Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:37:09 (20959): wrapper (7.7.26015): starting
20:37:09 (20959): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 20:37:09] Arguments: --nthreads 12
[2025-10-12 20:37:09] Threads: 12
[2025-10-12 20:37:09] Checking for CVMFS
[2025-10-12 20:37:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 20:37:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 20:37:09] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 20:37:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 20:37:10] 2.11.2.0 3035 223564 98292 151642 0 59 15687242 20275200 1 130560 3 108933190 99.984 13676775 12631 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 20:37:10] CVMFS is ok
[2025-10-12 20:37:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 20:37:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 20:37:10] Further information can be found at the LHC@home message board.
[2025-10-12 20:37:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 20:37:10] Checking for apptainer binary...
[2025-10-12 20:37:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 20:37:10] Running /usr/bin/apptainer --version
[2025-10-12 20:37:10] apptainer version 1.3.2-1.el7
[2025-10-12 20:37:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 20:37:11] c-205-31.aglt2.org
[2025-10-12 20:37:11] apptainer works
[2025-10-12 20:37:11] Set ATHENA_PROC_NUMBER=12
[2025-10-12 20:37:11] Set ATHENA_CORE_NUMBER=12
[2025-10-12 20:37:11] Starting ATLAS job with PandaID=6840852591
[2025-10-12 20:37:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 21:51:39]  *** The last 200 lines of the pilot log: ***
[2025-10-12 21:51:39]  status=None
[2025-10-12 21:51:39]  status_code=0
[2025-10-12 21:51:39]  storage_token=
[2025-10-12 21:51:39]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6840852591/log.46676269._091420.job.log.tgz.1
[2025-10-12 21:51:39]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/68/97/log.46676269._091420.job.log.tgz.1
[2025-10-12 21:51:39]  workdir=None
[2025-10-12 21:51:39] ]
[2025-10-12 21:51:39] 2025-10-13 01:50:35,024 | INFO     | transferring file log.46676269._091420.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6840852591/log.46676269._091420.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 21:51:39] 2025-10-13 01:50:35,024 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6840852591/log.46676269._091420.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._091420.job
[2025-10-12 21:51:39] 2025-10-13 01:50:35,046 | INFO     | adding to output.list: log.46676269._091420.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/68/97/log.46676269._091420.job.log.tg
[2025-10-12 21:51:39] 2025-10-13 01:50:35,047 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 21:51:39] 2025-10-13 01:50:35,047 | INFO     | summary of transferred files:
[2025-10-12 21:51:39] 2025-10-13 01:50:35,047 | INFO     |  -- lfn=log.46676269._091420.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 21:51:39] 2025-10-13 01:50:35,047 | INFO     | stage-out finished correctly
[2025-10-12 21:51:39] 2025-10-13 01:50:35,079 | INFO     | time since job start (4389s) is within the limit (172800.0s)
[2025-10-12 21:51:39] 2025-10-13 01:50:35,208 | WARNING  | process 31894 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 21:51:39] 2025-10-13 01:50:35,208 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840852591/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 21:51:39] 2025-10-13 01:50:35,297 | INFO     | number of running child processes to parent process 31894: 1
[2025-10-12 21:51:39] 2025-10-13 01:50:35,297 | INFO     | maximum number of monitored processes: 6
[2025-10-12 21:51:39] 2025-10-13 01:50:36,668 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 21:51:39] 2025-10-13 01:50:36,849 | INFO     | job 6840852591 has state=finished
[2025-10-12 21:51:39] 2025-10-13 01:50:36,849 | INFO     | preparing for final server update for job 6840852591 in state='finished'
[2025-10-12 21:51:39] 2025-10-13 01:50:36,850 | INFO     | this job has now completed (state=finished)
