Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:12:49 (16913): wrapper (7.7.26015): starting
20:12:49 (16913): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 20:12:49] Arguments: --nthreads 8
[2025-10-12 20:12:49] Threads: 8
[2025-10-12 20:12:49] Checking for CVMFS
[2025-10-12 20:12:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 20:12:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 20:12:50] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 20:12:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 20:12:50] 2.11.2.0 25047 53454 110528 151641 2 188 15516407 20275201 917 130560 0 64215957 99.979 2414954 24056 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 20:12:50] CVMFS is ok
[2025-10-12 20:12:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 20:12:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 20:12:50] Further information can be found at the LHC@home message board.
[2025-10-12 20:12:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 20:12:50] Checking for apptainer binary...
[2025-10-12 20:12:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 20:12:50] Running /usr/bin/apptainer --version
[2025-10-12 20:12:50] apptainer version 1.3.2-1.el7
[2025-10-12 20:12:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 20:12:50] c-205-37.aglt2.org
[2025-10-12 20:12:50] apptainer works
[2025-10-12 20:12:50] Set ATHENA_PROC_NUMBER=8
[2025-10-12 20:12:50] Set ATHENA_CORE_NUMBER=8
[2025-10-12 20:12:51] Starting ATLAS job with PandaID=6839927926
[2025-10-12 20:12:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 21:23:15]  *** The last 200 lines of the pilot log: ***
[2025-10-12 21:23:15]  status=None
[2025-10-12 21:23:15]  status_code=0
[2025-10-12 21:23:15]  storage_token=
[2025-10-12 21:23:15]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6839927926/log.46676269._077465.job.log.tgz.1
[2025-10-12 21:23:15]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e9/12/log.46676269._077465.job.log.tgz.1
[2025-10-12 21:23:15]  workdir=None
[2025-10-12 21:23:15] ]
[2025-10-12 21:23:15] 2025-10-13 01:22:21,354 | INFO     | transferring file log.46676269._077465.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6839927926/log.46676269._077465.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 21:23:15] 2025-10-13 01:22:21,354 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6839927926/log.46676269._077465.job.log.tgz.1 /tmp/boinchome/slots/1/log.46676269._077465.job
[2025-10-12 21:23:15] 2025-10-13 01:22:21,375 | INFO     | adding to output.list: log.46676269._077465.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e9/12/log.46676269._077465.job.log.tg
[2025-10-12 21:23:15] 2025-10-13 01:22:21,376 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 21:23:15] 2025-10-13 01:22:21,376 | INFO     | summary of transferred files:
[2025-10-12 21:23:15] 2025-10-13 01:22:21,376 | INFO     |  -- lfn=log.46676269._077465.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 21:23:15] 2025-10-13 01:22:21,376 | INFO     | stage-out finished correctly
[2025-10-12 21:23:15] 2025-10-13 01:22:21,429 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 21:23:15] 2025-10-13 01:22:22,595 | INFO     | monitor loop #309: job 0:6839927926 is in state 'finished'
[2025-10-12 21:23:15] 2025-10-13 01:22:22,595 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:23:15] 2025-10-13 01:22:23,182 | INFO     | time since job start (4160s) is within the limit (172800.0s)
[2025-10-12 21:23:15] 2025-10-13 01:22:23,641 | INFO     | job 6839927926 has state=finished
[2025-10-12 21:23:15] 2025-10-13 01:22:23,641 | INFO     | preparing for final server update for job 6839927926 in state='finished'
[2025-10-12 21:23:15] 2025-10-13 01:22:23,642 | INFO     | this job has now completed (state=finished)
