Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:11:57 (2858): wrapper (7.7.26015): starting
20:11:57 (2858): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 20:11:57] Arguments: --nthreads 12
[2025-10-12 20:11:57] Threads: 12
[2025-10-12 20:11:57] Checking for CVMFS
[2025-10-12 20:11:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 20:11:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 20:11:57] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 20:11:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 20:11:57] 2.11.2.0 2991 223539 101404 151641 2 57 15091563 20275200 1 130560 1 110048057 99.983 13478481 12487 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 20:11:57] CVMFS is ok
[2025-10-12 20:11:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 20:11:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 20:11:57] Further information can be found at the LHC@home message board.
[2025-10-12 20:11:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 20:11:57] Checking for apptainer binary...
[2025-10-12 20:11:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 20:11:57] Running /usr/bin/apptainer --version
[2025-10-12 20:11:57] apptainer version 1.3.2-1.el7
[2025-10-12 20:11:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 20:11:59] c-205-32.aglt2.org
[2025-10-12 20:11:59] apptainer works
[2025-10-12 20:11:59] Set ATHENA_PROC_NUMBER=12
[2025-10-12 20:11:59] Set ATHENA_CORE_NUMBER=12
[2025-10-12 20:11:59] Starting ATLAS job with PandaID=6840748878
[2025-10-12 20:11:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 21:30:27]  *** The last 200 lines of the pilot log: ***
[2025-10-12 21:30:27] ]
[2025-10-12 21:30:27] 2025-10-13 01:29:20,203 | INFO     | transferring file log.46676269._088444.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6840748878/log.46676269._088444.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 21:30:27] 2025-10-13 01:29:20,203 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6840748878/log.46676269._088444.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._088444.job
[2025-10-12 21:30:27] 2025-10-13 01:29:20,241 | INFO     | adding to output.list: log.46676269._088444.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/35/81/log.46676269._088444.job.log.tg
[2025-10-12 21:30:27] 2025-10-13 01:29:20,242 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 21:30:27] 2025-10-13 01:29:20,243 | INFO     | summary of transferred files:
[2025-10-12 21:30:27] 2025-10-13 01:29:20,243 | INFO     |  -- lfn=log.46676269._088444.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 21:30:27] 2025-10-13 01:29:20,243 | INFO     | stage-out finished correctly
[2025-10-12 21:30:27] 2025-10-13 01:29:20,387 | WARNING  | process 12958 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 21:30:27] 2025-10-13 01:29:20,387 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840748878/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 21:30:27] 2025-10-13 01:29:20,388 | INFO     | reaping zombies for max 20 seconds
[2025-10-12 21:30:27] 2025-10-13 01:29:20,399 | INFO     | checking for looping job (in state=finished)
[2025-10-12 21:30:27] 2025-10-13 01:29:20,400 | INFO     | using looping job limit: 7200 s
[2025-10-12 21:30:27] 2025-10-13 01:29:20,493 | INFO     | number of running child processes to parent process 12958: 1
[2025-10-12 21:30:27] 2025-10-13 01:29:20,493 | INFO     | maximum number of monitored processes: 6
[2025-10-12 21:30:27] 2025-10-13 01:29:21,228 | INFO     | time since job start (4628s) is within the limit (172800.0s)
[2025-10-12 21:30:27] 2025-10-13 01:29:22,912 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 21:30:27] 2025-10-13 01:29:22,997 | INFO     | monitor loop #344: job 0:6840748878 is in state 'finished'
[2025-10-12 21:30:27] 2025-10-13 01:29:22,997 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:30:27] 2025-10-13 01:29:23,233 | INFO     | time since job start (4630s) is within the limit (172800.0s)
[2025-10-12 21:30:27] 2025-10-13 01:29:24,622 | INFO     | job 6840748878 has state=finished
[2025-10-12 21:30:27] 2025-10-13 01:29:24,622 | INFO     | preparing for final server update for job 6840748878 in state='finished'