[2025-10-12 21:51:39] 2025-10-13 01:50:36,850 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 21:51:39] 2025-10-13 01:50:36,850 | INFO     | log transfer has been attempted: DONE
[2025-10-12 21:51:39] 2025-10-13 01:50:36,850 | INFO     | job 6840852591 has finished - writing final server update
[2025-10-12 21:51:39] 2025-10-13 01:50:36,851 | INFO     | total number of processed events: 400 (read)
[2025-10-12 21:51:39] 2025-10-13 01:50:36,851 | INFO     | executing command: lscpu
[2025-10-12 21:51:39] 2025-10-13 01:50:36,875 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 21:51:39] 2025-10-13 01:50:37,138 | INFO     | time since job start (4391s) is within the limit (172800.0s)
[2025-10-12 21:51:39] 2025-10-13 01:50:37,800 | INFO     | monitor loop #327: job 0:6840852591 is in state 'finished'
[2025-10-12 21:51:39] 2025-10-13 01:50:37,800 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:51:39] 2025-10-13 01:50:39,141 | INFO     | time since job start (4393s) is within the limit (172800.0s)
[2025-10-12 21:51:39] 2025-10-13 01:50:40,262 | INFO     | PID=24645 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 21:51:39] 2025-10-13 01:50:40,303 | INFO     | monitor loop #328: job 0:6840852591 is in state 'finished'
[2025-10-12 21:51:39] 2025-10-13 01:50:40,303 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:51:39] 2025-10-13 01:50:41,263 | INFO     | time since job start (4395s) is within the limit (172800.0s)
[2025-10-12 21:51:39] 2025-10-13 01:50:41,587 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 21:51:39] 2025-10-13 01:50:41,591 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-10-12 21:51:39] 2025-10-13 01:50:41,594 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840852591/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 21:51:39] 2025-10-13 01:50:41,595 | INFO     | extracted standard info from prmon json
[2025-10-12 21:51:39] 2025-10-13 01:50:41,595 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 21:51:39] 2025-10-13 01:50:41,595 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 21:51:39] 2025-10-13 01:50:41,595 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 21:51:39] 2025-10-13 01:50:41,595 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 21:51:39] 2025-10-13 01:50:41,597 | INFO     | fitting pss+swap vs Time
[2025-10-12 21:51:39] 2025-10-13 01:50:41,597 | INFO     | sum of square deviations: 85136480.0
[2025-10-12 21:51:39] 2025-10-13 01:50:41,598 | INFO     | sum of deviations: -8413626056.0
[2025-10-12 21:51:39] 2025-10-13 01:50:41,598 | INFO     | mean x: 1760318132.0
[2025-10-12 21:51:39] 2025-10-13 01:50:41,598 | INFO     | mean y: 2823100.2615384613
[2025-10-12 21:51:39] 2025-10-13 01:50:41,598 | INFO     | -- intersect: 173966539972.79898
[2025-10-12 21:51:39] 2025-10-13 01:50:41,598 | INFO     | intersect: 173966539972.79898
[2025-10-12 21:51:39] 2025-10-13 01:50:41,598 | INFO     | chi2: 0.04625511115262305
[2025-10-12 21:51:39] 2025-10-13 01:50:41,599 | INFO     | -- intersect: 173966539972.79898
[2025-10-12 21:51:39] 2025-10-13 01:50:41,599 | INFO     | current memory leak: -98.83 B/s (using 65 data points, chi2=0.05)
[2025-10-12 21:51:39] 2025-10-13 01:50:41,599 | INFO     | could have reported an average CPU frequency of 2036 MHz (6 samples)
[2025-10-12 21:51:39] 2025-10-13 01:50:41,599 | INFO     | ..............................
[2025-10-12 21:51:39] 2025-10-13 01:50:41,599 | INFO     | . Timing measurements:
[2025-10-12 21:51:39] 2025-10-13 01:50:41,600 | INFO     | . get job = 0 s
[2025-10-12 21:51:39] 2025-10-13 01:50:41,600 | INFO     | . initial setup = 2 s
[2025-10-12 21:51:39] 2025-10-13 01:50:41,600 | INFO     | . payload setup = 7 s
[2025-10-12 21:51:39] 2025-10-13 01:50:41,600 | INFO     | . stage-in = 0 s
[2025-10-12 21:51:39] 2025-10-13 01:50:41,600 | INFO     | . payload execution = 4361 s
[2025-10-12 21:51:39] 2025-10-13 01:50:41,600 | INFO     | . stage-out = 0 s
[2025-10-12 21:51:39] 2025-10-13 01:50:41,600 | INFO     | . log creation = 0 s
[2025-10-12 21:51:39] 2025-10-13 01:50:41,600 | INFO     | ..............................
