Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:56:21 (2517529): wrapper (7.7.26015): starting
16:56:21 (2517529): wrapper: running run_atlas (--nthreads 6)
[2025-10-13 16:56:21] Arguments: --nthreads 6
[2025-10-13 16:56:21] Threads: 6
[2025-10-13 16:56:21] Checking for CVMFS
[2025-10-13 16:56:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 16:56:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 16:56:21] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 16:56:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 16:56:22] 2.11.5.0 3102357 4990 93140 151653 0 57 42876760 52428801 929 130560 0 11269231 99.997 176490 15 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.35.143:3126 1
[2025-10-13 16:56:22] CVMFS is ok
[2025-10-13 16:56:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 16:56:22] Checking for apptainer binary...
[2025-10-13 16:56:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 16:56:22] Running /usr/bin/apptainer --version
[2025-10-13 16:56:22] apptainer version 1.3.6-1.el9
[2025-10-13 16:56:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 16:56:22] testio002
[2025-10-13 16:56:22] apptainer works
[2025-10-13 16:56:22] Set ATHENA_PROC_NUMBER=6
[2025-10-13 16:56:22] Set ATHENA_CORE_NUMBER=6
[2025-10-13 16:56:22] Starting ATLAS job with PandaID=6840851835
[2025-10-13 16:56:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 18:12:09]  *** The last 200 lines of the pilot log: ***
[2025-10-13 18:12:09] 2025-10-13 09:11:14,500 | INFO     | time since job start (4466s) is within the limit (172800.0s)
[2025-10-13 18:12:09] 2025-10-13 09:11:16,505 | INFO     | time since job start (4468s) is within the limit (172800.0s)
[2025-10-13 18:12:09] 2025-10-13 09:11:16,756 | INFO     | monitor loop #351: job 0:6840851835 is in state 'finished'
[2025-10-13 18:12:09] 2025-10-13 09:11:16,756 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 18:12:09] 2025-10-13 09:11:18,510 | INFO     | time since job start (4470s) is within the limit (172800.0s)
[2025-10-13 18:12:09] 2025-10-13 09:11:19,259 | INFO     | monitor loop #352: job 0:6840851835 is in state 'finished'
[2025-10-13 18:12:09] 2025-10-13 09:11:19,259 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 18:12:09] 2025-10-13 09:11:20,515 | INFO     | time since job start (4472s) is within the limit (172800.0s)
[2025-10-13 18:12:09] 2025-10-13 09:11:20,515 | INFO     | 4494s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-13 18:12:09] 2025-10-13 09:11:21,762 | INFO     | monitor loop #353: job 0:6840851835 is in state 'finished'
[2025-10-13 18:12:09] 2025-10-13 09:11:21,762 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 18:12:09] 2025-10-13 09:11:22,520 | INFO     | time since job start (4474s) is within the limit (172800.0s)
[2025-10-13 18:12:09] 2025-10-13 09:11:23,596 | INFO     | PID=2521318 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 18:12:09] 2025-10-13 09:11:23,596 | INFO     | .. there are 2 such processes running
[2025-10-13 18:12:09] 2025-10-13 09:11:24,265 | INFO     | monitor loop #354: job 0:6840851835 is in state 'finished'
[2025-10-13 18:12:09] 2025-10-13 09:11:24,265 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 18:12:09] 2025-10-13 09:11:24,596 | INFO     | time since job start (4476s) is within the limit (172800.0s)
[2025-10-13 18:12:09] 2025-10-13 09:11:25,511 [wrapper] supervise_pilot (15 min periods counter: 6)
[2025-10-13 18:12:09] 2025-10-13 09:11:26,601 | INFO     | time since job start (4478s) is within the limit (172800.0s)
[2025-10-13 18:12:09] 2025-10-13 09:11:26,768 | INFO     | monitor loop #355: job 0:6840851835 is in state 'finished'
[2025-10-13 18:12:09] 2025-10-13 09:11:26,768 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 18:12:09] 2025-10-13 09:11:28,606 | INFO     | time since job start (4480s) is within the limit (172800.0s)
[2025-10-13 18:12:09] 2025-10-13 09:11:29,271 | INFO     | monitor loop #356: job 0:6840851835 is in state 'finished'
