Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:13:47 (2451365): wrapper (7.7.26015): starting
12:13:47 (2451365): wrapper: running run_atlas (--nthreads 2)
[2025-10-13 12:13:47] Arguments: --nthreads 2
[2025-10-13 12:13:47] Threads: 2
[2025-10-13 12:13:47] Checking for CVMFS
[2025-10-13 12:13:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 12:13:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 12:13:47] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 12:13:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 12:13:47] 2.9.2.0 1188606 5519 62624 151658 3 9 34597180 36864001 0 130560 0 3324094 99.988 190259 714 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 12:13:47] CVMFS is ok
[2025-10-13 12:13:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 12:13:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 12:13:47] Further information can be found at the LHC@home message board.
[2025-10-13 12:13:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 12:13:47] Checking for apptainer binary...
[2025-10-13 12:13:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 12:13:47] Running /usr/bin/apptainer --version
[2025-10-13 12:13:47] apptainer version 1.4.1-1.1
[2025-10-13 12:13:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 12:13:47] magicA244
[2025-10-13 12:13:47] apptainer works
[2025-10-13 12:13:48] Set ATHENA_PROC_NUMBER=2
[2025-10-13 12:13:48] Set ATHENA_CORE_NUMBER=2
[2025-10-13 12:13:48] Starting ATLAS job with PandaID=6840749474
[2025-10-13 12:13:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 14:22:41]  *** The last 200 lines of the pilot log: ***
[2025-10-13 14:22:41] 2025-10-13 12:22:11,213 | INFO     | zombie collector waiting for pid 2461473
[2025-10-13 14:22:41] 2025-10-13 12:22:11,214 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 14:22:41] 2025-10-13 12:22:11,215 | INFO     | collected zombie processes
[2025-10-13 14:22:41] 2025-10-13 12:22:11,215 | INFO     | will attempt to kill all subprocesses of pid=2461473
[2025-10-13 14:22:41] 2025-10-13 12:22:11,248 | INFO     | process IDs to be killed: [2461473] (in reverse order)
[2025-10-13 14:22:41] 2025-10-13 12:22:11,268 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 14:22:41] 2025-10-13 12:22:11,268 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 14:22:41] 2025-10-13 12:22:11,269 | INFO     | did not find any defunct processes belonging to 2461473
[2025-10-13 14:22:41] 2025-10-13 12:22:11,270 | INFO     | did not find any defunct processes belonging to 2461473
[2025-10-13 14:22:41] 2025-10-13 12:22:11,270 | INFO     | ready for new job
[2025-10-13 14:22:41] 2025-10-13 12:22:11,270 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 14:22:41] 2025-10-13 12:22:11,270 | INFO     | ***************************************
[2025-10-13 14:22:41] 2025-10-13 12:22:11,270 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 14:22:41] 2025-10-13 12:22:11,270 | INFO     | ***************************************
[2025-10-13 14:22:41] 2025-10-13 12:22:11,271 | INFO     | 
[2025-10-13 14:22:41] 2025-10-13 12:22:11,271 | INFO     | architecture information:
[2025-10-13 14:22:41] 2025-10-13 12:22:11,271 | INFO     | executing command: cat /etc/os-release
[2025-10-13 14:22:41] 2025-10-13 12:22:11,279 | INFO     | cat /etc/os-release:
[2025-10-13 14:22:41] NAME="CentOS Linux"
[2025-10-13 14:22:41] VERSION="7 (Core)"
[2025-10-13 14:22:41] ID="centos"
[2025-10-13 14:22:41] ID_LIKE="rhel fedora"
[2025-10-13 14:22:41] VERSION_ID="7"
[2025-10-13 14:22:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 14:22:41] ANSI_COLOR="0;31"
[2025-10-13 14:22:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 14:22:41] HOME_URL="https://www.centos.org/"
[2025-10-13 14:22:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 14:22:41] 
[2025-10-13 14:22:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 14:22:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 14:22:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 14:22:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 14:22:41] 
[2025-10-13 14:22:41] 2025-10-13 12:22:11,279 | INFO     | ***************************************
[2025-10-13 14:22:41] 2025-10-13 12:22:11,783 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 14:22:41] 2025-10-13 12:22:11,812 | INFO     | sufficient remaining disk space (489484713984 B)