[2025-10-12 21:23:15] 2025-10-13 01:22:23,642 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 21:23:15] 2025-10-13 01:22:23,642 | INFO     | log transfer has been attempted: DONE
[2025-10-12 21:23:15] 2025-10-13 01:22:23,642 | INFO     | job 6839927926 has finished - writing final server update
[2025-10-12 21:23:15] 2025-10-13 01:22:23,643 | INFO     | total number of processed events: 400 (read)
[2025-10-12 21:23:15] 2025-10-13 01:22:23,644 | INFO     | executing command: lscpu
[2025-10-12 21:23:15] 2025-10-13 01:22:23,677 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 21:23:15] 2025-10-13 01:22:25,098 | INFO     | monitor loop #310: job 0:6839927926 is in state 'finished'
[2025-10-12 21:23:15] 2025-10-13 01:22:25,098 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:23:15] 2025-10-13 01:22:25,187 | INFO     | time since job start (4162s) is within the limit (172800.0s)
[2025-10-12 21:23:15] 2025-10-13 01:22:27,192 | INFO     | time since job start (4164s) is within the limit (172800.0s)
[2025-10-12 21:23:15] 2025-10-13 01:22:27,601 | INFO     | monitor loop #311: job 0:6839927926 is in state 'finished'
[2025-10-12 21:23:15] 2025-10-13 01:22:27,602 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:23:15] 2025-10-13 01:22:28,041 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 21:23:15] 2025-10-13 01:22:28,045 | INFO     | found 16 cores (8 cores per socket, 2 sockets) , CPU MHz: 2077.9077500000003
[2025-10-12 21:23:15] 2025-10-13 01:22:28,049 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6839927926/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 21:23:15] 2025-10-13 01:22:28,050 | INFO     | extracted standard info from prmon json
[2025-10-12 21:23:15] 2025-10-13 01:22:28,050 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 21:23:15] 2025-10-13 01:22:28,050 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 21:23:15] 2025-10-13 01:22:28,050 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 21:23:15] 2025-10-13 01:22:28,051 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 21:23:15] 2025-10-13 01:22:28,053 | INFO     | fitting pss+swap vs Time
[2025-10-12 21:23:15] 2025-10-13 01:22:28,053 | INFO     | sum of square deviations: 70364110.0
[2025-10-12 21:23:15] 2025-10-13 01:22:28,053 | INFO     | sum of deviations: 455390254.00000006
[2025-10-12 21:23:15] 2025-10-13 01:22:28,053 | INFO     | mean x: 1760316543.0
[2025-10-12 21:23:15] 2025-10-13 01:22:28,054 | INFO     | mean y: 2515094.229508197
[2025-10-12 21:23:15] 2025-10-13 01:22:28,054 | INFO     | -- intersect: -11390096815.978296
[2025-10-12 21:23:15] 2025-10-13 01:22:28,054 | INFO     | intersect: -11390096815.978296
[2025-10-12 21:23:15] 2025-10-13 01:22:28,054 | INFO     | chi2: 0.004257192747199308
[2025-10-12 21:23:15] 2025-10-13 01:22:28,054 | INFO     | -- intersect: -11390096815.978296
[2025-10-12 21:23:15] 2025-10-13 01:22:28,054 | INFO     | current memory leak: 6.47 B/s (using 61 data points, chi2=0.00)
[2025-10-12 21:23:15] 2025-10-13 01:22:28,055 | INFO     | could have reported an average CPU frequency of 2237 MHz (6 samples)
[2025-10-12 21:23:15] 2025-10-13 01:22:28,055 | INFO     | ..............................
[2025-10-12 21:23:15] 2025-10-13 01:22:28,055 | INFO     | . Timing measurements:
[2025-10-12 21:23:15] 2025-10-13 01:22:28,055 | INFO     | . get job = 0 s
[2025-10-12 21:23:15] 2025-10-13 01:22:28,055 | INFO     | . initial setup = 2 s
[2025-10-12 21:23:15] 2025-10-13 01:22:28,055 | INFO     | . payload setup = 5 s
[2025-10-12 21:23:15] 2025-10-13 01:22:28,055 | INFO     | . stage-in = 0 s
[2025-10-12 21:23:15] 2025-10-13 01:22:28,056 | INFO     | . payload execution = 4132 s
[2025-10-12 21:23:15] 2025-10-13 01:22:28,056 | INFO     | . stage-out = 0 s
[2025-10-12 21:23:15] 2025-10-13 01:22:28,056 | INFO     | . log creation = 0 s
[2025-10-12 21:23:15] 2025-10-13 01:22:28,056 | INFO     | ..............................