[2025-10-13 18:12:09] 2025-10-13 09:11:29,271 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 18:12:09] 2025-10-13 09:11:30,611 | INFO     | time since job start (4482s) is within the limit (172800.0s)
[2025-10-13 18:12:09] 2025-10-13 09:11:31,774 | INFO     | monitor loop #357: job 0:6840851835 is in state 'finished'
[2025-10-13 18:12:09] 2025-10-13 09:11:31,774 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 18:12:09] 2025-10-13 09:11:32,616 | INFO     | time since job start (4484s) is within the limit (172800.0s)
[2025-10-13 18:12:09] 2025-10-13 09:11:34,277 | INFO     | monitor loop #358: job 0:6840851835 is in state 'finished'
[2025-10-13 18:12:09] 2025-10-13 09:11:34,277 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 18:12:09] 2025-10-13 09:11:34,621 | INFO     | time since job start (4486s) is within the limit (172800.0s)
[2025-10-13 18:12:09] 2025-10-13 09:11:36,626 | INFO     | time since job start (4488s) is within the limit (172800.0s)
[2025-10-13 18:12:09] 2025-10-13 09:11:36,780 | INFO     | monitor loop #359: job 0:6840851835 is in state 'finished'
[2025-10-13 18:12:09] 2025-10-13 09:11:36,780 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 18:12:09] 2025-10-13 09:11:36,881 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-13 18:12:09] 2025-10-13 09:11:36,882 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 4191.774062500001
[2025-10-13 18:12:09] 2025-10-13 09:11:36,884 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6840851835/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 18:12:09] 2025-10-13 09:11:36,884 | INFO     | extracted standard info from prmon json
[2025-10-13 18:12:09] 2025-10-13 09:11:36,884 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 18:12:09] 2025-10-13 09:11:36,884 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 18:12:09] 2025-10-13 09:11:36,884 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 18:12:09] 2025-10-13 09:11:36,884 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 18:12:09] 2025-10-13 09:11:36,885 | INFO     | fitting pss+swap vs Time
[2025-10-13 18:12:09] 2025-10-13 09:11:36,886 | INFO     | sum of square deviations: 85136480.0
[2025-10-13 18:12:09] 2025-10-13 09:11:36,886 | INFO     | sum of deviations: 273962468.0
[2025-10-13 18:12:09] 2025-10-13 09:11:36,886 | INFO     | mean x: 1760344484.0
[2025-10-13 18:12:09] 2025-10-13 09:11:36,886 | INFO     | mean y: 2452518.9846153846
[2025-10-13 18:12:09] 2025-10-13 09:11:36,886 | INFO     | -- intersect: -5662196986.924327
[2025-10-13 18:12:09] 2025-10-13 09:11:36,886 | INFO     | intersect: -5662196986.924327
[2025-10-13 18:12:09] 2025-10-13 09:11:36,886 | INFO     | chi2: 0.010096386996794948
[2025-10-13 18:12:09] 2025-10-13 09:11:36,886 | INFO     | -- intersect: -5662196986.924327
[2025-10-13 18:12:09] 2025-10-13 09:11:36,886 | INFO     | current memory leak: 3.22 B/s (using 65 data points, chi2=0.01)
[2025-10-13 18:12:09] 2025-10-13 09:11:36,886 | INFO     | could have reported an average CPU frequency of 4165 MHz (6 samples)
[2025-10-13 18:12:09] 2025-10-13 09:11:36,886 | INFO     | ..............................
[2025-10-13 18:12:09] 2025-10-13 09:11:36,887 | INFO     | . Timing measurements:
[2025-10-13 18:12:09] 2025-10-13 09:11:36,887 | INFO     | . get job = 0 s
[2025-10-13 18:12:09] 2025-10-13 09:11:36,887 | INFO     | . initial setup = 23 s
[2025-10-13 18:12:09] 2025-10-13 09:11:36,887 | INFO     | . payload setup = 2 s
[2025-10-13 18:12:09] 2025-10-13 09:11:36,887 | INFO     | . stage-in = 0 s
[2025-10-13 18:12:09] 2025-10-13 09:11:36,887 | INFO     | . payload execution = 4371 s
[2025-10-13 18:12:09] 2025-10-13 09:11:36,887 | INFO     | . stage-out = 0 s
[2025-10-13 18:12:09] 2025-10-13 09:11:36,887 | INFO     | . log creation = 0 s
[2025-10-13 18:12:09] 2025-10-13 09:11:36,887 | INFO     | ..............................
