Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:52:13 (3216952): wrapper (7.7.26015): starting
12:52:13 (3216952): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 12:52:13] Arguments: --nthreads 3
[2025-10-13 12:52:13] Threads: 3
[2025-10-13 12:52:13] Checking for CVMFS
[2025-10-13 12:52:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 12:52:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 12:52:13] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 12:52:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 12:52:13] 2.9.2.0 1568863 5551 83896 151658 3 57 28627618 36864000 0 130560 0 4334559 99.991 193200 861 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 12:52:13] CVMFS is ok
[2025-10-13 12:52:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 12:52:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 12:52:13] Further information can be found at the LHC@home message board.
[2025-10-13 12:52:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 12:52:13] Checking for apptainer binary...
[2025-10-13 12:52:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 12:52:13] Running /usr/bin/apptainer --version
[2025-10-13 12:52:13] apptainer version 1.4.1-1.1
[2025-10-13 12:52:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 12:52:13] madmaxA273
[2025-10-13 12:52:13] apptainer works
[2025-10-13 12:52:13] Set ATHENA_PROC_NUMBER=3
[2025-10-13 12:52:13] Set ATHENA_CORE_NUMBER=3
[2025-10-13 12:52:13] Starting ATLAS job with PandaID=6840536942
[2025-10-13 12:52:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 14:14:29]  *** The last 200 lines of the pilot log: ***
[2025-10-13 14:14:29] 2025-10-13 12:13:25,792 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 14:14:29] 2025-10-13 12:13:25,792 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 14:14:29] 2025-10-13 12:13:25,841 | INFO     | all data control threads have been joined
[2025-10-13 14:14:29] 2025-10-13 12:13:25,969 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 14:14:29] 2025-10-13 12:13:26,085 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 14:14:29] 2025-10-13 12:13:26,085 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 14:14:29] 2025-10-13 12:13:26,085 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 14:14:29] 2025-10-13 12:13:26,086 | INFO     | will abort loop
[2025-10-13 14:14:29] 2025-10-13 12:13:26,298 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 14:14:29] 2025-10-13 12:13:26,509 | INFO     | all job control threads have been joined
[2025-10-13 14:14:29] 2025-10-13 12:13:26,551 | INFO     | all payload control threads have been joined
[2025-10-13 14:14:29] 2025-10-13 12:13:26,797 | INFO     | [job] retrieve thread has finished
[2025-10-13 14:14:29] 2025-10-13 12:13:26,798 | INFO     | [job] queue monitor thread has finished
[2025-10-13 14:14:29] 2025-10-13 12:13:26,847 | INFO     | [data] control thread has finished
[2025-10-13 14:14:29] 2025-10-13 12:13:26,851 | INFO     | [payload] failed_post thread has finished
[2025-10-13 14:14:29] 2025-10-13 12:13:27,091 | INFO     | [job] job monitor thread has finished
[2025-10-13 14:14:29] 2025-10-13 12:13:27,315 | INFO     | [job] validate thread has finished
[2025-10-13 14:14:29] 2025-10-13 12:13:27,370 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 14:14:29] 2025-10-13 12:13:27,376 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 14:14:29] 2025-10-13 12:13:27,514 | INFO     | [job] control thread has finished
[2025-10-13 14:14:29] 2025-10-13 12:13:27,557 | INFO     | [payload] control thread has finished
[2025-10-13 14:14:29] 2025-10-13 12:13:27,783 | INFO     | [payload] validate_post thread has finished
[2025-10-13 14:14:29] 2025-10-13 12:13:28,051 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 14:14:29] 2025-10-13 12:13:28,292 | INFO     | [data] copytool_in thread has finished
[2025-10-13 14:14:29] 2025-10-13 12:13:28,304 | INFO     | [data] copytool_out thread has finished
[2025-10-13 14:14:29] 2025-10-13 12:13:29,975 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 14:14:29] 2025-10-13 12:13:36,245 | INFO     | job.realtimelogging is not enabled
[2025-10-13 14:14:29] 2025-10-13 12:13:37,251 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 14:14:29] 2025-10-13 12:14:24,192 | INFO     | [monitor] cgroup control has ended
[2025-10-13 14:14:29] 2025-10-13 12:14:24,627 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140634825557824)>', '<ExcThread(monitor, started 140634040022784)>']
[2025-10-13 14:14:29] 2025-10-13 12:14:25,088 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 14:14:29] 2025-10-13 12:14:25,089 | INFO     | [monitor] control thread has ended
[2025-10-13 14:14:29] 2025-10-13 12:14:29,651 | INFO     | all workflow threads have been joined
[2025-10-13 14:14:29] 2025-10-13 12:14:29,652 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 14:14:29] 2025-10-13 12:14:29,652 | INFO     | traces error code: 0
[2025-10-13 14:14:29] 2025-10-13 12:14:29,652 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 14:14:29] 2025-10-13 12:14:29,700 [wrapper] ==== pilot stdout END ====
[2025-10-13 14:14:29] 2025-10-13 12:14:29,702 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 14:14:29] 2025-10-13 12:14:29,705 [wrapper] pilotpid: 3220668
[2025-10-13 14:14:29] 2025-10-13 12:14:29,707 [wrapper] Pilot exit status: 0
[2025-10-13 14:14:29] 2025-10-13 12:14:29,714 [wrapper] pandaids: 6840536942
[2025-10-13 14:14:29] 2025-10-13 12:14:29,730 [wrapper] cleanup supervisor_pilot 3239237 3220669
[2025-10-13 14:14:29] 2025-10-13 12:14:29,733 [wrapper] Test setup, not cleaning
[2025-10-13 14:14:29] 2025-10-13 12:14:29,735 [wrapper] apfmon messages muted
[2025-10-13 14:14:29] 2025-10-13 12:14:29,737 [wrapper] ==== wrapper stdout END ====
[2025-10-13 14:14:29] 2025-10-13 12:14:29,739 [wrapper] ==== wrapper stderr END ====
[2025-10-13 14:14:29]  *** Error codes and diagnostics ***
[2025-10-13 14:14:29]     "exeErrorCode": 0,
[2025-10-13 14:14:29]     "exeErrorDiag": "",
[2025-10-13 14:14:29]     "pilotErrorCode": 0,
[2025-10-13 14:14:29]     "pilotErrorDiag": "",
[2025-10-13 14:14:29]  *** Listing of results directory ***
[2025-10-13 14:14:29] total 405232
[2025-10-13 14:14:29] -rw-r--r-- 1 boinc boinc    557409 Oct 12 20:20 pilot3.tar.gz
[2025-10-13 14:14:29] -rw-r--r-- 1 boinc boinc      5112 Oct 12 20:40 queuedata.json
[2025-10-13 14:14:29] -rwx------ 1 boinc boinc     36292 Oct 12 20:41 runpilot2-wrapper.sh
[2025-10-13 14:14:29] -rw-r--r-- 1 boinc boinc       100 Oct 13 12:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 14:14:29] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 12:52 run_atlas
[2025-10-13 14:14:29] -rw-r--r-- 1 boinc boinc       105 Oct 13 12:52 job.xml
[2025-10-13 14:14:29] -rw-r--r-- 2 boinc boinc 221440111 Oct 13 12:52 EVNT.46676267._004414.pool.root.1
[2025-10-13 14:14:29] -rw-r--r-- 2 boinc boinc    569684 Oct 13 12:52 input.tar.gz
[2025-10-13 14:14:29] -rw-r--r-- 2 boinc boinc     15120 Oct 13 12:52 start_atlas.sh
[2025-10-13 14:14:29] drwxrwx--x 2 boinc boinc      4096 Oct 13 12:52 shared
[2025-10-13 14:14:29] -rw-r--r-- 1 boinc boinc         0 Oct 13 12:52 boinc_setup_complete
[2025-10-13 14:14:29] -rw-r--r-- 1 boinc boinc      6443 Oct 13 12:52 init_data.xml
[2025-10-13 14:14:29] -rw-r--r-- 1 boinc boinc         0 Oct 13 12:52 boinc_lockfile
[2025-10-13 14:14:29] -rw-r--r-- 1 boinc boinc      2550 Oct 13 12:52 pandaJob.out
[2025-10-13 14:14:29] -rw------- 1 boinc boinc    972497 Oct 13 12:52 agis_schedconf.cvmfs.json
[2025-10-13 14:14:29] -rw------- 1 boinc boinc   1560580 Oct 13 12:52 agis_ddmendpoints.agis.ALL.json
[2025-10-13 14:14:29] drwx------ 5 boinc boinc      4096 Oct 13 12:52 pilot3
[2025-10-13 14:14:29] -rw------- 1 boinc boinc        95 Oct 13 14:12 pilot_heartbeat.json
[2025-10-13 14:14:29] -rw------- 1 boinc boinc 187705541 Oct 13 14:12 HITS.46676269._086361.pool.root.1
[2025-10-13 14:14:29] -rw-r--r-- 1 boinc boinc       529 Oct 13 14:12 boinc_task_state.xml
[2025-10-13 14:14:29] -rw------- 1 boinc boinc      1033 Oct 13 14:13 memory_monitor_summary.json
[2025-10-13 14:14:29] -rw------- 1 boinc boinc    248189 Oct 13 14:13 log.46676269._086361.job.log.tgz.1
[2025-10-13 14:14:29] -rw------- 1 boinc boinc      7770 Oct 13 14:13 heartbeat.json
[2025-10-13 14:14:29] -rw-r--r-- 1 boinc boinc      8192 Oct 13 14:14 boinc_mmap_file
[2025-10-13 14:14:29] -rw-r--r-- 1 boinc boinc        27 Oct 13 14:14 wrapper_checkpoint.txt
[2025-10-13 14:14:29] -rw------- 1 boinc boinc      4814 Oct 13 14:14 pilotlog.txt
[2025-10-13 14:14:29] -rw------- 1 boinc boinc    715693 Oct 13 14:14 log.46676269._086361.job.log.1
[2025-10-13 14:14:29] -rw------- 1 boinc boinc       357 Oct 13 14:14 output.list
[2025-10-13 14:14:29] -rw-r--r-- 1 boinc boinc       620 Oct 13 14:14 runtime_log
[2025-10-13 14:14:29] -rw------- 1 boinc boinc    983040 Oct 13 14:14 result.tar.gz
[2025-10-13 14:14:29] -rw-r--r-- 1 boinc boinc      8797 Oct 13 14:14 runtime_log.err
[2025-10-13 14:14:29] -rw------- 1 boinc boinc       662 Oct 13 14:14 LMmMDmZBGS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmm6kNDmYteeEm.diag
[2025-10-13 14:14:29] -rw-r--r-- 1 boinc boinc      7081 Oct 13 14:14 stderr.txt
[2025-10-13 14:14:29] HITS file was successfully produced:
[2025-10-13 14:14:29] -rw------- 1 boinc boinc 187705541 Oct 13 14:12 shared/HITS.pool.root.1
[2025-10-13 14:14:29]  *** Contents of shared directory: ***
[2025-10-13 14:14:29] total 401104
[2025-10-13 14:14:29] -rw-r--r-- 2 boinc boinc 221440111 Oct 13 12:52 ATLAS.root_0
[2025-10-13 14:14:29] -rw-r--r-- 2 boinc boinc    569684 Oct 13 12:52 input.tar.gz
[2025-10-13 14:14:29] -rw-r--r-- 2 boinc boinc     15120 Oct 13 12:52 start_atlas.sh
[2025-10-13 14:14:29] -rw------- 1 boinc boinc 187705541 Oct 13 14:12 HITS.pool.root.1
[2025-10-13 14:14:29] -rw------- 1 boinc boinc    983040 Oct 13 14:14 result.tar.gz
14:14:31 (3216952): run_atlas exited; CPU time 13922.388843
14:14:31 (3216952): called boinc_finish(0)

</stderr_txt>
]]>

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