[2025-10-13 14:22:41] 2025-10-13 12:22:11,812 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 14:22:41] 2025-10-13 12:22:11,813 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 14:22:41] 2025-10-13 12:22:11,813 | INFO     | update_server=False
[2025-10-13 14:22:41] 2025-10-13 12:22:11,813 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 14:22:41] 2025-10-13 12:22:11,814 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 14:22:41] 2025-10-13 12:22:11,814 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 14:22:41] 2025-10-13 12:22:11,814 | INFO     | aborting loop
[2025-10-13 14:22:41] 2025-10-13 12:22:12,420 | INFO     | all job control threads have been joined
[2025-10-13 14:22:41] 2025-10-13 12:22:12,429 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 14:22:41] 2025-10-13 12:22:12,521 | INFO     | all data control threads have been joined
[2025-10-13 14:22:41] 2025-10-13 12:22:12,602 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 14:22:41] 2025-10-13 12:22:12,626 | INFO     | [monitor] cgroup control has ended
[2025-10-13 14:22:41] 2025-10-13 12:22:12,683 | INFO     | all payload control threads have been joined
[2025-10-13 14:22:41] 2025-10-13 12:22:12,819 | INFO     | [job] retrieve thread has finished
[2025-10-13 14:22:41] 2025-10-13 12:22:12,819 | INFO     | [job] queue monitor thread has finished
[2025-10-13 14:22:41] 2025-10-13 12:22:12,820 | INFO     | [job] job monitor thread has finished
[2025-10-13 14:22:41] 2025-10-13 12:22:12,939 | INFO     | [data] copytool_in thread has finished
[2025-10-13 14:22:41] 2025-10-13 12:22:12,959 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 14:22:41] 2025-10-13 12:22:13,100 | INFO     | [payload] failed_post thread has finished
[2025-10-13 14:22:41] 2025-10-13 12:22:13,426 | INFO     | [job] control thread has finished
[2025-10-13 14:22:41] 2025-10-13 12:22:13,503 | INFO     | [job] validate thread has finished
[2025-10-13 14:22:41] 2025-10-13 12:22:13,527 | INFO     | [data] control thread has finished
[2025-10-13 14:22:41] 2025-10-13 12:22:13,613 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 14:22:41] 2025-10-13 12:22:13,632 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 14:22:41] 2025-10-13 12:22:13,689 | INFO     | [payload] control thread has finished
[2025-10-13 14:22:41] 2025-10-13 12:22:13,701 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 14:22:41] 2025-10-13 12:22:13,895 | INFO     | [payload] validate_post thread has finished
[2025-10-13 14:22:41] 2025-10-13 12:22:14,435 | INFO     | [data] copytool_out thread has finished
[2025-10-13 14:22:41] 2025-10-13 12:22:16,609 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 14:22:41] 2025-10-13 12:22:16,764 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140430813022016)>', '<ExcThread(monitor, started 140429727102720)>']
[2025-10-13 14:22:41] 2025-10-13 12:22:21,790 | INFO     | all workflow threads have been joined
[2025-10-13 14:22:41] 2025-10-13 12:22:21,791 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 14:22:41] 2025-10-13 12:22:21,792 | INFO     | traces error code: 0
[2025-10-13 14:22:41] 2025-10-13 12:22:21,792 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 14:22:41] 2025-10-13 12:22:41,872 | INFO     | PID=2455064 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 14:22:41] 2025-10-13 12:22:41,872 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 14:22:41] 2025-10-13 12:22:41,872 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 14:22:41] 2025-10-13 12:22:41,872 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 14:22:41] 2025-10-13 12:22:41,872 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 14:22:41] 2025-10-13 12:22:41,872 | INFO     | [monitor] control thread has ended
[2025-10-13 14:22:41] 2025-10-13 12:22:41,912 [wrapper] ==== pilot stdout END ====
[2025-10-13 14:22:41] 2025-10-13 12:22:41,914 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 14:22:41] 2025-10-13 12:22:41,916 [wrapper] pilotpid: 2455064
[2025-10-13 14:22:41] 2025-10-13 12:22:41,919 [wrapper] Pilot exit status: 0
[2025-10-13 14:22:41] 2025-10-13 12:22:41,924 [wrapper] pandaids: 6840749474
[2025-10-13 14:22:41] 2025-10-13 12:22:41,935 [wrapper] cleanup supervisor_pilot 2475711 2455065
[2025-10-13 14:22:41] 2025-10-13 12:22:41,937 [wrapper] Test setup, not cleaning
[2025-10-13 14:22:41] 2025-10-13 12:22:41,939 [wrapper] apfmon messages muted