[2025-10-12 21:23:15] 2025-10-13 01:22:28,135 | INFO     | 
[2025-10-12 21:23:15] 2025-10-13 01:22:28,135 | INFO     | job summary report
[2025-10-12 21:23:15] 2025-10-13 01:22:28,136 | INFO     | --------------------------------------------------
[2025-10-12 21:23:15] 2025-10-13 01:22:28,136 | INFO     | PanDA job id: 6839927926
[2025-10-12 21:23:15] 2025-10-13 01:22:28,136 | INFO     | task id: 46676269
[2025-10-12 21:23:15] 2025-10-13 01:22:28,136 | INFO     | errors: (none)
[2025-10-12 21:23:15] 2025-10-13 01:22:28,136 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 21:23:15] 2025-10-13 01:22:28,136 | INFO     | pilot state: finished 
[2025-10-12 21:23:15] 2025-10-13 01:22:28,136 | INFO     | transexitcode: 0
[2025-10-12 21:23:15] 2025-10-13 01:22:28,136 | INFO     | exeerrorcode: 0
[2025-10-12 21:23:15] 2025-10-13 01:22:28,137 | INFO     | exeerrordiag: 
[2025-10-12 21:23:15] 2025-10-13 01:22:28,137 | INFO     | exitcode: 0
[2025-10-12 21:23:15] 2025-10-13 01:22:28,137 | INFO     | exitmsg: OK
[2025-10-12 21:23:15] 2025-10-13 01:22:28,137 | INFO     | cpuconsumptiontime: 30792 s
[2025-10-12 21:23:15] 2025-10-13 01:22:28,137 | INFO     | nevents: 400
[2025-10-12 21:23:15] 2025-10-13 01:22:28,137 | INFO     | neventsw: 0
[2025-10-12 21:23:15] 2025-10-13 01:22:28,137 | INFO     | pid: 27201
[2025-10-12 21:23:15] 2025-10-13 01:22:28,137 | INFO     | pgrp: 27201
[2025-10-12 21:23:15] 2025-10-13 01:22:28,137 | INFO     | corecount: 8
[2025-10-12 21:23:15] 2025-10-13 01:22:28,138 | INFO     | event service: False
[2025-10-12 21:23:15] 2025-10-13 01:22:28,138 | INFO     | sizes: {0: 2348635, 1: 2348834, 5: 2349096, 11: 2349152, 4142: 2375158, 4143: 2384340, 4150: 2384478}
[2025-10-12 21:23:15] 2025-10-13 01:22:28,138 | INFO     | --------------------------------------------------
[2025-10-12 21:23:15] 2025-10-13 01:22:28,138 | INFO     | 
[2025-10-12 21:23:15] 2025-10-13 01:22:28,138 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-12 21:23:15] 2025-10-13 01:22:28,161 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 21:23:15] 2025-10-13 01:22:28,161 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 21:23:15] 2025-10-13 01:22:28,161 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 21:23:15] 2025-10-13 01:22:28,161 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 21:23:15] 2025-10-13 01:22:28,161 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 21:23:15] 2025-10-13 01:22:28,162 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 21:23:15] 2025-10-13 01:22:28,162 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 21:23:15] 2025-10-13 01:22:28,162 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 21:23:15] 2025-10-13 01:22:28,162 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 21:23:15] 2025-10-13 01:22:28,162 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 21:23:15] 2025-10-13 01:22:28,162 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 21:23:15] 2025-10-13 01:22:28,162 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 21:23:15] 2025-10-13 01:22:28,162 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 21:23:15] 2025-10-13 01:22:28,163 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 21:23:15] 2025-10-13 01:22:28,163 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 21:23:15] 2025-10-13 01:22:28,163 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 21:23:15] 2025-10-13 01:22:28,163 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 21:23:15] 2025-10-13 01:22:28,163 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 21:23:15] 2025-10-13 01:22:28,163 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 21:23:15] 2025-10-13 01:22:28,163 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 21:23:15] 2025-10-13 01:22:28,164 | INFO     | job 6839927926 has completed (purged errors)
[2025-10-12 21:23:15] 2025-10-13 01:22:28,164 | INFO     | overall cleanup function is called
[2025-10-12 21:23:15] 2025-10-13 01:22:29,172 | INFO     | --- collectZombieJob: --- 10, [27201]
