Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:15:03 (3501985): wrapper (7.7.26015): starting
06:15:03 (3501985): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 06:15:03] Arguments: --nthreads 12
[2025-10-13 06:15:03] Threads: 12
[2025-10-13 06:15:03] Checking for CVMFS
[2025-10-13 06:15:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 06:15:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 06:15:03] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 06:15:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 06:15:03] 2.13.2.0 8715 29995 234520 151648 0 57 40498000 46080000 6454 130560 0 203852460 99.892 56067165 21597 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-10-13 06:15:03] CVMFS is ok
[2025-10-13 06:15:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 06:15:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 06:15:04] Further information can be found at the LHC@home message board.
[2025-10-13 06:15:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 06:15:04] Checking for apptainer binary...
[2025-10-13 06:15:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 06:15:04] Running /usr/bin/apptainer --version
[2025-10-13 06:15:04] apptainer version 1.4.2-1.el9
[2025-10-13 06:15:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 06:15:04] mff2104.farm.particle.cz
[2025-10-13 06:15:04] apptainer works
[2025-10-13 06:15:04] Set ATHENA_PROC_NUMBER=12
[2025-10-13 06:15:04] Set ATHENA_CORE_NUMBER=12
[2025-10-13 06:15:04] Starting ATLAS job with PandaID=6840428755
[2025-10-13 06:15:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 07:12:28]  *** The last 200 lines of the pilot log: ***
[2025-10-13 07:12:28]  surl=/scratch/.boinc/slots/3/PanDA_Pilot-6840428755/log.46676269._084339.job.log.tgz.1
[2025-10-13 07:12:28]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/27/b0/log.46676269._084339.job.log.tgz.1
[2025-10-13 07:12:28]  workdir=None
[2025-10-13 07:12:28] ]
[2025-10-13 07:12:28] 2025-10-13 05:11:24,659 | INFO     | time since job start (3367s) is within the limit (172800.0s)
[2025-10-13 07:12:28] 2025-10-13 05:11:24,685 | INFO     | transferring file log.46676269._084339.job.log.tgz.1 from /scratch/.boinc/slots/3/PanDA_Pilot-6840428755/log.46676269._084339.job.log.tgz.1 to /scratch/.boinc/slot
[2025-10-13 07:12:28] 2025-10-13 05:11:24,686 | INFO     | executing command: /usr/bin/env mv /scratch/.boinc/slots/3/PanDA_Pilot-6840428755/log.46676269._084339.job.log.tgz.1 /scratch/.boinc/slots/3/log.46676269._084339.j
[2025-10-13 07:12:28] 2025-10-13 05:11:24,714 | INFO     | adding to output.list: log.46676269._084339.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/27/b0/log.46676269._084339.job.log.tg
[2025-10-13 07:12:28] 2025-10-13 05:11:24,715 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 07:12:28] 2025-10-13 05:11:24,715 | INFO     | summary of transferred files:
[2025-10-13 07:12:28] 2025-10-13 05:11:24,716 | INFO     |  -- lfn=log.46676269._084339.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 07:12:28] 2025-10-13 05:11:24,716 | INFO     | stage-out finished correctly
[2025-10-13 07:12:28] 2025-10-13 05:11:24,930 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 07:12:28] 2025-10-13 05:11:26,088 | INFO     | PID=3506049 has CPU usage=13.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-13 07:12:28] 2025-10-13 05:11:26,088 | INFO     | .. there are 8 such processes running
[2025-10-13 07:12:28] 2025-10-13 05:11:26,099 | INFO     | job 6840428755 has state=finished
[2025-10-13 07:12:28] 2025-10-13 05:11:26,099 | INFO     | preparing for final server update for job 6840428755 in state='finished'