[2025-10-12 21:30:27] 2025-10-13 01:29:24,681 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-12 21:30:27] 2025-10-13 01:29:24,682 | INFO     | this job has now completed (state=finished)
[2025-10-12 21:30:27] 2025-10-13 01:29:24,682 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 21:30:27] 2025-10-13 01:29:24,682 | INFO     | log transfer has been attempted: DONE
[2025-10-12 21:30:27] 2025-10-13 01:29:24,682 | INFO     | job 6840748878 has finished - writing final server update
[2025-10-12 21:30:27] 2025-10-13 01:29:24,682 | INFO     | total number of processed events: 400 (read)
[2025-10-12 21:30:27] 2025-10-13 01:29:24,683 | INFO     | executing command: lscpu
[2025-10-12 21:30:27] 2025-10-13 01:29:24,709 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 21:30:27] 2025-10-13 01:29:25,239 | INFO     | time since job start (4632s) is within the limit (172800.0s)
[2025-10-12 21:30:27] 2025-10-13 01:29:25,500 | INFO     | monitor loop #345: job 0:6840748878 is in state 'finished'
[2025-10-12 21:30:27] 2025-10-13 01:29:25,500 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:30:27] 2025-10-13 01:29:27,245 | INFO     | time since job start (4634s) is within the limit (172800.0s)
[2025-10-12 21:30:27] 2025-10-13 01:29:28,003 | INFO     | monitor loop #346: job 0:6840748878 is in state 'finished'
[2025-10-12 21:30:27] 2025-10-13 01:29:28,003 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:30:27] 2025-10-13 01:29:29,250 | INFO     | time since job start (4636s) is within the limit (172800.0s)
[2025-10-12 21:30:27] 2025-10-13 01:29:29,539 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 21:30:27] 2025-10-13 01:29:29,543 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-10-12 21:30:27] 2025-10-13 01:29:29,546 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840748878/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 21:30:27] 2025-10-13 01:29:29,547 | INFO     | extracted standard info from prmon json
[2025-10-12 21:30:27] 2025-10-13 01:29:29,547 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 21:30:27] 2025-10-13 01:29:29,547 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 21:30:27] 2025-10-13 01:29:29,547 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 21:30:27] 2025-10-13 01:29:29,548 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 21:30:27] 2025-10-13 01:29:29,549 | INFO     | fitting pss+swap vs Time
[2025-10-12 21:30:27] 2025-10-13 01:29:29,549 | INFO     | sum of square deviations: 101843770.0
[2025-10-12 21:30:27] 2025-10-13 01:29:29,550 | INFO     | sum of deviations: 1903987571.0
[2025-10-12 21:30:27] 2025-10-13 01:29:29,550 | INFO     | mean x: 1760316741.0
[2025-10-12 21:30:27] 2025-10-13 01:29:29,550 | INFO     | mean y: 2672759.7101449277
[2025-10-12 21:30:27] 2025-10-13 01:29:29,550 | INFO     | -- intersect: -32906764861.140163
[2025-10-12 21:30:27] 2025-10-13 01:29:29,550 | INFO     | intersect: -32906764861.140163
[2025-10-12 21:30:27] 2025-10-13 01:29:29,550 | INFO     | chi2: 0.011037819361559799
[2025-10-12 21:30:27] 2025-10-13 01:29:29,550 | INFO     | -- intersect: -32906764861.140163
[2025-10-12 21:30:27] 2025-10-13 01:29:29,551 | INFO     | current memory leak: 18.70 B/s (using 69 data points, chi2=0.01)
[2025-10-12 21:30:27] 2025-10-13 01:29:29,551 | INFO     | could have reported an average CPU frequency of 2045 MHz (6 samples)
[2025-10-12 21:30:27] 2025-10-13 01:29:29,551 | INFO     | ..............................
[2025-10-12 21:30:27] 2025-10-13 01:29:29,551 | INFO     | . Timing measurements:
[2025-10-12 21:30:27] 2025-10-13 01:29:29,551 | INFO     | . get job = 0 s
[2025-10-12 21:30:27] 2025-10-13 01:29:29,551 | INFO     | . initial setup = 2 s
[2025-10-12 21:30:27] 2025-10-13 01:29:29,551 | INFO     | . payload setup = 6 s
[2025-10-12 21:30:27] 2025-10-13 01:29:29,552 | INFO     | . stage-in = 0 s
[2025-10-12 21:30:27] 2025-10-13 01:29:29,552 | INFO     | . payload execution = 4598 s
[2025-10-12 21:30:27] 2025-10-13 01:29:29,552 | INFO     | . stage-out = 0 s
[2025-10-12 21:30:27] 2025-10-13 01:29:29,552 | INFO     | . log creation = 0 s
[2025-10-12 21:30:27] 2025-10-13 01:29:29,552 | INFO     | ..............................