[2025-10-12 21:23:15] 2025-10-13 01:22:29,172 | INFO     | zombie collector waiting for pid 27201
[2025-10-12 21:23:15] 2025-10-13 01:22:29,173 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 21:23:15] 2025-10-13 01:22:29,173 | INFO     | collected zombie processes
[2025-10-12 21:23:15] 2025-10-13 01:22:29,173 | INFO     | will attempt to kill all subprocesses of pid=27201
[2025-10-12 21:23:15] 2025-10-13 01:22:29,292 | INFO     | process IDs to be killed: [27201] (in reverse order)
[2025-10-12 21:23:15] 2025-10-13 01:22:29,351 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 21:23:15] 2025-10-13 01:22:29,351 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 21:23:15] 2025-10-13 01:22:29,355 | INFO     | did not find any defunct processes belonging to 27201
[2025-10-12 21:23:15] 2025-10-13 01:22:29,359 | INFO     | did not find any defunct processes belonging to 27201
[2025-10-12 21:23:15] 2025-10-13 01:22:29,359 | INFO     | ready for new job
[2025-10-12 21:23:15] 2025-10-13 01:22:29,360 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 21:23:15] 2025-10-13 01:22:29,362 | INFO     | ***************************************
[2025-10-12 21:23:15] 2025-10-13 01:22:29,362 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 21:23:15] 2025-10-13 01:22:29,362 | INFO     | ***************************************
[2025-10-12 21:23:15] 2025-10-13 01:22:29,362 | INFO     | 
[2025-10-12 21:23:15] 2025-10-13 01:22:29,363 | INFO     | architecture information:
[2025-10-12 21:23:15] 2025-10-13 01:22:29,364 | INFO     | executing command: cat /etc/os-release
[2025-10-12 21:23:15] 2025-10-13 01:22:29,380 | INFO     | cat /etc/os-release:
[2025-10-12 21:23:15] NAME="CentOS Linux"
[2025-10-12 21:23:15] VERSION="7 (Core)"
[2025-10-12 21:23:15] ID="centos"
[2025-10-12 21:23:15] ID_LIKE="rhel fedora"
[2025-10-12 21:23:15] VERSION_ID="7"
[2025-10-12 21:23:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 21:23:15] ANSI_COLOR="0;31"
[2025-10-12 21:23:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 21:23:15] HOME_URL="https://www.centos.org/"
[2025-10-12 21:23:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 21:23:15] 
[2025-10-12 21:23:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 21:23:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 21:23:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 21:23:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 21:23:15] 
[2025-10-12 21:23:15] 2025-10-13 01:22:29,381 | INFO     | ***************************************
[2025-10-12 21:23:15] 2025-10-13 01:22:29,884 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-12 21:23:15] 2025-10-13 01:22:29,903 | INFO     | sufficient remaining disk space (32883343360 B)
[2025-10-12 21:23:15] 2025-10-13 01:22:29,903 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 21:23:15] 2025-10-13 01:22:29,904 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 21:23:15] 2025-10-13 01:22:29,904 | INFO     | update_server=False
[2025-10-12 21:23:15] 2025-10-13 01:22:29,904 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 21:23:15] 2025-10-13 01:22:29,904 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:23:15] 2025-10-13 01:22:29,904 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 21:23:15] 2025-10-13 01:22:30,105 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 21:23:15] 2025-10-13 01:22:30,105 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 21:23:15] 2025-10-13 01:22:30,105 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:23:15] 2025-10-13 01:22:30,106 | INFO     | will abort loop
[2025-10-12 21:23:15] 2025-10-13 01:22:30,160 | INFO     | all payload control threads have been joined
[2025-10-12 21:23:15] 2025-10-13 01:22:30,809 | INFO     | all data control threads have been joined
[2025-10-12 21:23:15] 2025-10-13 01:22:30,909 | INFO     | [job] retrieve thread has finished
[2025-10-12 21:23:15] 2025-10-13 01:22:30,910 | INFO     | [job] queue monitor thread has finished