[2025-10-13 07:12:28] 2025-10-13 05:11:26,552 | INFO     | monitor loop #249: job 0:6840428755 is in state 'finished'
[2025-10-13 07:12:28] 2025-10-13 05:11:26,553 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 07:12:28] 2025-10-13 05:11:26,675 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-13 07:12:28] 2025-10-13 05:11:26,676 | INFO     | this job has now completed (state=finished)
[2025-10-13 07:12:28] 2025-10-13 05:11:26,676 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 07:12:28] 2025-10-13 05:11:26,676 | INFO     | log transfer has been attempted: DONE
[2025-10-13 07:12:28] 2025-10-13 05:11:26,678 | INFO     | job 6840428755 has finished - writing final server update
[2025-10-13 07:12:28] 2025-10-13 05:11:26,679 | INFO     | total number of processed events: 400 (read)
[2025-10-13 07:12:28] 2025-10-13 05:11:26,679 | INFO     | executing command: lscpu
[2025-10-13 07:12:28] 2025-10-13 05:11:26,767 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 07:12:28] 2025-10-13 05:11:27,089 | INFO     | time since job start (3370s) is within the limit (172800.0s)
[2025-10-13 07:12:28] 2025-10-13 05:11:29,056 | INFO     | monitor loop #250: job 0:6840428755 is in state 'finished'
[2025-10-13 07:12:28] 2025-10-13 05:11:29,056 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 07:12:28] 2025-10-13 05:11:29,095 | INFO     | time since job start (3372s) is within the limit (172800.0s)
[2025-10-13 07:12:28] 2025-10-13 05:11:31,100 | INFO     | time since job start (3374s) is within the limit (172800.0s)
[2025-10-13 07:12:28] 2025-10-13 05:11:31,559 | INFO     | monitor loop #251: job 0:6840428755 is in state 'finished'
[2025-10-13 07:12:28] 2025-10-13 05:11:31,559 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 07:12:28] 2025-10-13 05:11:32,943 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 07:12:28] 2025-10-13 05:11:32,959 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2745.049791666667
[2025-10-13 07:12:28] 2025-10-13 05:11:32,977 | INFO     | using path: /scratch/.boinc/slots/3/PanDA_Pilot-6840428755/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 07:12:28] 2025-10-13 05:11:32,978 | INFO     | extracted standard info from prmon json
[2025-10-13 07:12:28] 2025-10-13 05:11:32,978 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 07:12:28] 2025-10-13 05:11:32,978 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 07:12:28] 2025-10-13 05:11:32,979 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 07:12:28] 2025-10-13 05:11:32,979 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 07:12:28] 2025-10-13 05:11:32,980 | INFO     | fitting pss+swap vs Time
[2025-10-13 07:12:28] 2025-10-13 05:11:32,981 | INFO     | sum of square deviations: 34277852.0
[2025-10-13 07:12:28] 2025-10-13 05:11:32,981 | INFO     | sum of deviations: -4466318191.000001
[2025-10-13 07:12:28] 2025-10-13 05:11:32,981 | INFO     | mean x: 1760330686.5
[2025-10-13 07:12:28] 2025-10-13 05:11:32,981 | INFO     | mean y: 2870099.2083333335
[2025-10-13 07:12:28] 2025-10-13 05:11:32,981 | INFO     | -- intersect: 229369545913.38916
[2025-10-13 07:12:28] 2025-10-13 05:11:32,981 | INFO     | intersect: 229369545913.38916
[2025-10-13 07:12:28] 2025-10-13 05:11:32,981 | INFO     | chi2: 0.0224264371356221
[2025-10-13 07:12:28] 2025-10-13 05:11:32,981 | INFO     | -- intersect: 229369545913.38916
[2025-10-13 07:12:28] 2025-10-13 05:11:32,982 | INFO     | current memory leak: -130.30 B/s (using 48 data points, chi2=0.02)
[2025-10-13 07:12:28] 2025-10-13 05:11:32,982 | INFO     | could have reported an average CPU frequency of 2760 MHz (5 samples)
[2025-10-13 07:12:28] 2025-10-13 05:11:32,982 | INFO     | ..............................