[2025-10-12 21:30:27] 2025-10-13 01:29:29,674 | INFO     | 
[2025-10-12 21:30:27] 2025-10-13 01:29:29,674 | INFO     | job summary report
[2025-10-12 21:30:27] 2025-10-13 01:29:29,674 | INFO     | --------------------------------------------------
[2025-10-12 21:30:27] 2025-10-13 01:29:29,675 | INFO     | PanDA job id: 6840748878
[2025-10-12 21:30:27] 2025-10-13 01:29:29,675 | INFO     | task id: 46676269
[2025-10-12 21:30:27] 2025-10-13 01:29:29,675 | INFO     | errors: (none)
[2025-10-12 21:30:27] 2025-10-13 01:29:29,675 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 21:30:27] 2025-10-13 01:29:29,675 | INFO     | pilot state: finished 
[2025-10-12 21:30:27] 2025-10-13 01:29:29,675 | INFO     | transexitcode: 0
[2025-10-12 21:30:27] 2025-10-13 01:29:29,675 | INFO     | exeerrorcode: 0
[2025-10-12 21:30:27] 2025-10-13 01:29:29,676 | INFO     | exeerrordiag: 
[2025-10-12 21:30:27] 2025-10-13 01:29:29,676 | INFO     | exitcode: 0
[2025-10-12 21:30:27] 2025-10-13 01:29:29,676 | INFO     | exitmsg: OK
[2025-10-12 21:30:27] 2025-10-13 01:29:29,676 | INFO     | cpuconsumptiontime: 49723 s
[2025-10-12 21:30:27] 2025-10-13 01:29:29,676 | INFO     | nevents: 400
[2025-10-12 21:30:27] 2025-10-13 01:29:29,676 | INFO     | neventsw: 0
[2025-10-12 21:30:27] 2025-10-13 01:29:29,677 | INFO     | pid: 12958
[2025-10-12 21:30:27] 2025-10-13 01:29:29,677 | INFO     | pgrp: 12958
[2025-10-12 21:30:27] 2025-10-13 01:29:29,677 | INFO     | corecount: 12
[2025-10-12 21:30:27] 2025-10-13 01:29:29,677 | INFO     | event service: False
[2025-10-12 21:30:27] 2025-10-13 01:29:29,677 | INFO     | sizes: {0: 2348856, 1: 2348856, 5: 2349146, 11: 2349202, 4608: 2375363, 4610: 2384361, 4613: 2384545, 4620: 2384739}
[2025-10-12 21:30:27] 2025-10-13 01:29:29,677 | INFO     | --------------------------------------------------
[2025-10-12 21:30:27] 2025-10-13 01:29:29,677 | INFO     | 
[2025-10-12 21:30:27] 2025-10-13 01:29:29,678 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 21:30:27] 2025-10-13 01:29:29,700 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 21:30:27] 2025-10-13 01:29:29,700 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 21:30:27] 2025-10-13 01:29:29,700 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 21:30:27] 2025-10-13 01:29:29,700 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 21:30:27] 2025-10-13 01:29:29,700 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 21:30:27] 2025-10-13 01:29:29,701 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 21:30:27] 2025-10-13 01:29:29,701 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 21:30:27] 2025-10-13 01:29:29,701 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 21:30:27] 2025-10-13 01:29:29,701 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 21:30:27] 2025-10-13 01:29:29,701 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 21:30:27] 2025-10-13 01:29:29,701 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 21:30:27] 2025-10-13 01:29:29,702 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 21:30:27] 2025-10-13 01:29:29,702 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 21:30:27] 2025-10-13 01:29:29,702 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 21:30:27] 2025-10-13 01:29:29,702 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 21:30:27] 2025-10-13 01:29:29,702 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 21:30:27] 2025-10-13 01:29:29,702 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 21:30:27] 2025-10-13 01:29:29,703 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 21:30:27] 2025-10-13 01:29:29,703 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 21:30:27] 2025-10-13 01:29:29,703 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 21:30:27] 2025-10-13 01:29:29,703 | INFO     | job 6840748878 has completed (purged errors)
[2025-10-12 21:30:27] 2025-10-13 01:29:29,703 | INFO     | overall cleanup function is called