[2025-10-13 14:22:41] 2025-10-13 12:22:41,941 [wrapper] ==== wrapper stdout END ====
[2025-10-13 14:22:41] 2025-10-13 12:22:41,943 [wrapper] ==== wrapper stderr END ====
[2025-10-13 14:22:41]  *** Error codes and diagnostics ***
[2025-10-13 14:22:42]     "exeErrorCode": 0,
[2025-10-13 14:22:42]     "exeErrorDiag": "",
[2025-10-13 14:22:42]     "pilotErrorCode": 0,
[2025-10-13 14:22:42]     "pilotErrorDiag": "",
[2025-10-13 14:22:42]  *** Listing of results directory ***
[2025-10-13 14:22:42] total 414872
[2025-10-13 14:22:42] -rw-r--r-- 1 boinc boinc    557409 Oct 12 22:23 pilot3.tar.gz
[2025-10-13 14:22:42] -rw-r--r-- 1 boinc boinc      5112 Oct 12 22:35 queuedata.json
[2025-10-13 14:22:42] -rwx------ 1 boinc boinc     36292 Oct 12 22:36 runpilot2-wrapper.sh
[2025-10-13 14:22:42] -rw-r--r-- 1 boinc boinc       100 Oct 13 12:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 14:22:42] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 12:13 run_atlas
[2025-10-13 14:22:42] -rw-r--r-- 1 boinc boinc       105 Oct 13 12:13 job.xml
[2025-10-13 14:22:42] -rw-r--r-- 2 boinc boinc 220219100 Oct 13 12:13 EVNT.46676267._004855.pool.root.1
[2025-10-13 14:22:42] -rw-r--r-- 2 boinc boinc    569683 Oct 13 12:13 input.tar.gz
[2025-10-13 14:22:42] -rw-r--r-- 2 boinc boinc     15120 Oct 13 12:13 start_atlas.sh
[2025-10-13 14:22:42] drwxrwx--x 2 boinc boinc      4096 Oct 13 12:13 shared
[2025-10-13 14:22:42] -rw-r--r-- 1 boinc boinc         0 Oct 13 12:13 boinc_setup_complete
[2025-10-13 14:22:42] -rw-r--r-- 1 boinc boinc      6209 Oct 13 12:13 init_data.xml
[2025-10-13 14:22:42] -rw-r--r-- 1 boinc boinc         0 Oct 13 12:13 boinc_lockfile
[2025-10-13 14:22:42] -rw-r--r-- 1 boinc boinc      2550 Oct 13 12:13 pandaJob.out
[2025-10-13 14:22:42] -rw------- 1 boinc boinc    972497 Oct 13 12:14 agis_schedconf.cvmfs.json
[2025-10-13 14:22:42] -rw------- 1 boinc boinc   1560580 Oct 13 12:14 agis_ddmendpoints.agis.ALL.json
[2025-10-13 14:22:42] drwx------ 5 boinc boinc      4096 Oct 13 12:14 pilot3
[2025-10-13 14:22:42] -rw------- 1 boinc boinc 197930882 Oct 13 14:21 HITS.46676269._088906.pool.root.1
[2025-10-13 14:22:42] -rw-r--r-- 1 boinc boinc       530 Oct 13 14:21 boinc_task_state.xml
[2025-10-13 14:22:42] -rw------- 1 boinc boinc      1012 Oct 13 14:21 memory_monitor_summary.json
[2025-10-13 14:22:42] -rw------- 1 boinc boinc    291422 Oct 13 14:21 log.46676269._088906.job.log.tgz.1
[2025-10-13 14:22:42] -rw------- 1 boinc boinc      7758 Oct 13 14:22 heartbeat.json
[2025-10-13 14:22:42] -rw-r--r-- 1 boinc boinc      8192 Oct 13 14:22 boinc_mmap_file
[2025-10-13 14:22:42] -rw-r--r-- 1 boinc boinc        27 Oct 13 14:22 wrapper_checkpoint.txt
[2025-10-13 14:22:42] -rw------- 1 boinc boinc       747 Oct 13 14:22 pilotlog.txt
[2025-10-13 14:22:42] -rw------- 1 boinc boinc        95 Oct 13 14:22 pilot_heartbeat.json
[2025-10-13 14:22:42] -rw------- 1 boinc boinc   1105993 Oct 13 14:22 log.46676269._088906.job.log.1
[2025-10-13 14:22:42] -rw------- 1 boinc boinc       357 Oct 13 14:22 output.list
[2025-10-13 14:22:42] -rw-r--r-- 1 boinc boinc       620 Oct 13 14:22 runtime_log
[2025-10-13 14:22:42] -rw------- 1 boinc boinc   1413120 Oct 13 14:22 result.tar.gz
[2025-10-13 14:22:42] -rw-r--r-- 1 boinc boinc      8792 Oct 13 14:22 runtime_log.err
[2025-10-13 14:22:42] -rw------- 1 boinc boinc       662 Oct 13 14:22 BH8LDm2yHS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmRyUMDmXukdGo.diag
[2025-10-13 14:22:42] -rw-r--r-- 1 boinc boinc     10516 Oct 13 14:22 stderr.txt
[2025-10-13 14:22:42] HITS file was successfully produced:
[2025-10-13 14:22:42] -rw------- 1 boinc boinc 197930882 Oct 13 14:21 shared/HITS.pool.root.1
[2025-10-13 14:22:42]  *** Contents of shared directory: ***
[2025-10-13 14:22:42] total 410316
[2025-10-13 14:22:42] -rw-r--r-- 2 boinc boinc 220219100 Oct 13 12:13 ATLAS.root_0
[2025-10-13 14:22:42] -rw-r--r-- 2 boinc boinc    569683 Oct 13 12:13 input.tar.gz
[2025-10-13 14:22:42] -rw-r--r-- 2 boinc boinc     15120 Oct 13 12:13 start_atlas.sh
[2025-10-13 14:22:42] -rw------- 1 boinc boinc 197930882 Oct 13 14:21 HITS.pool.root.1
[2025-10-13 14:22:42] -rw------- 1 boinc boinc   1413120 Oct 13 14:22 result.tar.gz
14:22:43 (2451365): run_atlas exited; CPU time 14972.524809
14:22:43 (2451365): called boinc_finish(0)

</stderr_txt>
]]>

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