Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:52:50 (4135314): wrapper (7.7.26015): starting
20:52:50 (4135314): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 20:52:50] Arguments: --nthreads 12
[2025-10-12 20:52:50] Threads: 12
[2025-10-12 20:52:50] Checking for CVMFS
[2025-10-12 20:52:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 20:52:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 20:52:50] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 20:52:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 20:52:51] 2.13.2.0 3683012 13532 149284 151642 0 195 37999120 40960001 5735 16776704 0 156213787 99.869 55097048 32595 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 20:52:51] CVMFS is ok
[2025-10-12 20:52:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 20:52:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 20:52:51] Further information can be found at the LHC@home message board.
[2025-10-12 20:52:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 20:52:51] Checking for apptainer binary...
[2025-10-12 20:52:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 20:52:51] Running /usr/bin/apptainer --version
[2025-10-12 20:52:51] apptainer version 1.4.3-1.el9
[2025-10-12 20:52:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 20:52:51] c8-7-4.aglt2.org
[2025-10-12 20:52:51] apptainer works
[2025-10-12 20:52:51] Set ATHENA_PROC_NUMBER=12
[2025-10-12 20:52:51] Set ATHENA_CORE_NUMBER=12
[2025-10-12 20:52:51] Starting ATLAS job with PandaID=6840223718
[2025-10-12 20:52:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 21:19:07]  *** The last 200 lines of the pilot log: ***
[2025-10-12 21:19:07]  replicas=None
[2025-10-12 21:19:07]  scope=mc23_13p6TeV
[2025-10-12 21:19:07]  status=None
[2025-10-12 21:19:07]  status_code=0
[2025-10-12 21:19:07]  storage_token=
[2025-10-12 21:19:07]  surl=/tmp/boinchome/slots/4/PanDA_Pilot-6840223718/log.46676269._081822.job.log.tgz.1
[2025-10-12 21:19:07]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2d/97/log.46676269._081822.job.log.tgz.1
[2025-10-12 21:19:07]  workdir=None
[2025-10-12 21:19:07] ]
[2025-10-12 21:19:07] 2025-10-13 01:18:26,831 | INFO     | transferring file log.46676269._081822.job.log.tgz.1 from /tmp/boinchome/slots/4/PanDA_Pilot-6840223718/log.46676269._081822.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 21:19:07] 2025-10-13 01:18:26,831 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/4/PanDA_Pilot-6840223718/log.46676269._081822.job.log.tgz.1 /tmp/boinchome/slots/4/log.46676269._081822.job
[2025-10-12 21:19:07] 2025-10-13 01:18:26,844 | INFO     | adding to output.list: log.46676269._081822.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2d/97/log.46676269._081822.job.log.tg
[2025-10-12 21:19:07] 2025-10-13 01:18:26,845 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 21:19:07] 2025-10-13 01:18:26,845 | INFO     | summary of transferred files:
[2025-10-12 21:19:07] 2025-10-13 01:18:26,845 | INFO     |  -- lfn=log.46676269._081822.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 21:19:07] 2025-10-13 01:18:26,845 | INFO     | stage-out finished correctly
[2025-10-12 21:19:07] 2025-10-13 01:18:27,009 | INFO     | time since job start (1529s) is within the limit (172800.0s)
[2025-10-12 21:19:07] 2025-10-13 01:18:27,025 | WARNING  | process 4145607 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 21:19:07] 2025-10-13 01:18:27,026 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6840223718/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 21:19:07] 2025-10-13 01:18:27,239 | INFO     | number of running child processes to parent process 4145607: 1
[2025-10-12 21:19:07] 2025-10-13 01:18:27,239 | INFO     | maximum number of monitored processes: 6
[2025-10-12 21:19:07] 2025-10-13 01:18:27,379 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 21:19:07] 2025-10-13 01:18:27,410 | INFO     | job 6840223718 has state=finished