[2025-10-12 21:30:27] 2025-10-13 01:29:30,712 | INFO     | --- collectZombieJob: --- 10, [12958]
[2025-10-12 21:30:27] 2025-10-13 01:29:30,712 | INFO     | zombie collector waiting for pid 12958
[2025-10-12 21:30:27] 2025-10-13 01:29:30,712 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 21:30:27] 2025-10-13 01:29:30,712 | INFO     | collected zombie processes
[2025-10-12 21:30:27] 2025-10-13 01:29:30,712 | INFO     | will attempt to kill all subprocesses of pid=12958
[2025-10-12 21:30:27] 2025-10-13 01:29:30,803 | INFO     | process IDs to be killed: [12958] (in reverse order)
[2025-10-12 21:30:27] 2025-10-13 01:29:30,852 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 21:30:27] 2025-10-13 01:29:30,852 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 21:30:27] 2025-10-13 01:29:30,856 | INFO     | did not find any defunct processes belonging to 12958
[2025-10-12 21:30:27] 2025-10-13 01:29:30,859 | INFO     | did not find any defunct processes belonging to 12958
[2025-10-12 21:30:27] 2025-10-13 01:29:30,859 | INFO     | ready for new job
[2025-10-12 21:30:27] 2025-10-13 01:29:30,859 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 21:30:27] 2025-10-13 01:29:30,860 | INFO     | ***************************************
[2025-10-12 21:30:27] 2025-10-13 01:29:30,860 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 21:30:27] 2025-10-13 01:29:30,860 | INFO     | ***************************************
[2025-10-12 21:30:27] 2025-10-13 01:29:30,861 | INFO     | 
[2025-10-12 21:30:27] 2025-10-13 01:29:30,861 | INFO     | architecture information:
[2025-10-12 21:30:27] 2025-10-13 01:29:30,862 | INFO     | executing command: cat /etc/os-release
[2025-10-12 21:30:27] 2025-10-13 01:29:30,875 | INFO     | cat /etc/os-release:
[2025-10-12 21:30:27] NAME="CentOS Linux"
[2025-10-12 21:30:27] VERSION="7 (Core)"
[2025-10-12 21:30:27] ID="centos"
[2025-10-12 21:30:27] ID_LIKE="rhel fedora"
[2025-10-12 21:30:27] VERSION_ID="7"
[2025-10-12 21:30:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 21:30:27] ANSI_COLOR="0;31"
[2025-10-12 21:30:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 21:30:27] HOME_URL="https://www.centos.org/"
[2025-10-12 21:30:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 21:30:27] 
[2025-10-12 21:30:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 21:30:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 21:30:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 21:30:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 21:30:27] 
[2025-10-12 21:30:27] 2025-10-13 01:29:30,876 | INFO     | ***************************************
[2025-10-12 21:30:27] 2025-10-13 01:29:31,379 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 21:30:27] 2025-10-13 01:29:31,395 | INFO     | sufficient remaining disk space (29355933696 B)
[2025-10-12 21:30:27] 2025-10-13 01:29:31,395 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 21:30:27] 2025-10-13 01:29:31,395 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 21:30:27] 2025-10-13 01:29:31,396 | INFO     | update_server=False
[2025-10-12 21:30:27] 2025-10-13 01:29:31,396 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 21:30:27] 2025-10-13 01:29:31,396 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 21:30:27] 2025-10-13 01:29:31,396 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:30:27] 2025-10-13 01:29:31,502 | INFO     | all data control threads have been joined
[2025-10-12 21:30:27] 2025-10-13 01:29:31,511 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:30:27] 2025-10-13 01:29:31,512 | INFO     | aborting loop
[2025-10-12 21:30:27] 2025-10-13 01:29:31,572 | INFO     | all job control threads have been joined
[2025-10-12 21:30:27] 2025-10-13 01:29:31,624 | INFO     | all payload control threads have been joined
[2025-10-12 21:30:27] 2025-10-13 01:29:32,401 | INFO     | [job] retrieve thread has finished