[2025-10-12 21:51:39] 2025-10-13 01:50:41,728 | INFO     | 
[2025-10-12 21:51:39] 2025-10-13 01:50:41,728 | INFO     | job summary report
[2025-10-12 21:51:39] 2025-10-13 01:50:41,729 | INFO     | --------------------------------------------------
[2025-10-12 21:51:39] 2025-10-13 01:50:41,729 | INFO     | PanDA job id: 6840852591
[2025-10-12 21:51:39] 2025-10-13 01:50:41,729 | INFO     | task id: 46676269
[2025-10-12 21:51:39] 2025-10-13 01:50:41,729 | INFO     | errors: (none)
[2025-10-12 21:51:39] 2025-10-13 01:50:41,729 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 21:51:39] 2025-10-13 01:50:41,729 | INFO     | pilot state: finished 
[2025-10-12 21:51:39] 2025-10-13 01:50:41,729 | INFO     | transexitcode: 0
[2025-10-12 21:51:39] 2025-10-13 01:50:41,730 | INFO     | exeerrorcode: 0
[2025-10-12 21:51:39] 2025-10-13 01:50:41,730 | INFO     | exeerrordiag: 
[2025-10-12 21:51:39] 2025-10-13 01:50:41,730 | INFO     | exitcode: 0
[2025-10-12 21:51:39] 2025-10-13 01:50:41,730 | INFO     | exitmsg: OK
[2025-10-12 21:51:39] 2025-10-13 01:50:41,730 | INFO     | cpuconsumptiontime: 46903 s
[2025-10-12 21:51:39] 2025-10-13 01:50:41,730 | INFO     | nevents: 400
[2025-10-12 21:51:39] 2025-10-13 01:50:41,731 | INFO     | neventsw: 0
[2025-10-12 21:51:39] 2025-10-13 01:50:41,731 | INFO     | pid: 31894
[2025-10-12 21:51:39] 2025-10-13 01:50:41,731 | INFO     | pgrp: 31894
[2025-10-12 21:51:39] 2025-10-13 01:50:41,731 | INFO     | corecount: 12
[2025-10-12 21:51:39] 2025-10-13 01:50:41,731 | INFO     | event service: False
[2025-10-12 21:51:39] 2025-10-13 01:50:41,731 | INFO     | sizes: {0: 2348857, 5: 2349119, 11: 2349175, 4371: 2375224, 4372: 2384222, 4374: 2384278, 4379: 2384600}
[2025-10-12 21:51:39] 2025-10-13 01:50:41,731 | INFO     | --------------------------------------------------
[2025-10-12 21:51:39] 2025-10-13 01:50:41,732 | INFO     | 
[2025-10-12 21:51:39] 2025-10-13 01:50:41,732 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 21:51:39] 2025-10-13 01:50:41,757 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 21:51:39] 2025-10-13 01:50:41,757 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 21:51:39] 2025-10-13 01:50:41,757 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 21:51:39] 2025-10-13 01:50:41,757 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 21:51:39] 2025-10-13 01:50:41,757 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 21:51:39] 2025-10-13 01:50:41,758 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 21:51:39] 2025-10-13 01:50:41,758 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 21:51:39] 2025-10-13 01:50:41,758 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 21:51:39] 2025-10-13 01:50:41,758 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 21:51:39] 2025-10-13 01:50:41,758 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 21:51:39] 2025-10-13 01:50:41,758 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 21:51:39] 2025-10-13 01:50:41,758 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 21:51:39] 2025-10-13 01:50:41,759 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 21:51:39] 2025-10-13 01:50:41,759 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 21:51:39] 2025-10-13 01:50:41,759 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 21:51:39] 2025-10-13 01:50:41,759 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 21:51:39] 2025-10-13 01:50:41,759 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 21:51:39] 2025-10-13 01:50:41,759 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 21:51:39] 2025-10-13 01:50:41,759 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 21:51:39] 2025-10-13 01:50:41,759 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 21:51:39] 2025-10-13 01:50:41,760 | INFO     | job 6840852591 has completed (purged errors)
[2025-10-12 21:51:39] 2025-10-13 01:50:41,760 | INFO     | overall cleanup function is called
[2025-10-12 21:51:39] 2025-10-13 01:50:42,763 | INFO     | --- collectZombieJob: --- 10, [31894]
[2025-10-12 21:51:39] 2025-10-13 01:50:42,763 | INFO     | zombie collector waiting for pid 31894
[2025-10-12 21:51:39] 2025-10-13 01:50:42,763 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 21:51:39] 2025-10-13 01:50:42,764 | INFO     | collected zombie processes
[2025-10-12 21:51:39] 2025-10-13 01:50:42,764 | INFO     | will attempt to kill all subprocesses of pid=31894
[2025-10-12 21:51:39] 2025-10-13 01:50:42,865 | INFO     | process IDs to be killed: [31894] (in reverse order)
[2025-10-12 21:51:39] 2025-10-13 01:50:42,918 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 21:51:39] 2025-10-13 01:50:42,918 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 21:51:39] 2025-10-13 01:50:42,922 | INFO     | did not find any defunct processes belonging to 31894
[2025-10-12 21:51:39] 2025-10-13 01:50:42,925 | INFO     | did not find any defunct processes belonging to 31894
[2025-10-12 21:51:39] 2025-10-13 01:50:42,925 | INFO     | ready for new job
[2025-10-12 21:51:39] 2025-10-13 01:50:42,925 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 21:51:39] 2025-10-13 01:50:42,927 | INFO     | ***************************************
[2025-10-12 21:51:39] 2025-10-13 01:50:42,927 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 21:51:39] 2025-10-13 01:50:42,927 | INFO     | ***************************************
[2025-10-12 21:51:39] 2025-10-13 01:50:42,927 | INFO     | 
[2025-10-12 21:51:39] 2025-10-13 01:50:42,927 | INFO     | architecture information:
[2025-10-12 21:51:39] 2025-10-13 01:50:42,928 | INFO     | executing command: cat /etc/os-release
[2025-10-12 21:51:39] 2025-10-13 01:50:42,944 | INFO     | cat /etc/os-release:
[2025-10-12 21:51:39] NAME="CentOS Linux"
[2025-10-12 21:51:39] VERSION="7 (Core)"
[2025-10-12 21:51:39] ID="centos"
[2025-10-12 21:51:39] ID_LIKE="rhel fedora"
[2025-10-12 21:51:39] VERSION_ID="7"
[2025-10-12 21:51:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 21:51:39] ANSI_COLOR="0;31"
[2025-10-12 21:51:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 21:51:39] HOME_URL="https://www.centos.org/"
[2025-10-12 21:51:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 21:51:39] 
[2025-10-12 21:51:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 21:51:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 21:51:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 21:51:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 21:51:39] 
[2025-10-12 21:51:39] 2025-10-13 01:50:42,945 | INFO     | ***************************************
[2025-10-12 21:51:39] 2025-10-13 01:50:43,448 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 21:51:39] 2025-10-13 01:50:43,466 | INFO     | sufficient remaining disk space (29355933696 B)
[2025-10-12 21:51:39] 2025-10-13 01:50:43,467 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 21:51:39] 2025-10-13 01:50:43,467 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 21:51:39] 2025-10-13 01:50:43,467 | INFO     | update_server=False
[2025-10-12 21:51:39] 2025-10-13 01:50:43,467 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 21:51:39] 2025-10-13 01:50:43,468 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 21:51:39] 2025-10-13 01:50:43,468 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:51:39] 2025-10-13 01:50:43,468 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 21:51:39] 2025-10-13 01:50:43,811 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:51:39] 2025-10-13 01:50:43,811 | INFO     | aborting loop
[2025-10-12 21:51:39] 2025-10-13 01:50:43,876 | INFO     | all payload control threads have been joined
[2025-10-12 21:51:39] 2025-10-13 01:50:44,010 | INFO     | all job control threads have been joined
[2025-10-12 21:51:39] 2025-10-13 01:50:44,253 | INFO     | all data control threads have been joined
[2025-10-12 21:51:39] 2025-10-13 01:50:44,473 | INFO     | [job] retrieve thread has finished
[2025-10-12 21:51:39] 2025-10-13 01:50:44,474 | INFO     | [job] queue monitor thread has finished
[2025-10-12 21:51:39] 2025-10-13 01:50:44,701 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 21:51:39] 2025-10-13 01:50:44,718 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 21:51:39] 2025-10-13 01:50:44,817 | INFO     | [job] job monitor thread has finished
[2025-10-12 21:51:39] 2025-10-13 01:50:44,878 | INFO     | [payload] control thread has finished
[2025-10-12 21:51:39] 2025-10-13 01:50:44,903 | INFO     | [payload] validate_post thread has finished
[2025-10-12 21:51:39] 2025-10-13 01:50:45,011 | INFO     | [job] control thread has finished
[2025-10-12 21:51:39] 2025-10-13 01:50:45,043 | INFO     | [payload] failed_post thread has finished
[2025-10-12 21:51:39] 2025-10-13 01:50:45,064 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 21:51:39] 2025-10-13 01:50:45,243 | INFO     | [data] copytool_in thread has finished
[2025-10-12 21:51:39] 2025-10-13 01:50:45,253 | INFO     | [data] control thread has finished
[2025-10-12 21:51:39] 2025-10-13 01:50:45,474 | INFO     | [data] copytool_out thread has finished
[2025-10-12 21:51:39] 2025-10-13 01:50:45,725 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 21:51:39] 2025-10-13 01:50:45,755 | INFO     | [job] validate thread has finished
[2025-10-12 21:51:39] 2025-10-13 01:50:47,474 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 21:51:39] 2025-10-13 01:51:14,466 | INFO     | PID=24645 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 21:51:39] 2025-10-13 01:51:14,467 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 21:51:39] 2025-10-13 01:51:14,467 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 21:51:39] 2025-10-13 01:51:14,467 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 21:51:39] 2025-10-13 01:51:33,196 | INFO     | [monitor] cgroup control has ended
[2025-10-12 21:51:39] 2025-10-13 01:51:33,985 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139908657108800)>', '<ExcThread(monitor, started 139907553031936)>']
[2025-10-12 21:51:39] 2025-10-13 01:51:34,563 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 21:51:39] 2025-10-13 01:51:34,563 | INFO     | [monitor] control thread has ended
[2025-10-12 21:51:39] 2025-10-13 01:51:38,991 | INFO     | all workflow threads have been joined
[2025-10-12 21:51:39] 2025-10-13 01:51:38,991 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 21:51:39] 2025-10-13 01:51:38,991 | INFO     | traces error code: 0
[2025-10-12 21:51:39] 2025-10-13 01:51:38,993 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 21:51:39] 2025-10-13 01:51:39,096 [wrapper] ==== pilot stdout END ====
[2025-10-12 21:51:39] 2025-10-13 01:51:39,100 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 21:51:39] 2025-10-13 01:51:39,103 [wrapper] pilotpid: 24645
[2025-10-12 21:51:39] 2025-10-13 01:51:39,107 [wrapper] Pilot exit status: 0
[2025-10-12 21:51:39] 2025-10-13 01:51:39,122 [wrapper] pandaids: 6840852591
[2025-10-12 21:51:39] 2025-10-13 01:51:39,169 [wrapper] cleanup supervisor_pilot 16937 24646
[2025-10-12 21:51:39] 2025-10-13 01:51:39,173 [wrapper] Test setup, not cleaning
[2025-10-12 21:51:39] 2025-10-13 01:51:39,177 [wrapper] apfmon messages muted
[2025-10-12 21:51:39] 2025-10-13 01:51:39,181 [wrapper] ==== wrapper stdout END ====
[2025-10-12 21:51:39] 2025-10-13 01:51:39,185 [wrapper] ==== wrapper stderr END ====
[2025-10-12 21:51:39]  *** Error codes and diagnostics ***
[2025-10-12 21:51:39]     "exeErrorCode": 0,
[2025-10-12 21:51:39]     "exeErrorDiag": "",
[2025-10-12 21:51:39]     "pilotErrorCode": 0,
[2025-10-12 21:51:39]     "pilotErrorDiag": "",
[2025-10-12 21:51:39]  *** Listing of results directory ***
[2025-10-12 21:51:39] total 416888
[2025-10-12 21:51:39] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 17:57 pilot3.tar.gz
[2025-10-12 21:51:39] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 18:43 queuedata.json
[2025-10-12 21:51:39] -rwx------ 1 boincer umatlas     36292 Oct 12 18:44 runpilot2-wrapper.sh
[2025-10-12 21:51:39] -rw-r--r-- 1 boincer umatlas       100 Oct 12 20:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 21:51:39] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 20:37 run_atlas
[2025-10-12 21:51:39] -rw-r--r-- 1 boincer umatlas       105 Oct 12 20:37 job.xml
[2025-10-12 21:51:39] -rw-r--r-- 2 boincer umatlas 224351694 Oct 12 20:37 EVNT.46676267._004628.pool.root.1
[2025-10-12 21:51:39] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 20:37 start_atlas.sh
[2025-10-12 21:51:39] drwxrwx--x 2 boincer umatlas      4096 Oct 12 20:37 shared
[2025-10-12 21:51:39] -rw-r--r-- 2 boincer umatlas    569683 Oct 12 20:37 input.tar.gz
[2025-10-12 21:51:39] -rw-r--r-- 1 boincer umatlas         0 Oct 12 20:37 boinc_lockfile
[2025-10-12 21:51:39] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 20:37 pandaJob.out
[2025-10-12 21:51:39] -rw------- 1 boincer umatlas    975603 Oct 12 20:37 agis_schedconf.cvmfs.json
[2025-10-12 21:51:39] -rw------- 1 boincer umatlas   1560580 Oct 12 20:37 agis_ddmendpoints.agis.ALL.json
[2025-10-12 21:51:39] drwx------ 5 boincer umatlas      4096 Oct 12 20:37 pilot3
[2025-10-12 21:51:39] -rw-r--r-- 1 boincer umatlas      5953 Oct 12 21:45 init_data.xml
[2025-10-12 21:51:39] -rw------- 1 boincer umatlas 196583335 Oct 12 21:50 HITS.46676269._091420.pool.root.1
[2025-10-12 21:51:39] -rw------- 1 boincer umatlas        95 Oct 12 21:50 pilot_heartbeat.json
[2025-10-12 21:51:39] -rw-r--r-- 1 boincer umatlas       529 Oct 12 21:50 boinc_task_state.xml
[2025-10-12 21:51:39] -rw------- 1 boincer umatlas      1047 Oct 12 21:50 memory_monitor_summary.json
[2025-10-12 21:51:39] -rw------- 1 boincer umatlas    387364 Oct 12 21:50 log.46676269._091420.job.log.tgz.1
[2025-10-12 21:51:39] -rw------- 1 boincer umatlas      7857 Oct 12 21:50 heartbeat.json
[2025-10-12 21:51:39] -rw-r--r-- 1 boincer umatlas        27 Oct 12 21:51 wrapper_checkpoint.txt
[2025-10-12 21:51:39] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 21:51 boinc_mmap_file
[2025-10-12 21:51:39] -rw------- 1 boincer umatlas      4746 Oct 12 21:51 pilotlog.txt
[2025-10-12 21:51:39] -rw------- 1 boincer umatlas    639122 Oct 12 21:51 log.46676269._091420.job.log.1
[2025-10-12 21:51:39] -rw------- 1 boincer umatlas       357 Oct 12 21:51 output.list
[2025-10-12 21:51:39] -rw-r--r-- 1 boincer umatlas       620 Oct 12 21:51 runtime_log
[2025-10-12 21:51:39] -rw------- 1 boincer umatlas   1044480 Oct 12 21:51 result.tar.gz
[2025-10-12 21:51:39] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 21:51 runtime_log.err
[2025-10-12 21:51:39] -rw------- 1 boincer umatlas       659 Oct 12 21:51 noJODmpyJS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmVulNDm1vGJAo.diag
[2025-10-12 21:51:39] -rw-r--r-- 1 boincer umatlas     22126 Oct 12 21:51 stderr.txt
[2025-10-12 21:51:39] HITS file was successfully produced:
[2025-10-12 21:51:39] -rw------- 1 boincer umatlas 196583335 Oct 12 21:50 shared/HITS.pool.root.1
[2025-10-12 21:51:39]  *** Contents of shared directory: ***
[2025-10-12 21:51:39] total 412676
[2025-10-12 21:51:39] -rw-r--r-- 2 boincer umatlas 224351694 Oct 12 20:37 ATLAS.root_0
[2025-10-12 21:51:39] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 20:37 start_atlas.sh
[2025-10-12 21:51:39] -rw-r--r-- 2 boincer umatlas    569683 Oct 12 20:37 input.tar.gz
[2025-10-12 21:51:39] -rw------- 1 boincer umatlas 196583335 Oct 12 21:50 HITS.pool.root.1
[2025-10-12 21:51:39] -rw------- 1 boincer umatlas   1044480 Oct 12 21:51 result.tar.gz
21:51:41 (20959): run_atlas exited; CPU time 46875.895351
21:51:41 (20959): called boinc_finish(0)

</stderr_txt>
]]>

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