Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:40:25 (3496251): wrapper (7.7.26015): starting
12:40:25 (3496251): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 12:40:25] Arguments: --nthreads 3
[2025-10-13 12:40:25] Threads: 3
[2025-10-13 12:40:25] Checking for CVMFS
[2025-10-13 12:40:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 12:40:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 12:40:25] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 12:40:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 12:40:26] 2.9.2.0 1825770 5559 84228 151658 3 57 30347974 36864000 0 130560 0 4334512 99.991 193403 801 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 12:40:26] CVMFS is ok
[2025-10-13 12:40:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 12:40:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 12:40:26] Further information can be found at the LHC@home message board.
[2025-10-13 12:40:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 12:40:26] Checking for apptainer binary...
[2025-10-13 12:40:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 12:40:26] Running /usr/bin/apptainer --version
[2025-10-13 12:40:26] apptainer version 1.4.1-1.1
[2025-10-13 12:40:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 12:40:26] magicA246a
[2025-10-13 12:40:26] apptainer works
[2025-10-13 12:40:26] Set ATHENA_PROC_NUMBER=3
[2025-10-13 12:40:26] Set ATHENA_CORE_NUMBER=3
[2025-10-13 12:40:26] Starting ATLAS job with PandaID=6840749294
[2025-10-13 12:40:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 14:04:44]  *** The last 200 lines of the pilot log: ***
[2025-10-13 14:04:44] 2025-10-13 12:03:44,252 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 14:04:44] 2025-10-13 12:03:44,252 | INFO     | aborting loop
[2025-10-13 14:04:44] 2025-10-13 12:03:44,376 | INFO     | all data control threads have been joined
[2025-10-13 14:04:44] 2025-10-13 12:03:44,863 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 14:04:44] 2025-10-13 12:03:44,873 | INFO     | [job] queue monitor thread has finished
[2025-10-13 14:04:44] 2025-10-13 12:03:44,873 | INFO     | [job] retrieve thread has finished
[2025-10-13 14:04:44] 2025-10-13 12:03:44,988 | INFO     | all job control threads have been joined
[2025-10-13 14:04:44] 2025-10-13 12:03:45,067 | INFO     | [payload] control thread has finished
[2025-10-13 14:04:44] 2025-10-13 12:03:45,214 | INFO     | [data] copytool_in thread has finished
[2025-10-13 14:04:44] 2025-10-13 12:03:45,258 | INFO     | [job] job monitor thread has finished
[2025-10-13 14:04:44] 2025-10-13 12:03:45,285 | INFO     | [payload] failed_post thread has finished
[2025-10-13 14:04:44] 2025-10-13 12:03:45,348 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 14:04:44] 2025-10-13 12:03:45,382 | INFO     | [data] control thread has finished
[2025-10-13 14:04:44] 2025-10-13 12:03:45,404 | INFO     | [job] validate thread has finished
[2025-10-13 14:04:44] 2025-10-13 12:03:45,417 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 14:04:44] 2025-10-13 12:03:45,526 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 14:04:44] 2025-10-13 12:03:45,562 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 14:04:44] 2025-10-13 12:03:45,994 | INFO     | [job] control thread has finished
[2025-10-13 14:04:44] 2025-10-13 12:03:46,075 | INFO     | [payload] validate_post thread has finished
[2025-10-13 14:04:44] 2025-10-13 12:03:46,869 | INFO     | [data] copytool_out thread has finished
[2025-10-13 14:04:44] 2025-10-13 12:03:49,425 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 14:04:44] 2025-10-13 12:03:54,563 | INFO     | job.realtimelogging is not enabled
[2025-10-13 14:04:44] 2025-10-13 12:03:55,569 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 14:04:44] 2025-10-13 12:04:14,785 | INFO     | PID=3499989 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 14:04:44] 2025-10-13 12:04:14,785 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 14:04:44] 2025-10-13 12:04:14,785 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 14:04:44] 2025-10-13 12:04:14,785 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 14:04:44] 2025-10-13 12:04:38,487 | INFO     | [monitor] cgroup control has ended
[2025-10-13 14:04:44] 2025-10-13 12:04:39,593 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139783239878464)>', '<ExcThread(monitor, started 139782361429760)>']
[2025-10-13 14:04:44] 2025-10-13 12:04:39,910 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 14:04:44] 2025-10-13 12:04:39,910 | INFO     | [monitor] control thread has ended
[2025-10-13 14:04:44] 2025-10-13 12:04:44,619 | INFO     | all workflow threads have been joined
[2025-10-13 14:04:44] 2025-10-13 12:04:44,619 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 14:04:44] 2025-10-13 12:04:44,619 | INFO     | traces error code: 0
[2025-10-13 14:04:44] 2025-10-13 12:04:44,619 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 14:04:44] 2025-10-13 12:04:44,674 [wrapper] ==== pilot stdout END ====
[2025-10-13 14:04:44] 2025-10-13 12:04:44,676 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 14:04:44] 2025-10-13 12:04:44,679 [wrapper] pilotpid: 3499989
[2025-10-13 14:04:44] 2025-10-13 12:04:44,681 [wrapper] Pilot exit status: 0
[2025-10-13 14:04:44] 2025-10-13 12:04:44,689 [wrapper] pandaids: 6840749294
[2025-10-13 14:04:44] 2025-10-13 12:04:44,708 [wrapper] cleanup supervisor_pilot 3518681 3499990
[2025-10-13 14:04:44] 2025-10-13 12:04:44,711 [wrapper] Test setup, not cleaning
[2025-10-13 14:04:44] 2025-10-13 12:04:44,713 [wrapper] apfmon messages muted
[2025-10-13 14:04:44] 2025-10-13 12:04:44,716 [wrapper] ==== wrapper stdout END ====
[2025-10-13 14:04:44] 2025-10-13 12:04:44,718 [wrapper] ==== wrapper stderr END ====
[2025-10-13 14:04:44]  *** Error codes and diagnostics ***
[2025-10-13 14:04:44]     "exeErrorCode": 0,
[2025-10-13 14:04:44]     "exeErrorDiag": "",
[2025-10-13 14:04:44]     "pilotErrorCode": 0,
[2025-10-13 14:04:44]     "pilotErrorDiag": "",
[2025-10-13 14:04:44]  *** Listing of results directory ***
[2025-10-13 14:04:44] total 411944
[2025-10-13 14:04:44] -rw-r--r-- 1 boinc boinc    557409 Oct 12 22:23 pilot3.tar.gz
[2025-10-13 14:04:44] -rwx------ 1 boinc boinc     36292 Oct 12 22:35 runpilot2-wrapper.sh
[2025-10-13 14:04:44] -rw-r--r-- 1 boinc boinc      5112 Oct 12 22:35 queuedata.json
[2025-10-13 14:04:44] -rw-r--r-- 1 boinc boinc       100 Oct 13 12:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 14:04:44] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 12:40 run_atlas
[2025-10-13 14:04:44] -rw-r--r-- 1 boinc boinc       105 Oct 13 12:40 job.xml
[2025-10-13 14:04:44] -rw-r--r-- 2 boinc boinc 224055312 Oct 13 12:40 EVNT.46676267._004852.pool.root.1
[2025-10-13 14:04:44] -rw-r--r-- 2 boinc boinc    569674 Oct 13 12:40 input.tar.gz
[2025-10-13 14:04:44] -rw-r--r-- 2 boinc boinc     15120 Oct 13 12:40 start_atlas.sh
[2025-10-13 14:04:44] drwxrwx--x 2 boinc boinc      4096 Oct 13 12:40 shared
[2025-10-13 14:04:44] -rw-r--r-- 1 boinc boinc         0 Oct 13 12:40 boinc_setup_complete
[2025-10-13 14:04:44] -rw-r--r-- 1 boinc boinc      6449 Oct 13 12:40 init_data.xml
[2025-10-13 14:04:44] -rw-r--r-- 1 boinc boinc         0 Oct 13 12:40 boinc_lockfile
[2025-10-13 14:04:44] -rw-r--r-- 1 boinc boinc      2550 Oct 13 12:40 pandaJob.out
[2025-10-13 14:04:44] -rw------- 1 boinc boinc    972497 Oct 13 12:40 agis_schedconf.cvmfs.json
[2025-10-13 14:04:44] -rw------- 1 boinc boinc   1560580 Oct 13 12:40 agis_ddmendpoints.agis.ALL.json
[2025-10-13 14:04:44] drwx------ 5 boinc boinc      4096 Oct 13 12:40 pilot3
[2025-10-13 14:04:44] -rw-r--r-- 1 boinc boinc       529 Oct 13 14:03 boinc_task_state.xml
[2025-10-13 14:04:44] -rw------- 1 boinc boinc 191925041 Oct 13 14:03 HITS.46676269._088815.pool.root.1
[2025-10-13 14:04:44] -rw------- 1 boinc boinc      1016 Oct 13 14:03 memory_monitor_summary.json
[2025-10-13 14:04:44] -rw------- 1 boinc boinc    248360 Oct 13 14:03 log.46676269._088815.job.log.tgz.1
[2025-10-13 14:04:44] -rw------- 1 boinc boinc      7758 Oct 13 14:03 heartbeat.json
[2025-10-13 14:04:44] -rw-r--r-- 1 boinc boinc      8192 Oct 13 14:04 boinc_mmap_file
[2025-10-13 14:04:44] -rw-r--r-- 1 boinc boinc        27 Oct 13 14:04 wrapper_checkpoint.txt
[2025-10-13 14:04:44] -rw------- 1 boinc boinc        95 Oct 13 14:04 pilot_heartbeat.json
[2025-10-13 14:04:44] -rw------- 1 boinc boinc      4824 Oct 13 14:04 pilotlog.txt
[2025-10-13 14:04:44] -rw------- 1 boinc boinc    732665 Oct 13 14:04 log.46676269._088815.job.log.1
[2025-10-13 14:04:44] -rw------- 1 boinc boinc       357 Oct 13 14:04 output.list
[2025-10-13 14:04:44] -rw-r--r-- 1 boinc boinc       620 Oct 13 14:04 runtime_log
[2025-10-13 14:04:44] -rw------- 1 boinc boinc   1003520 Oct 13 14:04 result.tar.gz
[2025-10-13 14:04:44] -rw-r--r-- 1 boinc boinc      8797 Oct 13 14:04 runtime_log.err
[2025-10-13 14:04:44] -rw------- 1 boinc boinc       662 Oct 13 14:04 L7oMDmkxHS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmwxUMDmVcJ0hm.diag
[2025-10-13 14:04:44] -rw-r--r-- 1 boinc boinc      7059 Oct 13 14:04 stderr.txt
[2025-10-13 14:04:44] HITS file was successfully produced:
[2025-10-13 14:04:44] -rw------- 1 boinc boinc 191925041 Oct 13 14:03 shared/HITS.pool.root.1
[2025-10-13 14:04:44]  *** Contents of shared directory: ***
[2025-10-13 14:04:44] total 407800
[2025-10-13 14:04:44] -rw-r--r-- 2 boinc boinc 224055312 Oct 13 12:40 ATLAS.root_0
[2025-10-13 14:04:44] -rw-r--r-- 2 boinc boinc    569674 Oct 13 12:40 input.tar.gz
[2025-10-13 14:04:44] -rw-r--r-- 2 boinc boinc     15120 Oct 13 12:40 start_atlas.sh
[2025-10-13 14:04:44] -rw------- 1 boinc boinc 191925041 Oct 13 14:03 HITS.pool.root.1
[2025-10-13 14:04:44] -rw------- 1 boinc boinc   1003520 Oct 13 14:04 result.tar.gz
14:04:46 (3496251): run_atlas exited; CPU time 14255.225692
14:04:46 (3496251): called boinc_finish(0)

</stderr_txt>
]]>

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