[2025-10-12 21:30:27] 2025-10-13 01:29:32,402 | INFO     | [job] queue monitor thread has finished
[2025-10-12 21:30:27] 2025-10-13 01:29:32,448 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 21:30:27] 2025-10-13 01:29:32,487 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 21:30:27] 2025-10-13 01:29:32,507 | INFO     | [data] control thread has finished
[2025-10-12 21:30:27] 2025-10-13 01:29:32,517 | INFO     | [job] job monitor thread has finished
[2025-10-12 21:30:27] 2025-10-13 01:29:32,577 | INFO     | [job] control thread has finished
[2025-10-12 21:30:27] 2025-10-13 01:29:32,630 | INFO     | [payload] control thread has finished
[2025-10-12 21:30:27] 2025-10-13 01:29:32,750 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 21:30:27] 2025-10-13 01:29:32,993 | INFO     | [data] copytool_in thread has finished
[2025-10-12 21:30:27] 2025-10-13 01:29:33,067 | INFO     | [payload] failed_post thread has finished
[2025-10-12 21:30:27] 2025-10-13 01:29:33,402 | INFO     | [data] copytool_out thread has finished
[2025-10-12 21:30:27] 2025-10-13 01:29:33,431 | INFO     | [job] validate thread has finished
[2025-10-12 21:30:27] 2025-10-13 01:29:33,509 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 21:30:27] 2025-10-13 01:29:33,619 | INFO     | [payload] validate_post thread has finished
[2025-10-12 21:30:27] 2025-10-13 01:29:33,895 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 21:30:27] 2025-10-13 01:29:37,515 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 21:30:27] 2025-10-13 01:30:02,453 | INFO     | PID=6604 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 21:30:27] 2025-10-13 01:30:02,453 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 21:30:27] 2025-10-13 01:30:02,454 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 21:30:27] 2025-10-13 01:30:02,454 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 21:30:27] 2025-10-13 01:30:20,549 | INFO     | [monitor] cgroup control has ended
[2025-10-12 21:30:27] 2025-10-13 01:30:22,368 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140442419451712)>', '<ExcThread(monitor, started 140441982846720)>']
[2025-10-12 21:30:27] 2025-10-13 01:30:22,556 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 21:30:27] 2025-10-13 01:30:22,556 | INFO     | [monitor] control thread has ended
[2025-10-12 21:30:27] 2025-10-13 01:30:27,394 | INFO     | all workflow threads have been joined
[2025-10-12 21:30:27] 2025-10-13 01:30:27,394 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 21:30:27] 2025-10-13 01:30:27,394 | INFO     | traces error code: 0
[2025-10-12 21:30:27] 2025-10-13 01:30:27,395 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 21:30:27] 2025-10-13 01:30:27,483 [wrapper] ==== pilot stdout END ====
[2025-10-12 21:30:27] 2025-10-13 01:30:27,487 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 21:30:27] 2025-10-13 01:30:27,491 [wrapper] pilotpid: 6604
[2025-10-12 21:30:27] 2025-10-13 01:30:27,495 [wrapper] Pilot exit status: 0
[2025-10-12 21:30:27] 2025-10-13 01:30:27,509 [wrapper] pandaids: 6840748878
[2025-10-12 21:30:27] 2025-10-13 01:30:27,551 [wrapper] cleanup supervisor_pilot 26175 6605
[2025-10-12 21:30:27] 2025-10-13 01:30:27,555 [wrapper] Test setup, not cleaning
[2025-10-12 21:30:27] 2025-10-13 01:30:27,559 [wrapper] apfmon messages muted
[2025-10-12 21:30:27] 2025-10-13 01:30:27,562 [wrapper] ==== wrapper stdout END ====
[2025-10-12 21:30:27] 2025-10-13 01:30:27,566 [wrapper] ==== wrapper stderr END ====
[2025-10-12 21:30:27]  *** Error codes and diagnostics ***
[2025-10-12 21:30:27]     "exeErrorCode": 0,
[2025-10-12 21:30:27]     "exeErrorDiag": "",
[2025-10-12 21:30:27]     "pilotErrorCode": 0,
[2025-10-12 21:30:27]     "pilotErrorDiag": "",
[2025-10-12 21:30:27]  *** Listing of results directory ***
[2025-10-12 21:30:27] total 420588
