wrapper] pilotpid: 8416
[2025-10-13 05:46:19] 2025-10-13 04:46:19,865 [wrapper] Pilot exit status: 0
[2025-10-13 05:46:19] 2025-10-13 04:46:19,872 [wrapper] pandaids: 6840428954
[2025-10-13 05:46:19] 2025-10-13 04:46:19,884 [wrapper] cleanup supervisor_pilot  4578 8417
[2025-10-13 05:46:19] 2025-10-13 04:46:19,885 [wrapper] Test setup, not cleaning
[2025-10-13 05:46:19] 2025-10-13 04:46:19,886 [wrapper] apfmon messages muted
[2025-10-13 05:46:19] 2025-10-13 04:46:19,887 [wrapper] ==== wrapper stdout END ====
[2025-10-13 05:46:19] 2025-10-13 04:46:19,888 [wrapper] ==== wrapper stderr END ====
[2025-10-13 05:46:19]  *** Error codes and diagnostics ***
[2025-10-13 05:46:19]     "exeErrorCode": 0,
[2025-10-13 05:46:19]     "exeErrorDiag": "",
[2025-10-13 05:46:19]     "pilotErrorCode": 0,
[2025-10-13 05:46:19]     "pilotErrorDiag": "",
[2025-10-13 05:46:19]  *** Listing of results directory ***
[2025-10-13 05:46:19] total 421928
[2025-10-13 05:46:19] -rw-r--r-- 1 m m    557409 Oct 12 17:49 pilot3.tar.gz
[2025-10-13 05:46:19] -rw-r--r-- 1 m m      5112 Oct 12 18:13 queuedata.json
[2025-10-13 05:46:19] -rwx------ 1 m m     36292 Oct 12 18:14 runpilot2-wrapper.sh
[2025-10-13 05:46:19] -rw-rw-r-- 1 m m       100 Oct 13 02:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 05:46:19] -rwxr-xr-x 1 m m      7986 Oct 13 02:21 run_atlas
[2025-10-13 05:46:19] -rw-rw-r-- 1 m m       105 Oct 13 02:21 job.xml
[2025-10-13 05:46:19] -rw-r--r-- 2 m m     15120 Oct 13 02:21 start_atlas.sh
[2025-10-13 05:46:19] drwxrwx--x 2 m m      4096 Oct 13 02:21 shared
[2025-10-13 05:46:19] -rw-r--r-- 2 m m    569682 Oct 13 02:21 input.tar.gz
[2025-10-13 05:46:19] -rw-rw-r-- 1 m m      5883 Oct 13 02:21 init_data.xml
[2025-10-13 05:46:19] -rw-r--r-- 2 m m 221525167 Oct 13 02:21 EVNT.46676267._004806.pool.root.1
[2025-10-13 05:46:19] -rw-rw-r-- 1 m m         0 Oct 13 02:21 boinc_lockfile
[2025-10-13 05:46:19] -rw-rw-r-- 1 m m      2550 Oct 13 02:21 pandaJob.out
[2025-10-13 05:46:19] -rw------- 1 m m    975595 Oct 13 02:21 agis_schedconf.cvmfs.json
[2025-10-13 05:46:19] drwx------ 5 m m      4096 Oct 13 02:21 pilot3
[2025-10-13 05:46:19] -rw------- 1 m m 202463164 Oct 13 05:44 HITS.46676269._084538.pool.root.1
[2025-10-13 05:46:19] -rw-rw-r-- 1 m m       530 Oct 13 05:44 boinc_task_state.xml
[2025-10-13 05:46:19] -rw------- 1 m m      1030 Oct 13 05:44 memory_monitor_summary.json
[2025-10-13 05:46:19] -rw------- 1 m m   1560580 Oct 13 05:44 agis_ddmendpoints.agis.ALL.json
[2025-10-13 05:46:19] -rw------- 1 m m    375665 Oct 13 05:44 log.46676269._084538.job.log.tgz.1
[2025-10-13 05:46:19] -rw------- 1 m m        95 Oct 13 05:45 pilot_heartbeat.json
[2025-10-13 05:46:19] -rw------- 1 m m      7795 Oct 13 05:45 heartbeat.json
[2025-10-13 05:46:19] -rw-rw-r-- 1 m m      8192 Oct 13 05:46 boinc_mmap_file
[2025-10-13 05:46:19] -rw-rw-r-- 1 m m        28 Oct 13 05:46 wrapper_checkpoint.txt
[2025-10-13 05:46:19] -rw------- 1 m m      4745 Oct 13 05:46 pilotlog.txt
[2025-10-13 05:46:19] -rw------- 1 m m   1701563 Oct 13 05:46 log.46676269._084538.job.log.1
[2025-10-13 05:46:19] -rw------- 1 m m       357 Oct 13 05:46 output.list
[2025-10-13 05:46:19] -rw-rw-r-- 1 m m       620 Oct 13 05:46 runtime_log
[2025-10-13 05:46:19] -rw------- 1 m m   2099200 Oct 13 05:46 result.tar.gz
[2025-10-13 05:46:19] -rw------- 1 m m       645 Oct 13 05:46 YAyKDmUpES8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlpkNDmapPvIm.diag
[2025-10-13 05:46:19] -rw-rw-r-- 1 m m      8618 Oct 13 05:46 runtime_log.err
[2025-10-13 05:46:19] -rw-rw-r-- 1 m m     20747 Oct 13 05:46 stderr.txt
[2025-10-13 05:46:19] HITS file was successfully produced:
[2025-10-13 05:46:19] -rw------- 1 m m 202463164 Oct 13 05:44 shared/HITS.pool.root.1
[2025-10-13 05:46:19]  *** Contents of shared directory: ***
[2025-10-13 05:46:19] total 416692
[2025-10-13 05:46:19] -rw-r--r-- 2 m m     15120 Oct 13 02:21 start_atlas.sh
[2025-10-13 05:46:19] -rw-r--r-- 2 m m    569682 Oct 13 02:21 input.tar.gz
[2025-10-13 05:46:19] -rw-r--r-- 2 m m 221525167 Oct 13 02:21 ATLAS.root_0
[2025-10-13 05:46:19] -rw------- 1 m m 202463164 Oct 13 05:44 HITS.pool.root.1
[2025-10-13 05:46:19] -rw------- 1 m m   2099200 Oct 13 05:46 result.tar.gz
05:46:21 (4097): run_atlas exited; CPU time 46928.864078
05:46:21 (4097): called boinc_finish(0)

</stderr_txt>
]]>

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