[2025-10-13 18:12:09] 2025-10-13 09:11:37,236 | INFO     | 
[2025-10-13 18:12:09] 2025-10-13 09:11:37,237 | INFO     | job summary report
[2025-10-13 18:12:09] 2025-10-13 09:11:37,237 | INFO     | --------------------------------------------------
[2025-10-13 18:12:09] 2025-10-13 09:11:37,237 | INFO     | PanDA job id: 6840851835
[2025-10-13 18:12:09] 2025-10-13 09:11:37,237 | INFO     | task id: 46676269
[2025-10-13 18:12:09] 2025-10-13 09:11:37,237 | INFO     | errors: (none)
[2025-10-13 18:12:09] 2025-10-13 09:11:37,237 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 18:12:09] 2025-10-13 09:11:37,237 | INFO     | pilot state: finished 
[2025-10-13 18:12:09] 2025-10-13 09:11:37,237 | INFO     | transexitcode: 0
[2025-10-13 18:12:09] 2025-10-13 09:11:37,237 | INFO     | exeerrorcode: 0
[2025-10-13 18:12:09] 2025-10-13 09:11:37,237 | INFO     | exeerrordiag: 
[2025-10-13 18:12:09] 2025-10-13 09:11:37,237 | INFO     | exitcode: 0
[2025-10-13 18:12:09] 2025-10-13 09:11:37,237 | INFO     | exitmsg: OK
[2025-10-13 18:12:09] 2025-10-13 09:11:37,237 | INFO     | cpuconsumptiontime: 23916 s
[2025-10-13 18:12:09] 2025-10-13 09:11:37,237 | INFO     | nevents: 400
[2025-10-13 18:12:09] 2025-10-13 09:11:37,237 | INFO     | neventsw: 0
[2025-10-13 18:12:09] 2025-10-13 09:11:37,237 | INFO     | pid: 2528069
[2025-10-13 18:12:09] 2025-10-13 09:11:37,237 | INFO     | pgrp: 2528069
[2025-10-13 18:12:09] 2025-10-13 09:11:37,237 | INFO     | corecount: 6
[2025-10-13 18:12:09] 2025-10-13 09:11:37,237 | INFO     | event service: False
[2025-10-13 18:12:09] 2025-10-13 09:11:37,237 | INFO     | sizes: {0: 2348857, 2: 2349119, 11: 2349147, 4378: 2375275, 4379: 2384329, 4475: 2384467}
[2025-10-13 18:12:09] 2025-10-13 09:11:37,238 | INFO     | --------------------------------------------------
[2025-10-13 18:12:09] 2025-10-13 09:11:37,238 | INFO     | 
[2025-10-13 18:12:09] 2025-10-13 09:11:37,238 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-10-13 18:12:09] 2025-10-13 09:11:37,247 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 18:12:09] 2025-10-13 09:11:37,247 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 18:12:09] 2025-10-13 09:11:37,247 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 18:12:09] 2025-10-13 09:11:37,247 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 18:12:09] 2025-10-13 09:11:37,247 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 18:12:09] 2025-10-13 09:11:37,247 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 18:12:09] 2025-10-13 09:11:37,247 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 18:12:09] 2025-10-13 09:11:37,247 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 18:12:09] 2025-10-13 09:11:37,247 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 18:12:09] 2025-10-13 09:11:37,247 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 18:12:09] 2025-10-13 09:11:37,247 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 18:12:09] 2025-10-13 09:11:37,248 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 18:12:09] 2025-10-13 09:11:37,248 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 18:12:09] 2025-10-13 09:11:37,248 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 18:12:09] 2025-10-13 09:11:37,248 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 18:12:09] 2025-10-13 09:11:37,248 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 18:12:09] 2025-10-13 09:11:37,248 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 18:12:09] 2025-10-13 09:11:37,248 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 18:12:09] 2025-10-13 09:11:37,248 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 18:12:09] 2025-10-13 09:11:37,248 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 18:12:09] 2025-10-13 09:11:37,248 | INFO     | job 6840851835 has completed (purged errors)
[2025-10-13 18:12:09] 2025-10-13 09:11:37,248 | INFO     | overall cleanup function is called