[2025-10-12 21:30:27] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 16:08 pilot3.tar.gz
[2025-10-12 21:30:27] -rwx------ 1 boincer umatlas     36292 Oct 12 16:19 runpilot2-wrapper.sh
[2025-10-12 21:30:27] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 16:19 queuedata.json
[2025-10-12 21:30:27] -rw-r--r-- 1 boincer umatlas       100 Oct 12 20:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 21:30:27] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 20:11 run_atlas
[2025-10-12 21:30:27] -rw-r--r-- 1 boincer umatlas       105 Oct 12 20:11 job.xml
[2025-10-12 21:30:27] -rw-r--r-- 2 boincer umatlas 221070664 Oct 12 20:11 EVNT.46676267._004490.pool.root.1
[2025-10-12 21:30:27] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 20:11 start_atlas.sh
[2025-10-12 21:30:27] drwxrwx--x 2 boincer umatlas      4096 Oct 12 20:11 shared
[2025-10-12 21:30:27] -rw-r--r-- 2 boincer umatlas    569676 Oct 12 20:11 input.tar.gz
[2025-10-12 21:30:27] -rw-r--r-- 1 boincer umatlas         0 Oct 12 20:11 boinc_lockfile
[2025-10-12 21:30:27] -rw-r--r-- 1 boincer umatlas      2549 Oct 12 20:11 pandaJob.out
[2025-10-12 21:30:27] -rw------- 1 boincer umatlas    975603 Oct 12 20:12 agis_schedconf.cvmfs.json
[2025-10-12 21:30:27] -rw------- 1 boincer umatlas   1560580 Oct 12 20:12 agis_ddmendpoints.agis.ALL.json
[2025-10-12 21:30:27] drwx------ 5 boincer umatlas      4096 Oct 12 20:12 pilot3
[2025-10-12 21:30:27] -rw------- 1 boincer umatlas 203602856 Oct 12 21:28 HITS.46676269._088444.pool.root.1
[2025-10-12 21:30:27] -rw-r--r-- 1 boincer umatlas       529 Oct 12 21:29 boinc_task_state.xml
[2025-10-12 21:30:27] -rw------- 1 boincer umatlas        95 Oct 12 21:29 pilot_heartbeat.json
[2025-10-12 21:30:27] -rw------- 1 boincer umatlas      1050 Oct 12 21:29 memory_monitor_summary.json
[2025-10-12 21:30:27] -rw------- 1 boincer umatlas    384671 Oct 12 21:29 log.46676269._088444.job.log.tgz.1
[2025-10-12 21:30:27] -rw------- 1 boincer umatlas      7852 Oct 12 21:29 heartbeat.json
[2025-10-12 21:30:27] -rw-r--r-- 1 boincer umatlas      5953 Oct 12 21:29 init_data.xml
[2025-10-12 21:30:27] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 21:30 boinc_mmap_file
[2025-10-12 21:30:27] -rw-r--r-- 1 boincer umatlas        27 Oct 12 21:30 wrapper_checkpoint.txt
[2025-10-12 21:30:27] -rw------- 1 boincer umatlas      4745 Oct 12 21:30 pilotlog.txt
[2025-10-12 21:30:27] -rw------- 1 boincer umatlas    670562 Oct 12 21:30 log.46676269._088444.job.log.1
[2025-10-12 21:30:27] -rw------- 1 boincer umatlas       357 Oct 12 21:30 output.list
[2025-10-12 21:30:27] -rw-r--r-- 1 boincer umatlas       620 Oct 12 21:30 runtime_log
[2025-10-12 21:30:27] -rw------- 1 boincer umatlas   1075200 Oct 12 21:30 result.tar.gz
[2025-10-12 21:30:27] -rw------- 1 boincer umatlas       659 Oct 12 21:30 y7XMDmoiHS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmsvUMDmJduMDo.diag
[2025-10-12 21:30:27] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 21:30 runtime_log.err
[2025-10-12 21:30:27] -rw-r--r-- 1 boincer umatlas     22310 Oct 12 21:30 stderr.txt
[2025-10-12 21:30:27] HITS file was successfully produced:
[2025-10-12 21:30:27] -rw------- 1 boincer umatlas 203602856 Oct 12 21:28 shared/HITS.pool.root.1
[2025-10-12 21:30:27]  *** Contents of shared directory: ***
[2025-10-12 21:30:27] total 416352
[2025-10-12 21:30:27] -rw-r--r-- 2 boincer umatlas 221070664 Oct 12 20:11 ATLAS.root_0
[2025-10-12 21:30:27] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 20:11 start_atlas.sh
[2025-10-12 21:30:27] -rw-r--r-- 2 boincer umatlas    569676 Oct 12 20:11 input.tar.gz
[2025-10-12 21:30:27] -rw------- 1 boincer umatlas 203602856 Oct 12 21:28 HITS.pool.root.1
[2025-10-12 21:30:27] -rw------- 1 boincer umatlas   1075200 Oct 12 21:30 result.tar.gz
21:30:29 (2858): run_atlas exited; CPU time 49700.368303
21:30:29 (2858): called boinc_finish(0)

</stderr_txt>
]]>

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