[2025-10-12 21:19:07] 2025-10-13 01:18:27,410 | INFO     | preparing for final server update for job 6840223718 in state='finished'
[2025-10-12 21:19:07] 2025-10-13 01:18:27,411 | INFO     | this job has now completed (state=finished)
[2025-10-12 21:19:07] 2025-10-13 01:18:27,411 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 21:19:07] 2025-10-13 01:18:27,411 | INFO     | log transfer has been attempted: DONE
[2025-10-12 21:19:07] 2025-10-13 01:18:27,411 | INFO     | job 6840223718 has finished - writing final server update
[2025-10-12 21:19:07] 2025-10-13 01:18:27,411 | INFO     | total number of processed events: 400 (read)
[2025-10-12 21:19:07] 2025-10-13 01:18:27,412 | INFO     | executing command: lscpu
[2025-10-12 21:19:07] 2025-10-13 01:18:27,454 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 21:19:07] 2025-10-13 01:18:29,016 | INFO     | time since job start (1531s) is within the limit (172800.0s)
[2025-10-12 21:19:07] 2025-10-13 01:18:29,742 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 21:19:07] 2025-10-13 01:18:29,743 | INFO     | monitor loop #117: job 0:6840223718 is in state 'finished'
[2025-10-12 21:19:07] 2025-10-13 01:18:29,743 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:19:07] 2025-10-13 01:18:29,759 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3422.0366406249923
[2025-10-12 21:19:07] 2025-10-13 01:18:29,768 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6840223718/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 21:19:07] 2025-10-13 01:18:29,768 | INFO     | extracted standard info from prmon json
[2025-10-12 21:19:07] 2025-10-13 01:18:29,768 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 21:19:07] 2025-10-13 01:18:29,768 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 21:19:07] 2025-10-13 01:18:29,768 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 21:19:07] 2025-10-13 01:18:29,769 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 21:19:07] 2025-10-13 01:18:29,769 | INFO     | fitting pss+swap vs Time
[2025-10-12 21:19:07] 2025-10-13 01:18:29,769 | INFO     | sum of square deviations: 1802824.5
[2025-10-12 21:19:07] 2025-10-13 01:18:29,769 | INFO     | sum of deviations: 75407102.0
[2025-10-12 21:19:07] 2025-10-13 01:18:29,769 | INFO     | mean x: 1760317624.5
[2025-10-12 21:19:07] 2025-10-13 01:18:29,769 | INFO     | mean y: 2437461.0
[2025-10-12 21:19:07] 2025-10-13 01:18:29,769 | INFO     | -- intersect: -73626720930.77313
[2025-10-12 21:19:07] 2025-10-13 01:18:29,769 | INFO     | intersect: -73626720930.77313
[2025-10-12 21:19:07] 2025-10-13 01:18:29,769 | INFO     | chi2: 0.0011612433458085879
[2025-10-12 21:19:07] 2025-10-13 01:18:29,769 | INFO     | -- intersect: -73626720930.77313
[2025-10-12 21:19:07] 2025-10-13 01:18:29,770 | INFO     | current memory leak: 41.83 B/s (using 18 data points, chi2=0.00)
[2025-10-12 21:19:07] 2025-10-13 01:18:29,770 | INFO     | could have reported an average CPU frequency of 3533 MHz (4 samples)
[2025-10-12 21:19:07] 2025-10-13 01:18:29,770 | INFO     | ..............................
[2025-10-12 21:19:07] 2025-10-13 01:18:29,770 | INFO     | . Timing measurements:
[2025-10-12 21:19:07] 2025-10-13 01:18:29,770 | INFO     | . get job = 0 s
[2025-10-12 21:19:07] 2025-10-13 01:18:29,770 | INFO     | . initial setup = 2 s
[2025-10-12 21:19:07] 2025-10-13 01:18:29,770 | INFO     | . payload setup = 3 s
[2025-10-12 21:19:07] 2025-10-13 01:18:29,770 | INFO     | . stage-in = 0 s
[2025-10-12 21:19:07] 2025-10-13 01:18:29,770 | INFO     | . payload execution = 1504 s
[2025-10-12 21:19:07] 2025-10-13 01:18:29,770 | INFO     | . stage-out = 0 s
[2025-10-12 21:19:07] 2025-10-13 01:18:29,770 | INFO     | . log creation = 0 s
[2025-10-12 21:19:07] 2025-10-13 01:18:29,770 | INFO     | ..............................