[2025-10-13 07:12:28] 2025-10-13 05:11:32,982 | INFO     | . Timing measurements:
[2025-10-13 07:12:28] 2025-10-13 05:11:32,982 | INFO     | . get job = 0 s
[2025-10-13 07:12:28] 2025-10-13 05:11:32,982 | INFO     | . initial setup = 1 s
[2025-10-13 07:12:28] 2025-10-13 05:11:32,982 | INFO     | . payload setup = 7 s
[2025-10-13 07:12:28] 2025-10-13 05:11:32,982 | INFO     | . stage-in = 0 s
[2025-10-13 07:12:28] 2025-10-13 05:11:32,983 | INFO     | . payload execution = 3338 s
[2025-10-13 07:12:28] 2025-10-13 05:11:32,983 | INFO     | . stage-out = 0 s
[2025-10-13 07:12:28] 2025-10-13 05:11:32,983 | INFO     | . log creation = 0 s
[2025-10-13 07:12:28] 2025-10-13 05:11:32,983 | INFO     | ..............................
[2025-10-13 07:12:28] 2025-10-13 05:11:33,081 | INFO     | 
[2025-10-13 07:12:28] 2025-10-13 05:11:33,081 | INFO     | job summary report
[2025-10-13 07:12:28] 2025-10-13 05:11:33,081 | INFO     | --------------------------------------------------
[2025-10-13 07:12:28] 2025-10-13 05:11:33,081 | INFO     | PanDA job id: 6840428755
[2025-10-13 07:12:28] 2025-10-13 05:11:33,081 | INFO     | task id: 46676269
[2025-10-13 07:12:28] 2025-10-13 05:11:33,082 | INFO     | errors: (none)
[2025-10-13 07:12:28] 2025-10-13 05:11:33,082 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 07:12:28] 2025-10-13 05:11:33,082 | INFO     | pilot state: finished 
[2025-10-13 07:12:28] 2025-10-13 05:11:33,082 | INFO     | transexitcode: 0
[2025-10-13 07:12:28] 2025-10-13 05:11:33,082 | INFO     | exeerrorcode: 0
[2025-10-13 07:12:28] 2025-10-13 05:11:33,082 | INFO     | exeerrordiag: 
[2025-10-13 07:12:28] 2025-10-13 05:11:33,082 | INFO     | exitcode: 0
[2025-10-13 07:12:28] 2025-10-13 05:11:33,082 | INFO     | exitmsg: OK
[2025-10-13 07:12:28] 2025-10-13 05:11:33,082 | INFO     | cpuconsumptiontime: 34770 s
[2025-10-13 07:12:28] 2025-10-13 05:11:33,082 | INFO     | nevents: 400
[2025-10-13 07:12:28] 2025-10-13 05:11:33,082 | INFO     | neventsw: 0
[2025-10-13 07:12:28] 2025-10-13 05:11:33,083 | INFO     | pid: 3513206
[2025-10-13 07:12:28] 2025-10-13 05:11:33,083 | INFO     | pgrp: 3513206
[2025-10-13 07:12:28] 2025-10-13 05:11:33,083 | INFO     | corecount: 12
[2025-10-13 07:12:28] 2025-10-13 05:11:33,083 | INFO     | event service: False
[2025-10-13 07:12:28] 2025-10-13 05:11:33,083 | INFO     | sizes: {0: 2348687, 1: 2348886, 7: 2349148, 12: 2349176, 3350: 2374717, 3351: 2383901, 3359: 2384071}
[2025-10-13 07:12:28] 2025-10-13 05:11:33,083 | INFO     | --------------------------------------------------
[2025-10-13 07:12:28] 2025-10-13 05:11:33,083 | INFO     | 
[2025-10-13 07:12:28] 2025-10-13 05:11:33,083 | INFO     | executing command: ls -lF /scratch/.boinc/slots/3
[2025-10-13 07:12:28] 2025-10-13 05:11:33,105 | INFO     | time since job start (3376s) is within the limit (172800.0s)