[2025-10-12 21:23:15] 2025-10-13 01:22:30,928 | INFO     | [payload] validate_post thread has finished
[2025-10-12 21:23:15] 2025-10-13 01:22:31,111 | INFO     | [job] job monitor thread has finished
[2025-10-12 21:23:15] 2025-10-13 01:22:31,166 | INFO     | [payload] control thread has finished
[2025-10-12 21:23:15] 2025-10-13 01:22:31,166 | INFO     | [job] validate thread has finished
[2025-10-12 21:23:15] 2025-10-13 01:22:31,356 | INFO     | all job control threads have been joined
[2025-10-12 21:23:15] 2025-10-13 01:22:31,447 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 21:23:15] 2025-10-13 01:22:31,525 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 21:23:15] 2025-10-13 01:22:31,687 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 21:23:15] 2025-10-13 01:22:31,755 | INFO     | [data] copytool_in thread has finished
[2025-10-12 21:23:15] 2025-10-13 01:22:31,814 | INFO     | [data] control thread has finished
[2025-10-12 21:23:15] 2025-10-13 01:22:31,909 | INFO     | [data] copytool_out thread has finished
[2025-10-12 21:23:15] 2025-10-13 01:22:32,022 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 21:23:15] 2025-10-13 01:22:32,032 | INFO     | [payload] failed_post thread has finished
[2025-10-12 21:23:15] 2025-10-13 01:22:32,362 | INFO     | [job] control thread has finished
[2025-10-12 21:23:15] 2025-10-13 01:22:36,029 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 21:23:15] 2025-10-13 01:22:40,043 | INFO     | job.realtimelogging is not enabled
[2025-10-12 21:23:15] 2025-10-13 01:22:41,044 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 21:23:15] 2025-10-13 01:23:00,422 | INFO     | PID=20690 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 21:23:15] 2025-10-13 01:23:00,422 | INFO     | .. there are 2 such processes running
[2025-10-12 21:23:15] 2025-10-13 01:23:00,423 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 21:23:15] 2025-10-13 01:23:00,423 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 21:23:15] 2025-10-13 01:23:00,423 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 21:23:15] 2025-10-13 01:23:09,403 | INFO     | [monitor] cgroup control has ended
[2025-10-12 21:23:15] 2025-10-13 01:23:10,184 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140162785085248)>', '<ExcThread(monitor, started 140162348603136)>']
[2025-10-12 21:23:15] 2025-10-13 01:23:10,469 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 21:23:15] 2025-10-13 01:23:10,469 | INFO     | [monitor] control thread has ended
[2025-10-12 21:23:15] 2025-10-13 01:23:15,187 | INFO     | all workflow threads have been joined
[2025-10-12 21:23:15] 2025-10-13 01:23:15,187 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 21:23:15] 2025-10-13 01:23:15,187 | INFO     | traces error code: 0
[2025-10-12 21:23:15] 2025-10-13 01:23:15,188 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 21:23:15] 2025-10-13 01:23:15,296 [wrapper] ==== pilot stdout END ====
[2025-10-12 21:23:15] 2025-10-13 01:23:15,299 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 21:23:15] 2025-10-13 01:23:15,303 [wrapper] pilotpid: 20690
[2025-10-12 21:23:15] 2025-10-13 01:23:15,306 [wrapper] Pilot exit status: 0
[2025-10-12 21:23:15] 2025-10-13 01:23:15,317 [wrapper] pandaids: 6839927926
[2025-10-12 21:23:15] 2025-10-13 01:23:15,350 [wrapper] cleanup supervisor_pilot 13598 20691
[2025-10-12 21:23:15] 2025-10-13 01:23:15,353 [wrapper] Test setup, not cleaning
[2025-10-12 21:23:15] 2025-10-13 01:23:15,356 [wrapper] apfmon messages muted
[2025-10-12 21:23:15] 2025-10-13 01:23:15,359 [wrapper] ==== wrapper stdout END ====
[2025-10-12 21:23:15] 2025-10-13 01:23:15,362 [wrapper] ==== wrapper stderr END ====
[2025-10-12 21:23:15]  *** Error codes and diagnostics ***
[2025-10-12 21:23:15]     "exeErrorCode": 0,
[2025-10-12 21:23:15]     "exeErrorDiag": "",
[2025-10-12 21:23:15]     "pilotErrorCode": 0,
[2025-10-12 21:23:15]     "pilotErrorDiag": "",
[2025-10-12 21:23:15]  *** Listing of results directory ***