[2025-10-12 21:19:07] 2025-10-13 01:18:30,233 | INFO     | 
[2025-10-12 21:19:07] 2025-10-13 01:18:30,233 | INFO     | job summary report
[2025-10-12 21:19:07] 2025-10-13 01:18:30,233 | INFO     | --------------------------------------------------
[2025-10-12 21:19:07] 2025-10-13 01:18:30,233 | INFO     | PanDA job id: 6840223718
[2025-10-12 21:19:07] 2025-10-13 01:18:30,233 | INFO     | task id: 46676269
[2025-10-12 21:19:07] 2025-10-13 01:18:30,233 | INFO     | errors: (none)
[2025-10-12 21:19:07] 2025-10-13 01:18:30,233 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 21:19:07] 2025-10-13 01:18:30,233 | INFO     | pilot state: finished 
[2025-10-12 21:19:07] 2025-10-13 01:18:30,233 | INFO     | transexitcode: 0
[2025-10-12 21:19:07] 2025-10-13 01:18:30,233 | INFO     | exeerrorcode: 0
[2025-10-12 21:19:07] 2025-10-13 01:18:30,233 | INFO     | exeerrordiag: 
[2025-10-12 21:19:07] 2025-10-13 01:18:30,233 | INFO     | exitcode: 0
[2025-10-12 21:19:07] 2025-10-13 01:18:30,233 | INFO     | exitmsg: OK
[2025-10-12 21:19:07] 2025-10-13 01:18:30,233 | INFO     | cpuconsumptiontime: 16049 s
[2025-10-12 21:19:07] 2025-10-13 01:18:30,233 | INFO     | nevents: 400
[2025-10-12 21:19:07] 2025-10-13 01:18:30,233 | INFO     | neventsw: 0
[2025-10-12 21:19:07] 2025-10-13 01:18:30,233 | INFO     | pid: 4145607
[2025-10-12 21:19:07] 2025-10-13 01:18:30,233 | INFO     | pgrp: 4145607
[2025-10-12 21:19:07] 2025-10-13 01:18:30,233 | INFO     | corecount: 12
[2025-10-12 21:19:07] 2025-10-13 01:18:30,233 | INFO     | event service: False
[2025-10-12 21:19:07] 2025-10-13 01:18:30,233 | INFO     | sizes: {0: 2348743, 3: 2349119, 11: 2349147, 1512: 2373959, 1514: 2383013, 1517: 2383151}
[2025-10-12 21:19:07] 2025-10-13 01:18:30,233 | INFO     | --------------------------------------------------
[2025-10-12 21:19:07] 2025-10-13 01:18:30,233 | INFO     | 
[2025-10-12 21:19:07] 2025-10-13 01:18:30,234 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-10-12 21:19:07] 2025-10-13 01:18:30,247 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 21:19:07] 2025-10-13 01:18:30,247 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 21:19:07] 2025-10-13 01:18:30,247 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 21:19:07] 2025-10-13 01:18:30,247 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 21:19:07] 2025-10-13 01:18:30,247 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 21:19:07] 2025-10-13 01:18:30,247 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 21:19:07] 2025-10-13 01:18:30,247 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 21:19:07] 2025-10-13 01:18:30,247 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 21:19:07] 2025-10-13 01:18:30,247 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 21:19:07] 2025-10-13 01:18:30,247 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 21:19:07] 2025-10-13 01:18:30,248 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 21:19:07] 2025-10-13 01:18:30,248 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 21:19:07] 2025-10-13 01:18:30,248 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 21:19:07] 2025-10-13 01:18:30,248 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 21:19:07] 2025-10-13 01:18:30,248 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 21:19:07] 2025-10-13 01:18:30,248 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 21:19:07] 2025-10-13 01:18:30,248 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 21:19:07] 2025-10-13 01:18:30,248 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 21:19:07] 2025-10-13 01:18:30,248 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 21:19:07] 2025-10-13 01:18:30,248 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 21:19:07] 2025-10-13 01:18:30,248 | INFO     | job 6840223718 has completed (purged errors)
[2025-10-12 21:19:07] 2025-10-13 01:18:30,248 | INFO     | overall cleanup function is called
[2025-10-12 21:19:07] 2025-10-13 01:18:31,255 | INFO     | --- collectZombieJob: --- 10, [4145607]
[2025-10-12 21:19:07] 2025-10-13 01:18:31,255 | INFO     | zombie collector waiting for pid 4145607
[2025-10-12 21:19:07] 2025-10-13 01:18:31,255 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 21:19:07] 2025-10-13 01:18:31,255 | INFO     | collected zombie processes
[2025-10-12 21:19:07] 2025-10-13 01:18:31,255 | INFO     | will attempt to kill all subprocesses of pid=4145607
[2025-10-12 21:19:07] 2025-10-13 01:18:31,479 | INFO     | process IDs to be killed: [4145607] (in reverse order)
[2025-10-12 21:19:07] 2025-10-13 01:18:31,567 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 21:19:07] 2025-10-13 01:18:31,567 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 21:19:07] 2025-10-13 01:18:31,580 | INFO     | did not find any defunct processes belonging to 4145607
[2025-10-12 21:19:07] 2025-10-13 01:18:31,588 | INFO     | did not find any defunct processes belonging to 4145607
[2025-10-12 21:19:07] 2025-10-13 01:18:31,588 | INFO     | ready for new job
[2025-10-12 21:19:07] 2025-10-13 01:18:31,588 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 21:19:07] 2025-10-13 01:18:31,589 | INFO     | ***************************************
[2025-10-12 21:19:07] 2025-10-13 01:18:31,589 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 21:19:07] 2025-10-13 01:18:31,589 | INFO     | ***************************************
[2025-10-12 21:19:07] 2025-10-13 01:18:31,589 | INFO     | 
[2025-10-12 21:19:07] 2025-10-13 01:18:31,605 | INFO     | architecture information:
[2025-10-12 21:19:07] 2025-10-13 01:18:31,606 | INFO     | executing command: cat /etc/os-release
[2025-10-12 21:19:07] 2025-10-13 01:18:31,616 | INFO     | cat /etc/os-release:
[2025-10-12 21:19:07] NAME="CentOS Linux"
[2025-10-12 21:19:07] VERSION="7 (Core)"
[2025-10-12 21:19:07] ID="centos"
[2025-10-12 21:19:07] ID_LIKE="rhel fedora"
[2025-10-12 21:19:07] VERSION_ID="7"
[2025-10-12 21:19:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 21:19:07] ANSI_COLOR="0;31"
[2025-10-12 21:19:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 21:19:07] HOME_URL="https://www.centos.org/"
[2025-10-12 21:19:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 21:19:07] 
[2025-10-12 21:19:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 21:19:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 21:19:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 21:19:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 21:19:07] 
[2025-10-12 21:19:07] 2025-10-13 01:18:31,616 | INFO     | ***************************************
[2025-10-12 21:19:07] 2025-10-13 01:18:32,119 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-10-12 21:19:07] 2025-10-13 01:18:32,131 | INFO     | sufficient remaining disk space (167408304128 B)
[2025-10-12 21:19:07] 2025-10-13 01:18:32,131 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 21:19:07] 2025-10-13 01:18:32,132 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 21:19:07] 2025-10-13 01:18:32,132 | INFO     | update_server=False
[2025-10-12 21:19:07] 2025-10-13 01:18:32,132 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 21:19:07] 2025-10-13 01:18:32,246 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 21:19:07] 2025-10-13 01:18:32,246 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 21:19:07] 2025-10-13 01:18:32,246 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:19:07] 2025-10-13 01:18:32,247 | INFO     | will abort loop
[2025-10-12 21:19:07] 2025-10-13 01:18:32,382 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 21:19:07] 2025-10-13 01:18:32,463 | INFO     | all data control threads have been joined
[2025-10-12 21:19:07] 2025-10-13 01:18:32,860 | INFO     | all payload control threads have been joined
[2025-10-12 21:19:07] 2025-10-13 01:18:32,867 | INFO     | all job control threads have been joined
[2025-10-12 21:19:07] 2025-10-13 01:18:33,137 | INFO     | [job] retrieve thread has finished