[2025-10-13 07:12:28] 2025-10-13 05:11:33,115 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 07:12:28] 2025-10-13 05:11:33,115 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 07:12:28] 2025-10-13 05:11:33,115 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 07:12:28] 2025-10-13 05:11:33,115 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 07:12:28] 2025-10-13 05:11:33,115 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 07:12:28] 2025-10-13 05:11:33,115 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 07:12:28] 2025-10-13 05:11:33,115 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 07:12:28] 2025-10-13 05:11:33,115 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 07:12:28] 2025-10-13 05:11:33,116 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 07:12:28] 2025-10-13 05:11:33,116 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 07:12:28] 2025-10-13 05:11:33,116 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 07:12:28] 2025-10-13 05:11:33,116 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 07:12:28] 2025-10-13 05:11:33,116 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 07:12:28] 2025-10-13 05:11:33,116 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 07:12:28] 2025-10-13 05:11:33,116 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 07:12:28] 2025-10-13 05:11:33,116 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 07:12:28] 2025-10-13 05:11:33,116 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 07:12:28] 2025-10-13 05:11:33,116 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 07:12:28] 2025-10-13 05:11:33,116 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 07:12:28] 2025-10-13 05:11:33,117 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 07:12:28] 2025-10-13 05:11:33,117 | INFO     | job 6840428755 has completed (purged errors)
[2025-10-13 07:12:28] 2025-10-13 05:11:33,117 | INFO     | overall cleanup function is called
[2025-10-13 07:12:28] 2025-10-13 05:11:34,127 | INFO     | --- collectZombieJob: --- 10, [3513206]
[2025-10-13 07:12:28] 2025-10-13 05:11:34,128 | INFO     | zombie collector waiting for pid 3513206
[2025-10-13 07:12:28] 2025-10-13 05:11:34,128 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 07:12:28] 2025-10-13 05:11:34,128 | INFO     | collected zombie processes
[2025-10-13 07:12:28] 2025-10-13 05:11:34,128 | INFO     | will attempt to kill all subprocesses of pid=3513206
[2025-10-13 07:12:28] 2025-10-13 05:11:34,484 | INFO     | process IDs to be killed: [3513206] (in reverse order)
[2025-10-13 07:12:28] 2025-10-13 05:11:34,610 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 07:12:28] 2025-10-13 05:11:34,610 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 07:12:28] 2025-10-13 05:11:34,623 | INFO     | did not find any defunct processes belonging to 3513206
[2025-10-13 07:12:28] 2025-10-13 05:11:34,632 | INFO     | did not find any defunct processes belonging to 3513206
[2025-10-13 07:12:28] 2025-10-13 05:11:34,632 | INFO     | ready for new job
[2025-10-13 07:12:28] 2025-10-13 05:11:34,632 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 07:12:28] 2025-10-13 05:11:34,634 | INFO     | ***************************************
[2025-10-13 07:12:28] 2025-10-13 05:11:34,634 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 07:12:28] 2025-10-13 05:11:34,635 | INFO     | ***************************************
[2025-10-13 07:12:28] 2025-10-13 05:11:34,635 | INFO     | 
[2025-10-13 07:12:28] 2025-10-13 05:11:34,641 | INFO     | architecture information:
[2025-10-13 07:12:28] 2025-10-13 05:11:34,641 | INFO     | executing command: cat /etc/os-release
[2025-10-13 07:12:28] 2025-10-13 05:11:34,666 | INFO     | cat /etc/os-release:
[2025-10-13 07:12:28] NAME="CentOS Linux"
[2025-10-13 07:12:28] VERSION="7 (Core)"
[2025-10-13 07:12:28] ID="centos"
[2025-10-13 07:12:28] ID_LIKE="rhel fedora"
[2025-10-13 07:12:28] VERSION_ID="7"
[2025-10-13 07:12:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 07:12:28] ANSI_COLOR="0;31"
[2025-10-13 07:12:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 07:12:28] HOME_URL="https://www.centos.org/"
[2025-10-13 07:12:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 07:12:28] 
[2025-10-13 07:12:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 07:12:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 07:12:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 07:12:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 07:12:28] 
[2025-10-13 07:12:28] 2025-10-13 05:11:34,667 | INFO     | ***************************************
[2025-10-13 07:12:28] 2025-10-13 05:11:35,169 | INFO     | executing command: df -mP /scratch/.boinc/slots/3
[2025-10-13 07:12:28] 2025-10-13 05:11:35,195 | INFO     | sufficient remaining disk space (1681393713152 B)
[2025-10-13 07:12:28] 2025-10-13 05:11:35,196 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 07:12:28] 2025-10-13 05:11:35,196 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 07:12:28] 2025-10-13 05:11:35,196 | INFO     | update_server=False
[2025-10-13 07:12:28] 2025-10-13 05:11:35,196 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 07:12:28] 2025-10-13 05:11:35,196 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 07:12:28] 2025-10-13 05:11:35,197 | INFO     | aborting loop
[2025-10-13 07:12:28] 2025-10-13 05:11:35,322 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 07:12:28] 2025-10-13 05:11:35,551 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 07:12:28] 2025-10-13 05:11:35,724 | INFO     | all data control threads have been joined
[2025-10-13 07:12:28] 2025-10-13 05:11:36,067 | INFO     | all payload control threads have been joined
[2025-10-13 07:12:28] 2025-10-13 05:11:36,202 | INFO     | [job] retrieve thread has finished
[2025-10-13 07:12:28] 2025-10-13 05:11:36,202 | INFO     | [job] job monitor thread has finished
[2025-10-13 07:12:28] 2025-10-13 05:11:36,237 | INFO     | all job control threads have been joined
[2025-10-13 07:12:28] 2025-10-13 05:11:36,551 | INFO     | [payload] failed_post thread has finished
[2025-10-13 07:12:28] 2025-10-13 05:11:36,726 | INFO     | [data] control thread has finished
[2025-10-13 07:12:28] 2025-10-13 05:11:36,757 | INFO     | [job] validate thread has finished
[2025-10-13 07:12:28] 2025-10-13 05:11:36,820 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 07:12:28] 2025-10-13 05:11:36,988 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 07:12:28] 2025-10-13 05:11:37,069 | INFO     | [payload] control thread has finished
[2025-10-13 07:12:28] 2025-10-13 05:11:37,183 | INFO     | [data] copytool_in thread has finished
[2025-10-13 07:12:28] 2025-10-13 05:11:37,243 | INFO     | [job] control thread has finished
[2025-10-13 07:12:28] 2025-10-13 05:11:37,258 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 07:12:28] 2025-10-13 05:11:37,328 | INFO     | [data] copytool_out thread has finished
[2025-10-13 07:12:28] 2025-10-13 05:11:37,717 | INFO     | [payload] validate_post thread has finished
[2025-10-13 07:12:28] 2025-10-13 05:11:38,092 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 07:12:28] 2025-10-13 05:11:39,097 | INFO     | [job] queue monitor thread has finished
[2025-10-13 07:12:28] 2025-10-13 05:11:39,560 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 07:12:28] 2025-10-13 05:11:46,039 | INFO     | job.realtimelogging is not enabled
[2025-10-13 07:12:28] 2025-10-13 05:11:47,044 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 07:12:28] 2025-10-13 05:12:06,609 | INFO     | PID=3506049 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 07:12:28] 2025-10-13 05:12:06,609 | INFO     | .. there are 8 such processes running
[2025-10-13 07:12:28] 2025-10-13 05:12:06,609 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 07:12:28] 2025-10-13 05:12:06,609 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 07:12:28] 2025-10-13 05:12:06,609 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 07:12:28] 2025-10-13 05:12:22,305 | INFO     | [monitor] cgroup control has ended
[2025-10-13 07:12:28] 2025-10-13 05:12:23,030 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139694149928768)>', '<ExcThread(monitor, started 139693492508416)>']
[2025-10-13 07:12:28] 2025-10-13 05:12:23,686 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 07:12:28] 2025-10-13 05:12:23,686 | INFO     | [monitor] control thread has ended
[2025-10-13 07:12:28] 2025-10-13 05:12:28,055 | INFO     | all workflow threads have been joined
[2025-10-13 07:12:28] 2025-10-13 05:12:28,056 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 07:12:28] 2025-10-13 05:12:28,056 | INFO     | traces error code: 0
[2025-10-13 07:12:28] 2025-10-13 05:12:28,056 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 07:12:28] 2025-10-13 05:12:28,192 [wrapper] ==== pilot stdout END ====
[2025-10-13 07:12:28] 2025-10-13 05:12:28,196 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 07:12:28] 2025-10-13 05:12:28,199 [wrapper] pilotpid: 3506049
[2025-10-13 07:12:28] 2025-10-13 05:12:28,202 [wrapper] Pilot exit status: 0
[2025-10-13 07:12:28] 2025-10-13 05:12:28,218 [wrapper] pandaids: 6840428755
[2025-10-13 07:12:28] 2025-10-13 05:12:28,301 [wrapper] cleanup supervisor_pilot 3696028 3506050
[2025-10-13 07:12:28] 2025-10-13 05:12:28,305 [wrapper] Test setup, not cleaning
[2025-10-13 07:12:28] 2025-10-13 05:12:28,308 [wrapper] apfmon messages muted
[2025-10-13 07:12:28] 2025-10-13 05:12:28,313 [wrapper] ==== wrapper stdout END ====
[2025-10-13 07:12:28] 2025-10-13 05:12:28,317 [wrapper] ==== wrapper stderr END ====
[2025-10-13 07:12:28]  *** Error codes and diagnostics ***
[2025-10-13 07:12:28]     "exeErrorCode": 0,
[2025-10-13 07:12:28]     "exeErrorDiag": "",
[2025-10-13 07:12:28]     "pilotErrorCode": 0,
[2025-10-13 07:12:28]     "pilotErrorDiag": "",
[2025-10-13 07:12:28]  *** Listing of results directory ***
[2025-10-13 07:12:28] total 415724
[2025-10-13 07:12:28] -rw-r--r-- 1 boinc boinc    557409 Oct 12 18:49 pilot3.tar.gz
[2025-10-13 07:12:28] -rw-r--r-- 1 boinc boinc      5112 Oct 12 19:07 queuedata.json
[2025-10-13 07:12:28] -rwx------ 1 boinc boinc     36292 Oct 12 19:09 runpilot2-wrapper.sh
[2025-10-13 07:12:28] -rw-r--r-- 1 boinc boinc       100 Oct 13 06:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 07:12:28] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 06:15 run_atlas
[2025-10-13 07:12:28] -rw-r--r-- 1 boinc boinc       105 Oct 13 06:15 job.xml
[2025-10-13 07:12:28] -rw-r--r-- 1 boinc boinc      6665 Oct 13 06:15 init_data.xml
[2025-10-13 07:12:28] -rw-r--r-- 2 boinc boinc 223630462 Oct 13 06:15 EVNT.46676267._004798.pool.root.1
[2025-10-13 07:12:28] -rw-r--r-- 2 boinc boinc     15120 Oct 13 06:15 start_atlas.sh
[2025-10-13 07:12:28] drwxrwx--x 2 boinc boinc      4096 Oct 13 06:15 shared
[2025-10-13 07:12:28] -rw-r--r-- 2 boinc boinc    569688 Oct 13 06:15 input.tar.gz
[2025-10-13 07:12:28] -rw-r--r-- 1 boinc boinc         0 Oct 13 06:15 boinc_lockfile
[2025-10-13 07:12:28] -rw-r--r-- 1 boinc boinc      2550 Oct 13 06:15 pandaJob.out
[2025-10-13 07:12:28] -rw------- 1 boinc boinc    974373 Oct 13 06:15 agis_schedconf.cvmfs.json
[2025-10-13 07:12:28] -rw------- 1 boinc boinc   1560580 Oct 13 06:15 agis_ddmendpoints.agis.ALL.json
[2025-10-13 07:12:28] drwx------ 5 boinc boinc      4096 Oct 13 06:15 pilot3
[2025-10-13 07:12:28] -rw------- 1 boinc boinc 196404511 Oct 13 07:10 HITS.46676269._084339.pool.root.1
[2025-10-13 07:12:28] -rw-r--r-- 1 boinc boinc       530 Oct 13 07:10 boinc_task_state.xml
[2025-10-13 07:12:28] -rw------- 1 boinc boinc      1022 Oct 13 07:11 memory_monitor_summary.json
[2025-10-13 07:12:28] -rw------- 1 boinc boinc        95 Oct 13 07:11 pilot_heartbeat.json
[2025-10-13 07:12:28] -rw------- 1 boinc boinc    374096 Oct 13 07:11 log.46676269._084339.job.log.tgz.1
[2025-10-13 07:12:28] -rw------- 1 boinc boinc      7788 Oct 13 07:11 heartbeat.json
[2025-10-13 07:12:28] -rw-r--r-- 1 boinc boinc      8192 Oct 13 07:12 boinc_mmap_file
[2025-10-13 07:12:28] -rw-r--r-- 1 boinc boinc        27 Oct 13 07:12 wrapper_checkpoint.txt
[2025-10-13 07:12:28] -rw------- 1 boinc boinc      4898 Oct 13 07:12 pilotlog.txt
[2025-10-13 07:12:28] -rw------- 1 boinc boinc    508774 Oct 13 07:12 log.46676269._084339.job.log.1
[2025-10-13 07:12:28] -rw------- 1 boinc boinc       357 Oct 13 07:12 output.list
[2025-10-13 07:12:28] -rw-r--r-- 1 boinc boinc       620 Oct 13 07:12 runtime_log
[2025-10-13 07:12:28] -rw------- 1 boinc boinc    901120 Oct 13 07:12 result.tar.gz
[2025-10-13 07:12:28] -rw-r--r-- 1 boinc boinc      8764 Oct 13 07:12 runtime_log.err
[2025-10-13 07:12:28] -rw------- 1 boinc boinc       663 Oct 13 07:12 guoNDmKkES8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmemkNDmW6DIwn.diag
[2025-10-13 07:12:28] -rw-r--r-- 1 boinc boinc     22338 Oct 13 07:12 stderr.txt
[2025-10-13 07:12:28] HITS file was successfully produced:
[2025-10-13 07:12:28] -rw------- 1 boinc boinc 196404511 Oct 13 07:10 shared/HITS.pool.root.1
[2025-10-13 07:12:28]  *** Contents of shared directory: ***
[2025-10-13 07:12:28] total 411656
[2025-10-13 07:12:28] -rw-r--r-- 2 boinc boinc 223630462 Oct 13 06:15 ATLAS.root_0
[2025-10-13 07:12:28] -rw-r--r-- 2 boinc boinc     15120 Oct 13 06:15 start_atlas.sh
[2025-10-13 07:12:28] -rw-r--r-- 2 boinc boinc    569688 Oct 13 06:15 input.tar.gz
[2025-10-13 07:12:28] -rw------- 1 boinc boinc 196404511 Oct 13 07:10 HITS.pool.root.1
[2025-10-13 07:12:28] -rw------- 1 boinc boinc    901120 Oct 13 07:12 result.tar.gz
07:12:29 (3501985): run_atlas exited; CPU time 34829.560879
07:12:29 (3501985): called boinc_finish(0)

</stderr_txt>
]]>

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