[2025-10-12 21:23:15] total 418888
[2025-10-12 21:23:15] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 07:54 pilot3.tar.gz
[2025-10-12 21:23:15] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 07:55 queuedata.json
[2025-10-12 21:23:15] -rwx------ 1 boincer umatlas     36292 Oct 12 07:56 runpilot2-wrapper.sh
[2025-10-12 21:23:15] -rw-r--r-- 1 boincer umatlas       100 Oct 12 20:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 21:23:15] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 20:12 run_atlas
[2025-10-12 21:23:15] -rw-r--r-- 1 boincer umatlas       105 Oct 12 20:12 job.xml
[2025-10-12 21:23:15] -rw-r--r-- 2 boincer umatlas 222646232 Oct 12 20:12 EVNT.46676267._003708.pool.root.1
[2025-10-12 21:23:15] drwxrwx--x 2 boincer umatlas      4096 Oct 12 20:12 shared
[2025-10-12 21:23:15] -rw-r--r-- 2 boincer umatlas    569677 Oct 12 20:12 input.tar.gz
[2025-10-12 21:23:15] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 20:12 start_atlas.sh
[2025-10-12 21:23:15] -rw-r--r-- 1 boincer umatlas         0 Oct 12 20:12 boinc_lockfile
[2025-10-12 21:23:15] -rw-r--r-- 1 boincer umatlas      2549 Oct 12 20:12 pandaJob.out
[2025-10-12 21:23:15] -rw------- 1 boincer umatlas    975603 Oct 12 20:13 agis_schedconf.cvmfs.json
[2025-10-12 21:23:15] -rw------- 1 boincer umatlas   1560580 Oct 12 20:13 agis_ddmendpoints.agis.ALL.json
[2025-10-12 21:23:15] drwx------ 5 boincer umatlas      4096 Oct 12 20:13 pilot3
[2025-10-12 21:23:15] -rw-r--r-- 1 boincer umatlas      6135 Oct 12 21:18 init_data.xml
[2025-10-12 21:23:15] -rw------- 1 boincer umatlas 200515570 Oct 12 21:21 HITS.46676269._077465.pool.root.1
[2025-10-12 21:23:15] -rw-r--r-- 1 boincer umatlas       529 Oct 12 21:22 boinc_task_state.xml
[2025-10-12 21:23:15] -rw------- 1 boincer umatlas      1044 Oct 12 21:22 memory_monitor_summary.json
[2025-10-12 21:23:15] -rw------- 1 boincer umatlas    318290 Oct 12 21:22 log.46676269._077465.job.log.tgz.1
[2025-10-12 21:23:15] -rw------- 1 boincer umatlas      7832 Oct 12 21:22 heartbeat.json
[2025-10-12 21:23:15] -rw------- 1 boincer umatlas        95 Oct 12 21:23 pilot_heartbeat.json
[2025-10-12 21:23:15] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 21:23 boinc_mmap_file
[2025-10-12 21:23:15] -rw-r--r-- 1 boincer umatlas        27 Oct 12 21:23 wrapper_checkpoint.txt
[2025-10-12 21:23:15] -rw------- 1 boincer umatlas      5079 Oct 12 21:23 pilotlog.txt
[2025-10-12 21:23:15] -rw------- 1 boincer umatlas    621726 Oct 12 21:23 log.46676269._077465.job.log.1
[2025-10-12 21:23:15] -rw------- 1 boincer umatlas       357 Oct 12 21:23 output.list
[2025-10-12 21:23:15] -rw-r--r-- 1 boincer umatlas       620 Oct 12 21:23 runtime_log
[2025-10-12 21:23:15] -rw------- 1 boincer umatlas    962560 Oct 12 21:23 result.tar.gz
[2025-10-12 21:23:15] -rw-r--r-- 1 boincer umatlas      8703 Oct 12 21:23 runtime_log.err
[2025-10-12 21:23:15] -rw------- 1 boincer umatlas       657 Oct 12 21:23 fRMMDm2r9R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm2gjNDmzHSBim.diag
[2025-10-12 21:23:15] -rw-r--r-- 1 boincer umatlas     21944 Oct 12 21:23 stderr.txt
[2025-10-12 21:23:15] HITS file was successfully produced:
[2025-10-12 21:23:15] -rw------- 1 boincer umatlas 200515570 Oct 12 21:21 shared/HITS.pool.root.1
[2025-10-12 21:23:15]  *** Contents of shared directory: ***
[2025-10-12 21:23:15] total 414764
[2025-10-12 21:23:15] -rw-r--r-- 2 boincer umatlas 222646232 Oct 12 20:12 ATLAS.root_0
[2025-10-12 21:23:15] -rw-r--r-- 2 boincer umatlas    569677 Oct 12 20:12 input.tar.gz
[2025-10-12 21:23:15] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 20:12 start_atlas.sh
[2025-10-12 21:23:15] -rw------- 1 boincer umatlas 200515570 Oct 12 21:21 HITS.pool.root.1
[2025-10-12 21:23:15] -rw------- 1 boincer umatlas    962560 Oct 12 21:23 result.tar.gz
21:23:17 (16913): run_atlas exited; CPU time 30795.681430
21:23:17 (16913): called boinc_finish(0)

</stderr_txt>
]]>

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