[2025-10-13 18:12:09] 2025-10-13 09:11:38,254 | INFO     | --- collectZombieJob: --- 10, [2528069]
[2025-10-13 18:12:09] 2025-10-13 09:11:38,254 | INFO     | zombie collector waiting for pid 2528069
[2025-10-13 18:12:09] 2025-10-13 09:11:38,254 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 18:12:09] 2025-10-13 09:11:38,254 | INFO     | collected zombie processes
[2025-10-13 18:12:09] 2025-10-13 09:11:38,254 | INFO     | will attempt to kill all subprocesses of pid=2528069
[2025-10-13 18:12:09] 2025-10-13 09:11:38,306 | INFO     | process IDs to be killed: [2528069] (in reverse order)
[2025-10-13 18:12:09] 2025-10-13 09:11:38,329 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 18:12:09] 2025-10-13 09:11:38,329 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 18:12:09] 2025-10-13 09:11:38,331 | INFO     | did not find any defunct processes belonging to 2528069
[2025-10-13 18:12:09] 2025-10-13 09:11:38,333 | INFO     | did not find any defunct processes belonging to 2528069
[2025-10-13 18:12:09] 2025-10-13 09:11:38,333 | INFO     | ready for new job
[2025-10-13 18:12:09] 2025-10-13 09:11:38,333 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 18:12:09] 2025-10-13 09:11:38,334 | INFO     | ***************************************
[2025-10-13 18:12:09] 2025-10-13 09:11:38,334 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 18:12:09] 2025-10-13 09:11:38,334 | INFO     | ***************************************
[2025-10-13 18:12:09] 2025-10-13 09:11:38,334 | INFO     | 
[2025-10-13 18:12:09] 2025-10-13 09:11:38,335 | INFO     | architecture information:
[2025-10-13 18:12:09] 2025-10-13 09:11:38,335 | INFO     | executing command: cat /etc/os-release
[2025-10-13 18:12:09] 2025-10-13 09:11:38,342 | INFO     | cat /etc/os-release:
[2025-10-13 18:12:09] NAME="CentOS Linux"
[2025-10-13 18:12:09] VERSION="7 (Core)"
[2025-10-13 18:12:09] ID="centos"
[2025-10-13 18:12:09] ID_LIKE="rhel fedora"
[2025-10-13 18:12:09] VERSION_ID="7"
[2025-10-13 18:12:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 18:12:09] ANSI_COLOR="0;31"
[2025-10-13 18:12:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 18:12:09] HOME_URL="https://www.centos.org/"
[2025-10-13 18:12:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 18:12:09] 
[2025-10-13 18:12:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 18:12:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 18:12:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 18:12:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 18:12:09] 
[2025-10-13 18:12:09] 2025-10-13 09:11:38,342 | INFO     | ***************************************
[2025-10-13 18:12:09] 2025-10-13 09:11:38,845 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-10-13 18:12:09] 2025-10-13 09:11:38,853 | INFO     | sufficient remaining disk space (301065043968 B)
[2025-10-13 18:12:09] 2025-10-13 09:11:38,853 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 18:12:09] 2025-10-13 09:11:38,853 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 18:12:09] 2025-10-13 09:11:38,853 | INFO     | update_server=False
[2025-10-13 18:12:09] 2025-10-13 09:11:38,853 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 18:12:09] 2025-10-13 09:11:38,853 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 18:12:09] 2025-10-13 09:11:39,283 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 18:12:09] 2025-10-13 09:11:39,283 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 18:12:09] 2025-10-13 09:11:39,283 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 18:12:09] 2025-10-13 09:11:39,283 | INFO     | will abort loop
[2025-10-13 18:12:09] 2025-10-13 09:11:39,330 | INFO     | all job control threads have been joined
[2025-10-13 18:12:09] 2025-10-13 09:11:39,669 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 18:12:09] 2025-10-13 09:11:39,858 | INFO     | [job] retrieve thread has finished