[2025-10-12 21:19:07] 2025-10-13 01:18:33,252 | INFO     | [job] job monitor thread has finished
[2025-10-12 21:19:07] 2025-10-13 01:18:33,373 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 21:19:07] 2025-10-13 01:18:33,414 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 21:19:07] 2025-10-13 01:18:33,468 | INFO     | [data] control thread has finished
[2025-10-12 21:19:07] 2025-10-13 01:18:33,565 | INFO     | [payload] failed_post thread has finished
[2025-10-12 21:19:07] 2025-10-13 01:18:33,865 | INFO     | [payload] control thread has finished
[2025-10-12 21:19:07] 2025-10-13 01:18:33,873 | INFO     | [job] control thread has finished
[2025-10-12 21:19:07] 2025-10-13 01:18:34,095 | INFO     | [data] copytool_in thread has finished
[2025-10-12 21:19:07] 2025-10-13 01:18:34,116 | INFO     | [payload] validate_post thread has finished
[2025-10-12 21:19:07] 2025-10-13 01:18:34,222 | INFO     | [job] validate thread has finished
[2025-10-12 21:19:07] 2025-10-13 01:18:34,328 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 21:19:07] 2025-10-13 01:18:34,328 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 21:19:07] 2025-10-13 01:18:34,332 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 21:19:07] 2025-10-13 01:18:34,387 | INFO     | [data] copytool_out thread has finished
[2025-10-12 21:19:07] 2025-10-13 01:18:34,815 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:19:07] 2025-10-13 01:18:35,821 | INFO     | [job] queue monitor thread has finished
[2025-10-12 21:19:07] 2025-10-13 01:18:37,420 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 21:19:07] 2025-10-13 01:19:00,737 | INFO     | [monitor] cgroup control has ended
[2025-10-12 21:19:07] 2025-10-13 01:19:02,242 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140320181188416)>', '<ExcThread(monitor, started 140319391737600)>']
[2025-10-12 21:19:07] 2025-10-13 01:19:02,358 | INFO     | PID=4139065 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 21:19:07] 2025-10-13 01:19:02,358 | INFO     | .. there are 9 such processes running
[2025-10-12 21:19:07] 2025-10-13 01:19:02,358 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 21:19:07] 2025-10-13 01:19:02,358 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 21:19:07] 2025-10-13 01:19:02,358 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 21:19:07] 2025-10-13 01:19:02,358 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 21:19:07] 2025-10-13 01:19:02,358 | INFO     | [monitor] control thread has ended
[2025-10-12 21:19:07] 2025-10-13 01:19:07,261 | INFO     | all workflow threads have been joined
[2025-10-12 21:19:07] 2025-10-13 01:19:07,261 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 21:19:07] 2025-10-13 01:19:07,262 | INFO     | traces error code: 0
[2025-10-12 21:19:07] 2025-10-13 01:19:07,262 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 21:19:07] 2025-10-13 01:19:07,346 [wrapper] ==== pilot stdout END ====
[2025-10-12 21:19:07] 2025-10-13 01:19:07,348 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 21:19:07] 2025-10-13 01:19:07,350 [wrapper] pilotpid: 4139065
[2025-10-12 21:19:07] 2025-10-13 01:19:07,351 [wrapper] Pilot exit status: 0
[2025-10-12 21:19:07] 2025-10-13 01:19:07,358 [wrapper] pandaids: 6840223718
[2025-10-12 21:19:07] 2025-10-13 01:19:07,424 [wrapper] cleanup supervisor_pilot   26606 4139066
[2025-10-12 21:19:07] 2025-10-13 01:19:07,426 [wrapper] Test setup, not cleaning
[2025-10-12 21:19:07] 2025-10-13 01:19:07,428 [wrapper] apfmon messages muted
[2025-10-12 21:19:07] 2025-10-13 01:19:07,430 [wrapper] ==== wrapper stdout END ====
[2025-10-12 21:19:07] 2025-10-13 01:19:07,431 [wrapper] ==== wrapper stderr END ====
[2025-10-12 21:19:07]  *** Error codes and diagnostics ***
[2025-10-12 21:19:07]     "exeErrorCode": 0,
[2025-10-12 21:19:07]     "exeErrorDiag": "",
[2025-10-12 21:19:07]     "pilotErrorCode": 0,
[2025-10-12 21:19:07]     "pilotErrorDiag": "",
[2025-10-12 21:19:07]  *** Listing of results directory ***
[2025-10-12 21:19:07] total 410468
