Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:41:34 (12321): wrapper (7.7.26015): starting
20:41:34 (12321): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 20:41:34] Arguments: --nthreads 8
[2025-10-12 20:41:34] Threads: 8
[2025-10-12 20:41:34] Checking for CVMFS
[2025-10-12 20:41:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 20:41:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 20:41:34] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 20:41:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 20:41:34] 2.11.2.0 12540 53600 125388 151642 2 188 16024326 18432001 1833 130560 0 49206032 99.976 2407296 38150 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 20:41:34] CVMFS is ok
[2025-10-12 20:41:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 20:41:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 20:41:34] Further information can be found at the LHC@home message board.
[2025-10-12 20:41:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 20:41:34] Checking for apptainer binary...
[2025-10-12 20:41:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 20:41:34] Running /usr/bin/apptainer --version
[2025-10-12 20:41:34] apptainer version 1.3.2-1.el7
[2025-10-12 20:41:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 20:41:35] c-206-17.aglt2.org
[2025-10-12 20:41:35] apptainer works
[2025-10-12 20:41:35] Set ATHENA_PROC_NUMBER=8
[2025-10-12 20:41:35] Set ATHENA_CORE_NUMBER=8
[2025-10-12 20:41:35] Starting ATLAS job with PandaID=6840749105
[2025-10-12 20:41:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 23:42:09]  *** The last 200 lines of the pilot log: ***
[2025-10-12 23:42:09] 2025-10-13 03:41:20,976 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 23:42:09] 2025-10-13 03:41:20,981 | INFO     | fitting pss+swap vs Time
[2025-10-12 23:42:09] 2025-10-13 03:41:20,981 | INFO     | sum of square deviations: 1719429448.0
[2025-10-12 23:42:09] 2025-10-13 03:41:20,983 | INFO     | sum of deviations: 10960794821.000002
[2025-10-12 23:42:09] 2025-10-13 03:41:20,983 | INFO     | mean x: 1760321499.0
[2025-10-12 23:42:09] 2025-10-13 03:41:20,983 | INFO     | mean y: 2457974.7005649717
[2025-10-12 23:42:09] 2025-10-13 03:41:20,984 | INFO     | -- intersect: -11219010165.197292
[2025-10-12 23:42:09] 2025-10-13 03:41:20,984 | INFO     | intersect: -11219010165.197292
[2025-10-12 23:42:09] 2025-10-13 03:41:20,984 | INFO     | chi2: 2.3421059026588242
[2025-10-12 23:42:09] 2025-10-13 03:41:20,985 | INFO     | sum of square deviations: 1577789583.0
[2025-10-12 23:42:09] 2025-10-13 03:41:20,986 | INFO     | sum of deviations: 22436421925.5
[2025-10-12 23:42:09] 2025-10-13 03:41:20,986 | INFO     | mean x: 1760321346.5
[2025-10-12 23:42:09] 2025-10-13 03:41:20,986 | INFO     | mean y: 2470035.5058139535
[2025-10-12 23:42:09] 2025-10-13 03:41:20,987 | INFO     | -- intersect: -25029582958.177998
[2025-10-12 23:42:09] 2025-10-13 03:41:20,987 | INFO     | intersect: -25029582958.177998
[2025-10-12 23:42:09] 2025-10-13 03:41:20,987 | INFO     | chi2: 1.5293769380532298
[2025-10-12 23:42:09] 2025-10-13 03:41:20,987 | INFO     | current chi2=1.5293769380532298 (change=34.70077777793744 %)
[2025-10-12 23:42:09] 2025-10-13 03:41:20,988 | INFO     | sum of square deviations: 1444149868.0
[2025-10-12 23:42:09] 2025-10-13 03:41:20,989 | INFO     | sum of deviations: 21752314031.999992
[2025-10-12 23:42:09] 2025-10-13 03:41:20,989 | INFO     | mean x: 1760321194.0
[2025-10-12 23:42:09] 2025-10-13 03:41:20,989 | INFO     | mean y: 2469255.1736526946
[2025-10-12 23:42:09] 2025-10-13 03:41:20,990 | INFO     | -- intersect: -26512133043.064537
[2025-10-12 23:42:09] 2025-10-13 03:41:20,990 | INFO     | intersect: -26512133043.064537
[2025-10-12 23:42:09] 2025-10-13 03:41:20,990 | INFO     | chi2: 1.530666709337318
[2025-10-12 23:42:09] 2025-10-13 03:41:20,990 | INFO     | current chi2=1.530666709337318 (change=-0.08433311971671419 %)
[2025-10-12 23:42:09] 2025-10-13 03:41:20,991 | INFO     | right removable region: 166
[2025-10-12 23:42:09] 2025-10-13 03:41:20,991 | INFO     | sum of square deviations: 1577789583.0
[2025-10-12 23:42:09] 2025-10-13 03:41:20,992 | INFO     | sum of deviations: -16420683421.5
[2025-10-12 23:42:09] 2025-10-13 03:41:20,993 | INFO     | mean x: 1760321651.5
[2025-10-12 23:42:09] 2025-10-13 03:41:20,993 | INFO     | mean y: 2487110.261627907
[2025-10-12 23:42:09] 2025-10-13 03:41:20,993 | INFO     | -- intersect: 18322854332.063442
[2025-10-12 23:42:09] 2025-10-13 03:41:20,993 | INFO     | intersect: 18322854332.063442
[2025-10-12 23:42:09] 2025-10-13 03:41:20,994 | INFO     | chi2: 0.9169497385357057
[2025-10-12 23:42:09] 2025-10-13 03:41:20,994 | INFO     | current chi2=0.9169497385357057 (change=60.849347696243846 %)
[2025-10-12 23:42:09] 2025-10-13 03:41:20,994 | INFO     | sum of square deviations: 1444149868.0
[2025-10-12 23:42:09] 2025-10-13 03:41:20,995 | INFO     | sum of deviations: -21098621135.0
[2025-10-12 23:42:09] 2025-10-13 03:41:20,996 | INFO     | mean x: 1760321804.0
[2025-10-12 23:42:09] 2025-10-13 03:41:20,996 | INFO     | mean y: 2492410.886227545
[2025-10-12 23:42:09] 2025-10-13 03:41:20,996 | INFO     | -- intersect: 25720296110.658283
[2025-10-12 23:42:09] 2025-10-13 03:41:20,996 | INFO     | intersect: 25720296110.658283
[2025-10-12 23:42:09] 2025-10-13 03:41:20,997 | INFO     | chi2: 0.8703319395353334
[2025-10-12 23:42:09] 2025-10-13 03:41:20,997 | INFO     | current chi2=0.8703319395353334 (change=5.084008102212579 %)
[2025-10-12 23:42:09] 2025-10-13 03:41:20,997 | INFO     | left removable region: 20
[2025-10-12 23:42:09] 2025-10-13 03:41:20,997 | INFO     | sum of square deviations: 964976232.5
[2025-10-12 23:42:09] 2025-10-13 03:41:20,998 | INFO     | sum of deviations: -5458967531.0
[2025-10-12 23:42:09] 2025-10-13 03:41:20,999 | INFO     | mean x: 1760321773.5
[2025-10-12 23:42:09] 2025-10-13 03:41:20,999 | INFO     | mean y: 2501431.0
[2025-10-12 23:42:09] 2025-10-13 03:41:20,999 | INFO     | -- intersect: 9960818622.660818
[2025-10-12 23:42:09] 2025-10-13 03:41:20,999 | INFO     | intersect: 9960818622.660818
[2025-10-12 23:42:09] 2025-10-13 03:41:21,000 | INFO     | chi2: 0.026787603312323015
[2025-10-12 23:42:09] 2025-10-13 03:41:21,000 | INFO     | -- intersect: 9960818622.660818
[2025-10-12 23:42:09] 2025-10-13 03:41:21,000 | INFO     | current memory leak: -5.66 B/s (using 146 data points, chi2=0.03)
[2025-10-12 23:42:09] 2025-10-13 03:41:21,000 | INFO     | could have reported an average CPU frequency of 2505 MHz (9 samples)
[2025-10-12 23:42:09] 2025-10-13 03:41:21,001 | INFO     | ..............................
[2025-10-12 23:42:09] 2025-10-13 03:41:21,001 | INFO     | . Timing measurements:
[2025-10-12 23:42:09] 2025-10-13 03:41:21,001 | INFO     | . get job = 0 s
[2025-10-12 23:42:09] 2025-10-13 03:41:21,001 | INFO     | . initial setup = 2 s
[2025-10-12 23:42:09] 2025-10-13 03:41:21,001 | INFO     | . payload setup = 4 s
[2025-10-12 23:42:09] 2025-10-13 03:41:21,001 | INFO     | . stage-in = 0 s
[2025-10-12 23:42:09] 2025-10-13 03:41:21,001 | INFO     | . payload execution = 10746 s
[2025-10-12 23:42:09] 2025-10-13 03:41:21,001 | INFO     | . stage-out = 0 s
[2025-10-12 23:42:09] 2025-10-13 03:41:21,001 | INFO     | . log creation = 0 s
[2025-10-12 23:42:09] 2025-10-13 03:41:21,002 | INFO     | ..............................
[2025-10-12 23:42:09] 2025-10-13 03:41:21,079 | INFO     | 
[2025-10-12 23:42:09] 2025-10-13 03:41:21,080 | INFO     | job summary report
[2025-10-12 23:42:09] 2025-10-13 03:41:21,080 | INFO     | --------------------------------------------------
[2025-10-12 23:42:09] 2025-10-13 03:41:21,080 | INFO     | PanDA job id: 6840749105
[2025-10-12 23:42:09] 2025-10-13 03:41:21,080 | INFO     | task id: 46676269
[2025-10-12 23:42:09] 2025-10-13 03:41:21,080 | INFO     | errors: (none)
[2025-10-12 23:42:09] 2025-10-13 03:41:21,081 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 23:42:09] 2025-10-13 03:41:21,081 | INFO     | pilot state: finished 
[2025-10-12 23:42:09] 2025-10-13 03:41:21,081 | INFO     | transexitcode: 0
[2025-10-12 23:42:09] 2025-10-13 03:41:21,081 | INFO     | exeerrorcode: 0
[2025-10-12 23:42:09] 2025-10-13 03:41:21,081 | INFO     | exeerrordiag: 
[2025-10-12 23:42:09] 2025-10-13 03:41:21,082 | INFO     | exitcode: 0
[2025-10-12 23:42:09] 2025-10-13 03:41:21,082 | INFO     | exitmsg: OK
[2025-10-12 23:42:09] 2025-10-13 03:41:21,082 | INFO     | cpuconsumptiontime: 80710 s
[2025-10-12 23:42:09] 2025-10-13 03:41:21,082 | INFO     | nevents: 400
[2025-10-12 23:42:09] 2025-10-13 03:41:21,082 | INFO     | neventsw: 0
[2025-10-12 23:42:09] 2025-10-13 03:41:21,082 | INFO     | pid: 25598
[2025-10-12 23:42:09] 2025-10-13 03:41:21,083 | INFO     | pgrp: 25598
[2025-10-12 23:42:09] 2025-10-13 03:41:21,083 | INFO     | corecount: 8
[2025-10-12 23:42:09] 2025-10-13 03:41:21,083 | INFO     | event service: False
[2025-10-12 23:42:09] 2025-10-13 03:41:21,083 | INFO     | sizes: {0: 2348857, 1: 2348885, 4: 2349147, 12: 2349175, 10755: 2378277, 10756: 2387459, 10759: 2387661}
[2025-10-12 23:42:09] 2025-10-13 03:41:21,083 | INFO     | --------------------------------------------------
[2025-10-12 23:42:09] 2025-10-13 03:41:21,083 | INFO     | 
[2025-10-12 23:42:09] 2025-10-13 03:41:21,084 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-12 23:42:09] 2025-10-13 03:41:21,099 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 23:42:09] 2025-10-13 03:41:21,099 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 23:42:09] 2025-10-13 03:41:21,099 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 23:42:09] 2025-10-13 03:41:21,099 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 23:42:09] 2025-10-13 03:41:21,100 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 23:42:09] 2025-10-13 03:41:21,100 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 23:42:09] 2025-10-13 03:41:21,100 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 23:42:09] 2025-10-13 03:41:21,100 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 23:42:09] 2025-10-13 03:41:21,100 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 23:42:09] 2025-10-13 03:41:21,101 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 23:42:09] 2025-10-13 03:41:21,101 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 23:42:09] 2025-10-13 03:41:21,101 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 23:42:09] 2025-10-13 03:41:21,101 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 23:42:09] 2025-10-13 03:41:21,101 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 23:42:09] 2025-10-13 03:41:21,102 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 23:42:09] 2025-10-13 03:41:21,102 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 23:42:09] 2025-10-13 03:41:21,102 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 23:42:09] 2025-10-13 03:41:21,102 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 23:42:09] 2025-10-13 03:41:21,102 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 23:42:09] 2025-10-13 03:41:21,103 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 23:42:09] 2025-10-13 03:41:21,103 | INFO     | job 6840749105 has completed (purged errors)
[2025-10-12 23:42:09] 2025-10-13 03:41:21,103 | INFO     | overall cleanup function is called
[2025-10-12 23:42:09] 2025-10-13 03:41:22,112 | INFO     | --- collectZombieJob: --- 10, [25598]
[2025-10-12 23:42:09] 2025-10-13 03:41:22,112 | INFO     | zombie collector waiting for pid 25598
[2025-10-12 23:42:09] 2025-10-13 03:41:22,112 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 23:42:09] 2025-10-13 03:41:22,112 | INFO     | collected zombie processes
[2025-10-12 23:42:09] 2025-10-13 03:41:22,112 | INFO     | will attempt to kill all subprocesses of pid=25598
[2025-10-12 23:42:09] 2025-10-13 03:41:22,218 | INFO     | process IDs to be killed: [25598] (in reverse order)
[2025-10-12 23:42:09] 2025-10-13 03:41:22,272 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 23:42:09] 2025-10-13 03:41:22,273 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 23:42:09] 2025-10-13 03:41:22,276 | INFO     | did not find any defunct processes belonging to 25598
[2025-10-12 23:42:09] 2025-10-13 03:41:22,278 | INFO     | did not find any defunct processes belonging to 25598
[2025-10-12 23:42:09] 2025-10-13 03:41:22,279 | INFO     | ready for new job
[2025-10-12 23:42:09] 2025-10-13 03:41:22,279 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 23:42:09] 2025-10-13 03:41:22,281 | INFO     | ***************************************
[2025-10-12 23:42:09] 2025-10-13 03:41:22,281 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 23:42:09] 2025-10-13 03:41:22,281 | INFO     | ***************************************
[2025-10-12 23:42:09] 2025-10-13 03:41:22,281 | INFO     | 
[2025-10-12 23:42:09] 2025-10-13 03:41:22,282 | INFO     | architecture information:
[2025-10-12 23:42:09] 2025-10-13 03:41:22,282 | INFO     | executing command: cat /etc/os-release
[2025-10-12 23:42:09] 2025-10-13 03:41:22,292 | INFO     | cat /etc/os-release:
[2025-10-12 23:42:09] NAME="CentOS Linux"
[2025-10-12 23:42:09] VERSION="7 (Core)"
[2025-10-12 23:42:09] ID="centos"
[2025-10-12 23:42:09] ID_LIKE="rhel fedora"
[2025-10-12 23:42:09] VERSION_ID="7"
[2025-10-12 23:42:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 23:42:09] ANSI_COLOR="0;31"
[2025-10-12 23:42:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 23:42:09] HOME_URL="https://www.centos.org/"
[2025-10-12 23:42:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 23:42:09] 
[2025-10-12 23:42:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 23:42:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 23:42:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 23:42:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 23:42:09] 
[2025-10-12 23:42:09] 2025-10-13 03:41:22,293 | INFO     | ***************************************
[2025-10-12 23:42:09] 2025-10-13 03:41:22,794 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-12 23:42:09] 2025-10-13 03:41:22,805 | INFO     | sufficient remaining disk space (28097642496 B)
[2025-10-12 23:42:09] 2025-10-13 03:41:22,813 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 23:42:09] 2025-10-13 03:41:22,814 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 23:42:09] 2025-10-13 03:41:22,814 | INFO     | update_server=False
[2025-10-12 23:42:09] 2025-10-13 03:41:22,814 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 23:42:09] 2025-10-13 03:41:22,814 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:42:09] 2025-10-13 03:41:22,814 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:42:09] 2025-10-13 03:41:22,815 | INFO     | aborting loop
[2025-10-12 23:42:09] 2025-10-13 03:41:23,187 | INFO     | all payload control threads have been joined
[2025-10-12 23:42:09] 2025-10-13 03:41:23,305 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 23:42:09] 2025-10-13 03:41:23,436 | INFO     | all job control threads have been joined
[2025-10-12 23:42:09] 2025-10-13 03:41:23,466 | INFO     | all data control threads have been joined
[2025-10-12 23:42:09] 2025-10-13 03:41:23,819 | INFO     | [job] retrieve thread has finished
[2025-10-12 23:42:09] 2025-10-13 03:41:23,820 | INFO     | [job] queue monitor thread has finished
[2025-10-12 23:42:09] 2025-10-13 03:41:23,821 | INFO     | [job] job monitor thread has finished
[2025-10-12 23:42:09] 2025-10-13 03:41:23,854 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 23:42:09] 2025-10-13 03:41:23,880 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 23:42:09] 2025-10-13 03:41:24,075 | INFO     | [job] validate thread has finished
[2025-10-12 23:42:09] 2025-10-13 03:41:24,148 | INFO     | [payload] validate_post thread has finished
[2025-10-12 23:42:09] 2025-10-13 03:41:24,193 | INFO     | [payload] control thread has finished
[2025-10-12 23:42:09] 2025-10-13 03:41:24,361 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 23:42:09] 2025-10-13 03:41:24,442 | INFO     | [job] control thread has finished
[2025-10-12 23:42:09] 2025-10-13 03:41:24,471 | INFO     | [data] control thread has finished
[2025-10-12 23:42:09] 2025-10-13 03:41:24,602 | INFO     | [data] copytool_in thread has finished
[2025-10-12 23:42:09] 2025-10-13 03:41:24,817 | INFO     | [payload] failed_post thread has finished
[2025-10-12 23:42:09] 2025-10-13 03:41:25,176 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 23:42:09] 2025-10-13 03:41:25,310 | INFO     | [data] copytool_out thread has finished
[2025-10-12 23:42:09] 2025-10-13 03:41:27,886 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 23:42:09] 2025-10-13 03:41:33,624 | INFO     | job.realtimelogging is not enabled
[2025-10-12 23:42:09] 2025-10-13 03:41:34,630 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 23:42:09] 2025-10-13 03:41:43,821 [wrapper] supervise_pilot (15 min periods counter: 13)
[2025-10-12 23:42:09] 2025-10-13 03:41:53,837 | INFO     | PID=18702 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 23:42:09] 2025-10-13 03:41:53,837 | INFO     | .. there are 3 such processes running
[2025-10-12 23:42:09] 2025-10-13 03:41:53,838 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 23:42:09] 2025-10-13 03:41:53,838 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 23:42:09] 2025-10-13 03:41:53,838 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 23:42:09] 2025-10-13 03:42:03,450 | INFO     | [monitor] cgroup control has ended
[2025-10-12 23:42:09] 2025-10-13 03:42:04,456 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140294532802368)>', '<ExcThread(monitor, started 140293949085440)>']
[2025-10-12 23:42:09] 2025-10-13 03:42:04,891 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 23:42:09] 2025-10-13 03:42:04,892 | INFO     | [monitor] control thread has ended
[2025-10-12 23:42:09] 2025-10-13 03:42:09,480 | INFO     | all workflow threads have been joined
[2025-10-12 23:42:09] 2025-10-13 03:42:09,481 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 23:42:09] 2025-10-13 03:42:09,481 | INFO     | traces error code: 0
[2025-10-12 23:42:09] 2025-10-13 03:42:09,482 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 23:42:09] 2025-10-13 03:42:09,596 [wrapper] ==== pilot stdout END ====
[2025-10-12 23:42:09] 2025-10-13 03:42:09,599 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 23:42:09] 2025-10-13 03:42:09,601 [wrapper] pilotpid: 18702
[2025-10-12 23:42:09] 2025-10-13 03:42:09,603 [wrapper] Pilot exit status: 0
[2025-10-12 23:42:09] 2025-10-13 03:42:09,612 [wrapper] pandaids: 6840749105
[2025-10-12 23:42:09] 2025-10-13 03:42:09,639 [wrapper] cleanup supervisor_pilot 16837 18703
[2025-10-12 23:42:09] 2025-10-13 03:42:09,642 [wrapper] Test setup, not cleaning
[2025-10-12 23:42:09] 2025-10-13 03:42:09,645 [wrapper] apfmon messages muted
[2025-10-12 23:42:09] 2025-10-13 03:42:09,647 [wrapper] ==== wrapper stdout END ====
[2025-10-12 23:42:09] 2025-10-13 03:42:09,649 [wrapper] ==== wrapper stderr END ====
[2025-10-12 23:42:09]  *** Error codes and diagnostics ***
[2025-10-12 23:42:09]     "exeErrorCode": 0,
[2025-10-12 23:42:09]     "exeErrorDiag": "",
[2025-10-12 23:42:09]     "pilotErrorCode": 0,
[2025-10-12 23:42:09]     "pilotErrorDiag": "",
[2025-10-12 23:42:09]  *** Listing of results directory ***
[2025-10-12 23:42:09] total 409984
[2025-10-12 23:42:09] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 16:23 pilot3.tar.gz
[2025-10-12 23:42:09] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 16:26 queuedata.json
[2025-10-12 23:42:09] -rwx------ 1 boincer umatlas     36292 Oct 12 16:26 runpilot2-wrapper.sh
[2025-10-12 23:42:09] -rw-r--r-- 1 boincer umatlas       100 Oct 12 20:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 23:42:09] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 20:41 run_atlas
[2025-10-12 23:42:09] -rw-r--r-- 1 boincer umatlas       105 Oct 12 20:41 job.xml
[2025-10-12 23:42:09] -rw-r--r-- 2 boincer umatlas 219731398 Oct 12 20:41 EVNT.46676267._004497.pool.root.1
[2025-10-12 23:42:09] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 20:41 start_atlas.sh
[2025-10-12 23:42:09] drwxrwx--x 2 boincer umatlas      4096 Oct 12 20:41 shared
[2025-10-12 23:42:09] -rw-r--r-- 2 boincer umatlas    569680 Oct 12 20:41 input.tar.gz
[2025-10-12 23:42:09] -rw-r--r-- 1 boincer umatlas         0 Oct 12 20:41 boinc_lockfile
[2025-10-12 23:42:09] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 20:41 pandaJob.out
[2025-10-12 23:42:09] -rw------- 1 boincer umatlas    975603 Oct 12 20:41 agis_schedconf.cvmfs.json
[2025-10-12 23:42:09] -rw------- 1 boincer umatlas   1560580 Oct 12 20:41 agis_ddmendpoints.agis.ALL.json
[2025-10-12 23:42:09] drwx------ 5 boincer umatlas      4096 Oct 12 20:41 pilot3
[2025-10-12 23:42:09] -rw-r--r-- 1 boincer umatlas      5952 Oct 12 23:37 init_data.xml
[2025-10-12 23:42:09] -rw------- 1 boincer umatlas 192311690 Oct 12 23:40 HITS.46676269._088626.pool.root.1
[2025-10-12 23:42:09] -rw------- 1 boincer umatlas      1053 Oct 12 23:41 memory_monitor_summary.json
[2025-10-12 23:42:09] -rw-r--r-- 1 boincer umatlas       530 Oct 12 23:41 boinc_task_state.xml
[2025-10-12 23:42:09] -rw------- 1 boincer umatlas    423166 Oct 12 23:41 log.46676269._088626.job.log.tgz.1
[2025-10-12 23:42:09] -rw------- 1 boincer umatlas      7855 Oct 12 23:41 heartbeat.json
[2025-10-12 23:42:09] -rw------- 1 boincer umatlas        95 Oct 12 23:41 pilot_heartbeat.json
[2025-10-12 23:42:09] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 23:42 boinc_mmap_file
[2025-10-12 23:42:09] -rw------- 1 boincer umatlas      4893 Oct 12 23:42 pilotlog.txt
[2025-10-12 23:42:09] -rw------- 1 boincer umatlas   1515166 Oct 12 23:42 log.46676269._088626.job.log.1
[2025-10-12 23:42:09] -rw------- 1 boincer umatlas       357 Oct 12 23:42 output.list
[2025-10-12 23:42:09] -rw-r--r-- 1 boincer umatlas       620 Oct 12 23:42 runtime_log
[2025-10-12 23:42:09] -rw------- 1 boincer umatlas   1955840 Oct 12 23:42 result.tar.gz
[2025-10-12 23:42:09] -rw-r--r-- 1 boincer umatlas      8704 Oct 12 23:42 runtime_log.err
[2025-10-12 23:42:09] -rw------- 1 boincer umatlas       660 Oct 12 23:42 IjWLDmkpHS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHSlNDmKbqUKo.diag
[2025-10-12 23:42:09] -rw-r--r-- 1 boincer umatlas        28 Oct 12 23:42 wrapper_checkpoint.txt
[2025-10-12 23:42:09] -rw-r--r-- 1 boincer umatlas     20845 Oct 12 23:42 stderr.txt
[2025-10-12 23:42:09] HITS file was successfully produced:
[2025-10-12 23:42:09] -rw------- 1 boincer umatlas 192311690 Oct 12 23:40 shared/HITS.pool.root.1
[2025-10-12 23:42:09]  *** Contents of shared directory: ***
[2025-10-12 23:42:09] total 404884
[2025-10-12 23:42:09] -rw-r--r-- 2 boincer umatlas 219731398 Oct 12 20:41 ATLAS.root_0
[2025-10-12 23:42:09] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 20:41 start_atlas.sh
[2025-10-12 23:42:09] -rw-r--r-- 2 boincer umatlas    569680 Oct 12 20:41 input.tar.gz
[2025-10-12 23:42:09] -rw------- 1 boincer umatlas 192311690 Oct 12 23:40 HITS.pool.root.1
[2025-10-12 23:42:09] -rw------- 1 boincer umatlas   1955840 Oct 12 23:42 result.tar.gz
23:42:11 (12321): run_atlas exited; CPU time 80844.184452
23:42:11 (12321): called boinc_finish(0)

</stderr_txt>
]]>

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