[2025-10-13 18:12:09] 2025-10-13 09:11:39,858 | INFO     | [job] queue monitor thread has finished
[2025-10-13 18:12:09] 2025-10-13 09:11:39,947 | INFO     | all data control threads have been joined
[2025-10-13 18:12:09] 2025-10-13 09:11:39,963 | INFO     | all payload control threads have been joined
[2025-10-13 18:12:09] 2025-10-13 09:11:40,001 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 18:12:09] 2025-10-13 09:11:40,048 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 18:12:09] 2025-10-13 09:11:40,079 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 18:12:09] 2025-10-13 09:11:40,288 | INFO     | [job] job monitor thread has finished
[2025-10-13 18:12:09] 2025-10-13 09:11:40,335 | INFO     | [job] control thread has finished
[2025-10-13 18:12:09] 2025-10-13 09:11:40,394 | INFO     | [payload] validate_post thread has finished
[2025-10-13 18:12:09] 2025-10-13 09:11:40,742 | INFO     | [data] copytool_in thread has finished
[2025-10-13 18:12:09] 2025-10-13 09:11:40,952 | INFO     | [data] control thread has finished
[2025-10-13 18:12:09] 2025-10-13 09:11:40,968 | INFO     | [payload] control thread has finished
[2025-10-13 18:12:09] 2025-10-13 09:11:41,032 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 18:12:09] 2025-10-13 09:11:41,034 | INFO     | [payload] failed_post thread has finished
[2025-10-13 18:12:09] 2025-10-13 09:11:41,319 | INFO     | [job] validate thread has finished
[2025-10-13 18:12:09] 2025-10-13 09:11:41,674 | INFO     | [data] copytool_out thread has finished
[2025-10-13 18:12:09] 2025-10-13 09:11:42,199 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 18:12:09] 2025-10-13 09:11:46,204 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 18:12:09] 2025-10-13 09:11:55,866 | INFO     | [monitor] cgroup control has ended
[2025-10-13 18:12:09] 2025-10-13 09:11:56,047 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140201186522944)>', '<ExcThread(monitor, started 140200474830592)>']
[2025-10-13 18:12:09] 2025-10-13 09:12:01,072 | INFO     | all workflow threads have been joined
[2025-10-13 18:12:09] 2025-10-13 09:12:01,072 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 18:12:09] 2025-10-13 09:12:01,072 | INFO     | traces error code: 0
[2025-10-13 18:12:09] 2025-10-13 09:12:01,072 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 18:12:09] 2025-10-13 09:12:09,732 | INFO     | PID=2521318 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 18:12:09] 2025-10-13 09:12:09,736 | INFO     | .. there are 2 such processes running
[2025-10-13 18:12:09] 2025-10-13 09:12:09,736 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 18:12:09] 2025-10-13 09:12:09,736 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 18:12:09] 2025-10-13 09:12:09,736 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 18:12:09] 2025-10-13 09:12:09,736 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 18:12:09] 2025-10-13 09:12:09,736 | INFO     | [monitor] control thread has ended
[2025-10-13 18:12:09] 2025-10-13 09:12:09,783 [wrapper] ==== pilot stdout END ====
[2025-10-13 18:12:09] 2025-10-13 09:12:09,784 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 18:12:09] 2025-10-13 09:12:09,784 [wrapper] pilotpid: 2521318
[2025-10-13 18:12:09] 2025-10-13 09:12:09,785 [wrapper] Pilot exit status: 0
[2025-10-13 18:12:09] 2025-10-13 09:12:09,789 [wrapper] pandaids: 6840851835
[2025-10-13 18:12:09] 2025-10-13 09:12:09,800 [wrapper] cleanup supervisor_pilot 2565919 2521319
[2025-10-13 18:12:09] 2025-10-13 09:12:09,801 [wrapper] Test setup, not cleaning
[2025-10-13 18:12:09] 2025-10-13 09:12:09,802 [wrapper] apfmon messages muted
[2025-10-13 18:12:09] 2025-10-13 09:12:09,803 [wrapper] ==== wrapper stdout END ====
[2025-10-13 18:12:09] 2025-10-13 09:12:09,804 [wrapper] ==== wrapper stderr END ====
[2025-10-13 18:12:09]  *** Error codes and diagnostics ***
[2025-10-13 18:12:09]     "exeErrorCode": 0,
[2025-10-13 18:12:09]     "exeErrorDiag": "",