[2025-10-12 21:19:07] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 11:00 pilot3.tar.gz
[2025-10-12 21:19:07] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 11:12 queuedata.json
[2025-10-12 21:19:07] -rwx------. 1 boincer umatlas     36292 Oct 12 11:12 runpilot2-wrapper.sh
[2025-10-12 21:19:07] -rw-r--r--. 1 boincer umatlas       100 Oct 12 20:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 21:19:07] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 20:52 run_atlas
[2025-10-12 21:19:07] -rw-r--r--. 1 boincer umatlas       105 Oct 12 20:52 job.xml
[2025-10-12 21:19:07] -rw-r--r--. 2 boincer umatlas 220745859 Oct 12 20:52 EVNT.46676267._004555.pool.root.1
[2025-10-12 21:19:07] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 20:52 start_atlas.sh
[2025-10-12 21:19:07] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 20:52 shared
[2025-10-12 21:19:07] -rw-r--r--. 2 boincer umatlas    569677 Oct 12 20:52 input.tar.gz
[2025-10-12 21:19:07] -rw-r--r--. 1 boincer umatlas         0 Oct 12 20:52 boinc_lockfile
[2025-10-12 21:19:07] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 20:52 pandaJob.out
[2025-10-12 21:19:07] -rw-------. 1 boincer umatlas    975603 Oct 12 20:52 agis_schedconf.cvmfs.json
[2025-10-12 21:19:07] -rw-------. 1 boincer umatlas   1560580 Oct 12 20:52 agis_ddmendpoints.agis.ALL.json
[2025-10-12 21:19:07] drwx------. 5 boincer umatlas      4096 Oct 12 20:52 pilot3
[2025-10-12 21:19:07] -rw-r--r--. 1 boincer umatlas      7164 Oct 12 21:18 init_data.xml
[2025-10-12 21:19:07] -rw-------. 1 boincer umatlas 194480923 Oct 12 21:18 HITS.46676269._081822.pool.root.1
[2025-10-12 21:19:07] -rw-r--r--. 1 boincer umatlas       529 Oct 12 21:18 boinc_task_state.xml
[2025-10-12 21:19:07] -rw-------. 1 boincer umatlas      1027 Oct 12 21:18 memory_monitor_summary.json
[2025-10-12 21:19:07] -rw-------. 1 boincer umatlas    335132 Oct 12 21:18 log.46676269._081822.job.log.tgz.1
[2025-10-12 21:19:07] -rw-------. 1 boincer umatlas        95 Oct 12 21:18 pilot_heartbeat.json
[2025-10-12 21:19:07] -rw-------. 1 boincer umatlas      7771 Oct 12 21:18 heartbeat.json
[2025-10-12 21:19:07] -rw-r--r--. 1 boincer umatlas        27 Oct 12 21:19 wrapper_checkpoint.txt
[2025-10-12 21:19:07] -rw-------. 1 boincer umatlas      5010 Oct 12 21:19 pilotlog.txt
[2025-10-12 21:19:07] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 21:19 boinc_mmap_file
[2025-10-12 21:19:07] -rw-------. 1 boincer umatlas    260619 Oct 12 21:19 log.46676269._081822.job.log.1
[2025-10-12 21:19:07] -rw-------. 1 boincer umatlas       357 Oct 12 21:19 output.list
[2025-10-12 21:19:07] -rw-r--r--. 1 boincer umatlas       620 Oct 12 21:19 runtime_log
[2025-10-12 21:19:07] -rw-------. 1 boincer umatlas    614400 Oct 12 21:19 result.tar.gz
[2025-10-12 21:19:07] -rw-r--r--. 1 boincer umatlas      8695 Oct 12 21:19 runtime_log.err
[2025-10-12 21:19:07] -rw-------. 1 boincer umatlas       648 Oct 12 21:19 HIjKDmUvCS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm9OkNDmmCikRn.diag
[2025-10-12 21:19:07] -rw-r--r--. 1 boincer umatlas     21826 Oct 12 21:19 stderr.txt
[2025-10-12 21:19:07] HITS file was successfully produced:
[2025-10-12 21:19:07] -rw-------. 1 boincer umatlas 194480923 Oct 12 21:18 shared/HITS.pool.root.1
[2025-10-12 21:19:07]  *** Contents of shared directory: ***
[2025-10-12 21:19:07] total 406680
[2025-10-12 21:19:07] -rw-r--r--. 2 boincer umatlas 220745859 Oct 12 20:52 ATLAS.root_0
[2025-10-12 21:19:07] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 20:52 start_atlas.sh
[2025-10-12 21:19:07] -rw-r--r--. 2 boincer umatlas    569677 Oct 12 20:52 input.tar.gz
[2025-10-12 21:19:07] -rw-------. 1 boincer umatlas 194480923 Oct 12 21:18 HITS.pool.root.1
[2025-10-12 21:19:07] -rw-------. 1 boincer umatlas    614400 Oct 12 21:19 result.tar.gz
21:19:08 (4135314): run_atlas exited; CPU time 16070.956084
21:19:08 (4135314): called boinc_finish(0)

</stderr_txt>
]]>

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