[2025-10-13 18:12:09]     "pilotErrorCode": 0,
[2025-10-13 18:12:09]     "pilotErrorDiag": "",
[2025-10-13 18:12:09]  *** Listing of results directory ***
[2025-10-13 18:12:09] total 410140
[2025-10-13 18:12:09] -rw-r--r--. 1 boinc boinc    557409 Oct 13 06:57 pilot3.tar.gz
[2025-10-13 18:12:09] -rwx------. 1 boinc boinc     36292 Oct 13 07:24 runpilot2-wrapper.sh
[2025-10-13 18:12:09] -rw-r--r--. 1 boinc boinc      5112 Oct 13 07:24 queuedata.json
[2025-10-13 18:12:09] -rw-r--r--. 1 boinc boinc       100 Oct 13 16:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 18:12:09] -rwxr-xr-x. 1 boinc boinc      7986 Oct 13 16:56 run_atlas
[2025-10-13 18:12:09] -rw-r--r--. 1 boinc boinc       105 Oct 13 16:56 job.xml
[2025-10-13 18:12:09] -rw-r--r--. 2 boinc boinc     15120 Oct 13 16:56 start_atlas.sh
[2025-10-13 18:12:09] drwxrwx--x. 2 boinc boinc        68 Oct 13 16:56 shared
[2025-10-13 18:12:09] -rw-r--r--. 2 boinc boinc    569680 Oct 13 16:56 input.tar.gz
[2025-10-13 18:12:09] -rw-r--r--. 1 boinc boinc      9628 Oct 13 16:56 init_data.xml
[2025-10-13 18:12:09] -rw-r--r--. 2 boinc boinc 221097592 Oct 13 16:56 EVNT.46676267._004612.pool.root.1
[2025-10-13 18:12:09] -rw-r--r--. 1 boinc boinc         0 Oct 13 16:56 boinc_lockfile
[2025-10-13 18:12:09] -rw-r--r--. 1 boinc boinc      2550 Oct 13 16:56 pandaJob.out
[2025-10-13 18:12:09] -rw-------. 1 boinc boinc    972849 Oct 13 16:56 agis_schedconf.cvmfs.json
[2025-10-13 18:12:09] -rw-------. 1 boinc boinc   1560580 Oct 13 16:56 agis_ddmendpoints.agis.ALL.json
[2025-10-13 18:12:09] drwx------. 5 boinc boinc      4096 Oct 13 16:56 pilot3
[2025-10-13 18:12:09] -rw-------. 1 boinc boinc 193086423 Oct 13 18:09 HITS.46676269._091014.pool.root.1
[2025-10-13 18:12:09] -rw-r--r--. 1 boinc boinc       529 Oct 13 18:09 boinc_task_state.xml
[2025-10-13 18:12:09] -rw-------. 1 boinc boinc      1027 Oct 13 18:09 memory_monitor_summary.json
[2025-10-13 18:12:09] -rw-------. 1 boinc boinc    288406 Oct 13 18:10 log.46676269._091014.job.log.tgz.1
[2025-10-13 18:12:09] -rw-------. 1 boinc boinc      7785 Oct 13 18:11 heartbeat.json
[2025-10-13 18:12:09] -rw-r--r--. 1 boinc boinc        27 Oct 13 18:11 wrapper_checkpoint.txt
[2025-10-13 18:12:09] -rw-r--r--. 1 boinc boinc      8192 Oct 13 18:11 boinc_mmap_file
[2025-10-13 18:12:09] -rw-------. 1 boinc boinc       822 Oct 13 18:12 pilotlog.txt
[2025-10-13 18:12:09] -rw-------. 1 boinc boinc        95 Oct 13 18:12 pilot_heartbeat.json
[2025-10-13 18:12:09] -rw-------. 1 boinc boinc    666147 Oct 13 18:12 log.46676269._091014.job.log.1
[2025-10-13 18:12:09] -rw-------. 1 boinc boinc       357 Oct 13 18:12 output.list
[2025-10-13 18:12:09] -rw-r--r--. 1 boinc boinc       620 Oct 13 18:12 runtime_log
[2025-10-13 18:12:09] -rw-------. 1 boinc boinc    972800 Oct 13 18:12 result.tar.gz
[2025-10-13 18:12:09] -rw-------. 1 boinc boinc       642 Oct 13 18:12 UhGNDmbfJS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm5qlNDmtY5Msm.diag
[2025-10-13 18:12:09] -rw-r--r--. 1 boinc boinc      8661 Oct 13 18:12 runtime_log.err
[2025-10-13 18:12:09] -rw-r--r--. 1 boinc boinc     21916 Oct 13 18:12 stderr.txt
[2025-10-13 18:12:09] HITS file was successfully produced:
[2025-10-13 18:12:09] -rw-------. 1 boinc boinc 193086423 Oct 13 18:09 shared/HITS.pool.root.1
[2025-10-13 18:12:09]  *** Contents of shared directory: ***
[2025-10-13 18:12:09] total 406008
[2025-10-13 18:12:09] -rw-r--r--. 2 boinc boinc     15120 Oct 13 16:56 start_atlas.sh
[2025-10-13 18:12:09] -rw-r--r--. 2 boinc boinc    569680 Oct 13 16:56 input.tar.gz
[2025-10-13 18:12:09] -rw-r--r--. 2 boinc boinc 221097592 Oct 13 16:56 ATLAS.root_0
[2025-10-13 18:12:09] -rw-------. 1 boinc boinc 193086423 Oct 13 18:09 HITS.pool.root.1
[2025-10-13 18:12:09] -rw-------. 1 boinc boinc    972800 Oct 13 18:12 result.tar.gz
18:12:10 (2517529): run_atlas exited; CPU time 23938.689353
18:12:10 (2517529): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN