Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:11:53 (5950): wrapper (7.7.26015): starting
20:11:53 (5950): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 20:11:53] Arguments: --nthreads 12
[2025-10-12 20:11:53] Threads: 12
[2025-10-12 20:11:53] Checking for CVMFS
[2025-10-12 20:11:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 20:11:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 20:11:54] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 20:11:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 20:11:54] 2.11.2.0 2945 223585 98556 151641 0 57 16179532 20275201 1 130560 2 110461993 99.984 13441332 12790 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 20:11:54] CVMFS is ok
[2025-10-12 20:11:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 20:11:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 20:11:54] Further information can be found at the LHC@home message board.
[2025-10-12 20:11:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 20:11:54] Checking for apptainer binary...
[2025-10-12 20:11:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 20:11:54] Running /usr/bin/apptainer --version
[2025-10-12 20:11:54] apptainer version 1.3.2-1.el7
[2025-10-12 20:11:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 20:11:55] c-205-2.aglt2.org
[2025-10-12 20:11:55] apptainer works
[2025-10-12 20:11:55] Set ATHENA_PROC_NUMBER=12
[2025-10-12 20:11:55] Set ATHENA_CORE_NUMBER=12
[2025-10-12 20:11:55] Starting ATLAS job with PandaID=6840429428
[2025-10-12 20:11:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 21:27:24]  *** The last 200 lines of the pilot log: ***
[2025-10-12 21:27:24]  workdir=None
[2025-10-12 21:27:24] ]
[2025-10-12 21:27:24] 2025-10-13 01:26:07,162 | INFO     | time since job start (4436s) is within the limit (172800.0s)
[2025-10-12 21:27:24] 2025-10-13 01:26:07,185 | INFO     | transferring file log.46676269._084774.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6840429428/log.46676269._084774.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 21:27:24] 2025-10-13 01:26:07,185 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6840429428/log.46676269._084774.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._084774.job
[2025-10-12 21:27:24] 2025-10-13 01:26:07,208 | INFO     | adding to output.list: log.46676269._084774.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/24/7f/log.46676269._084774.job.log.tg
[2025-10-12 21:27:24] 2025-10-13 01:26:07,209 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 21:27:24] 2025-10-13 01:26:07,210 | INFO     | summary of transferred files:
[2025-10-12 21:27:24] 2025-10-13 01:26:07,210 | INFO     |  -- lfn=log.46676269._084774.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 21:27:24] 2025-10-13 01:26:07,210 | INFO     | stage-out finished correctly
[2025-10-12 21:27:24] 2025-10-13 01:26:07,295 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 21:27:24] 2025-10-13 01:26:07,756 | INFO     | monitor loop #330: job 0:6840429428 is in state 'finished'
[2025-10-12 21:27:24] 2025-10-13 01:26:07,756 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:27:24] 2025-10-13 01:26:08,277 | INFO     | PID=9678 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 21:27:24] 2025-10-13 01:26:09,278 | INFO     | time since job start (4438s) is within the limit (172800.0s)
[2025-10-12 21:27:24] 2025-10-13 01:26:09,757 | INFO     | job 6840429428 has state=finished
[2025-10-12 21:27:24] 2025-10-13 01:26:09,757 | INFO     | preparing for final server update for job 6840429428 in state='finished'
[2025-10-12 21:27:24] 2025-10-13 01:26:09,817 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-12 21:27:24] 2025-10-13 01:26:09,817 | INFO     | this job has now completed (state=finished)
[2025-10-12 21:27:24] 2025-10-13 01:26:09,818 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 21:27:24] 2025-10-13 01:26:09,818 | INFO     | log transfer has been attempted: DONE
[2025-10-12 21:27:24] 2025-10-13 01:26:09,818 | INFO     | job 6840429428 has finished - writing final server update
[2025-10-12 21:27:24] 2025-10-13 01:26:09,818 | INFO     | total number of processed events: 400 (read)
[2025-10-12 21:27:24] 2025-10-13 01:26:09,819 | INFO     | executing command: lscpu
[2025-10-12 21:27:24] 2025-10-13 01:26:09,845 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 21:27:24] 2025-10-13 01:26:10,259 | INFO     | monitor loop #331: job 0:6840429428 is in state 'finished'
[2025-10-12 21:27:24] 2025-10-13 01:26:10,259 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:27:24] 2025-10-13 01:26:11,283 | INFO     | time since job start (4440s) is within the limit (172800.0s)
[2025-10-12 21:27:24] 2025-10-13 01:26:12,767 | INFO     | monitor loop #332: job 0:6840429428 is in state 'finished'
[2025-10-12 21:27:24] 2025-10-13 01:26:12,767 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:27:24] 2025-10-13 01:26:13,289 | INFO     | time since job start (4442s) is within the limit (172800.0s)
[2025-10-12 21:27:24] 2025-10-13 01:26:15,270 | INFO     | monitor loop #333: job 0:6840429428 is in state 'finished'
[2025-10-12 21:27:24] 2025-10-13 01:26:15,270 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:27:24] 2025-10-13 01:26:15,295 | INFO     | time since job start (4444s) is within the limit (172800.0s)
[2025-10-12 21:27:24] 2025-10-13 01:26:15,829 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 21:27:24] 2025-10-13 01:26:15,833 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1673.5833333333333
[2025-10-12 21:27:24] 2025-10-13 01:26:15,836 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840429428/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 21:27:24] 2025-10-13 01:26:15,837 | INFO     | extracted standard info from prmon json
[2025-10-12 21:27:24] 2025-10-13 01:26:15,837 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 21:27:24] 2025-10-13 01:26:15,837 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 21:27:24] 2025-10-13 01:26:15,837 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 21:27:24] 2025-10-13 01:26:15,838 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 21:27:24] 2025-10-13 01:26:15,840 | INFO     | fitting pss+swap vs Time
[2025-10-12 21:27:24] 2025-10-13 01:26:15,840 | INFO     | sum of square deviations: 89127252.5
[2025-10-12 21:27:24] 2025-10-13 01:26:15,840 | INFO     | sum of deviations: -70789279.99999982
[2025-10-12 21:27:24] 2025-10-13 01:26:15,840 | INFO     | mean x: 1760316647.5
[2025-10-12 21:27:24] 2025-10-13 01:26:15,841 | INFO     | mean y: 2680461.8484848486
[2025-10-12 21:27:24] 2025-10-13 01:26:15,841 | INFO     | -- intersect: 1400811163.2132385
[2025-10-12 21:27:24] 2025-10-13 01:26:15,841 | INFO     | intersect: 1400811163.2132385
[2025-10-12 21:27:24] 2025-10-13 01:26:15,841 | INFO     | chi2: 0.021002807262660655
[2025-10-12 21:27:24] 2025-10-13 01:26:15,841 | INFO     | -- intersect: 1400811163.2132385
[2025-10-12 21:27:24] 2025-10-13 01:26:15,841 | INFO     | current memory leak: -0.79 B/s (using 66 data points, chi2=0.02)
[2025-10-12 21:27:24] 2025-10-13 01:26:15,842 | INFO     | could have reported an average CPU frequency of 2039 MHz (6 samples)
[2025-10-12 21:27:24] 2025-10-13 01:26:15,842 | INFO     | ..............................
[2025-10-12 21:27:24] 2025-10-13 01:26:15,842 | INFO     | . Timing measurements:
[2025-10-12 21:27:24] 2025-10-13 01:26:15,842 | INFO     | . get job = 0 s
[2025-10-12 21:27:24] 2025-10-13 01:26:15,842 | INFO     | . initial setup = 2 s
[2025-10-12 21:27:24] 2025-10-13 01:26:15,842 | INFO     | . payload setup = 7 s
[2025-10-12 21:27:24] 2025-10-13 01:26:15,842 | INFO     | . stage-in = 0 s
[2025-10-12 21:27:24] 2025-10-13 01:26:15,842 | INFO     | . payload execution = 4408 s
[2025-10-12 21:27:24] 2025-10-13 01:26:15,842 | INFO     | . stage-out = 0 s
[2025-10-12 21:27:24] 2025-10-13 01:26:15,843 | INFO     | . log creation = 0 s
[2025-10-12 21:27:24] 2025-10-13 01:26:15,843 | INFO     | ..............................
[2025-10-12 21:27:24] 2025-10-13 01:26:15,927 | INFO     | 
[2025-10-12 21:27:24] 2025-10-13 01:26:15,927 | INFO     | job summary report
[2025-10-12 21:27:24] 2025-10-13 01:26:15,927 | INFO     | --------------------------------------------------
[2025-10-12 21:27:24] 2025-10-13 01:26:15,927 | INFO     | PanDA job id: 6840429428
[2025-10-12 21:27:24] 2025-10-13 01:26:15,927 | INFO     | task id: 46676269
[2025-10-12 21:27:24] 2025-10-13 01:26:15,927 | INFO     | errors: (none)
[2025-10-12 21:27:24] 2025-10-13 01:26:15,928 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 21:27:24] 2025-10-13 01:26:15,928 | INFO     | pilot state: finished 
[2025-10-12 21:27:24] 2025-10-13 01:26:15,928 | INFO     | transexitcode: 0
[2025-10-12 21:27:24] 2025-10-13 01:26:15,928 | INFO     | exeerrorcode: 0
[2025-10-12 21:27:24] 2025-10-13 01:26:15,928 | INFO     | exeerrordiag: 
[2025-10-12 21:27:24] 2025-10-13 01:26:15,928 | INFO     | exitcode: 0
[2025-10-12 21:27:24] 2025-10-13 01:26:15,929 | INFO     | exitmsg: OK
[2025-10-12 21:27:24] 2025-10-13 01:26:15,929 | INFO     | cpuconsumptiontime: 46987 s
[2025-10-12 21:27:24] 2025-10-13 01:26:15,929 | INFO     | nevents: 400
[2025-10-12 21:27:24] 2025-10-13 01:26:15,929 | INFO     | neventsw: 0
[2025-10-12 21:27:24] 2025-10-13 01:26:15,929 | INFO     | pid: 16036
[2025-10-12 21:27:24] 2025-10-13 01:26:15,929 | INFO     | pgrp: 16036
[2025-10-12 21:27:24] 2025-10-13 01:26:15,929 | INFO     | corecount: 12
[2025-10-12 21:27:24] 2025-10-13 01:26:15,929 | INFO     | event service: False
[2025-10-12 21:27:24] 2025-10-13 01:26:15,929 | INFO     | sizes: {0: 2348684, 1: 2348883, 6: 2349145, 11: 2349173, 4419: 2375248, 4420: 2384430, 4429: 2384568}
[2025-10-12 21:27:24] 2025-10-13 01:26:15,930 | INFO     | --------------------------------------------------
[2025-10-12 21:27:24] 2025-10-13 01:26:15,930 | INFO     | 
[2025-10-12 21:27:24] 2025-10-13 01:26:15,930 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 21:27:24] 2025-10-13 01:26:15,953 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 21:27:24] 2025-10-13 01:26:15,953 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 21:27:24] 2025-10-13 01:26:15,953 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 21:27:24] 2025-10-13 01:26:15,954 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 21:27:24] 2025-10-13 01:26:15,954 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 21:27:24] 2025-10-13 01:26:15,954 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 21:27:24] 2025-10-13 01:26:15,954 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 21:27:24] 2025-10-13 01:26:15,954 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 21:27:24] 2025-10-13 01:26:15,954 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 21:27:24] 2025-10-13 01:26:15,955 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 21:27:24] 2025-10-13 01:26:15,955 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 21:27:24] 2025-10-13 01:26:15,955 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 21:27:24] 2025-10-13 01:26:15,955 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 21:27:24] 2025-10-13 01:26:15,955 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 21:27:24] 2025-10-13 01:26:15,956 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 21:27:24] 2025-10-13 01:26:15,956 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 21:27:24] 2025-10-13 01:26:15,956 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 21:27:24] 2025-10-13 01:26:15,956 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 21:27:24] 2025-10-13 01:26:15,956 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 21:27:24] 2025-10-13 01:26:15,956 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 21:27:24] 2025-10-13 01:26:15,957 | INFO     | job 6840429428 has completed (purged errors)
[2025-10-12 21:27:24] 2025-10-13 01:26:15,957 | INFO     | overall cleanup function is called
[2025-10-12 21:27:24] 2025-10-13 01:26:16,965 | INFO     | --- collectZombieJob: --- 10, [16036]
[2025-10-12 21:27:24] 2025-10-13 01:26:16,965 | INFO     | zombie collector waiting for pid 16036
[2025-10-12 21:27:24] 2025-10-13 01:26:16,965 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 21:27:24] 2025-10-13 01:26:16,965 | INFO     | collected zombie processes
[2025-10-12 21:27:24] 2025-10-13 01:26:16,966 | INFO     | will attempt to kill all subprocesses of pid=16036
[2025-10-12 21:27:24] 2025-10-13 01:26:17,054 | INFO     | process IDs to be killed: [16036] (in reverse order)
[2025-10-12 21:27:24] 2025-10-13 01:26:17,105 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 21:27:24] 2025-10-13 01:26:17,105 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 21:27:24] 2025-10-13 01:26:17,109 | INFO     | did not find any defunct processes belonging to 16036
[2025-10-12 21:27:24] 2025-10-13 01:26:17,111 | INFO     | did not find any defunct processes belonging to 16036
[2025-10-12 21:27:24] 2025-10-13 01:26:17,111 | INFO     | ready for new job
[2025-10-12 21:27:24] 2025-10-13 01:26:17,112 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 21:27:24] 2025-10-13 01:26:17,113 | INFO     | ***************************************
[2025-10-12 21:27:24] 2025-10-13 01:26:17,113 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 21:27:24] 2025-10-13 01:26:17,113 | INFO     | ***************************************
[2025-10-12 21:27:24] 2025-10-13 01:26:17,113 | INFO     | 
[2025-10-12 21:27:24] 2025-10-13 01:26:17,113 | INFO     | architecture information:
[2025-10-12 21:27:24] 2025-10-13 01:26:17,114 | INFO     | executing command: cat /etc/os-release
[2025-10-12 21:27:24] 2025-10-13 01:26:17,129 | INFO     | cat /etc/os-release:
[2025-10-12 21:27:24] NAME="CentOS Linux"
[2025-10-12 21:27:24] VERSION="7 (Core)"
[2025-10-12 21:27:24] ID="centos"
[2025-10-12 21:27:24] ID_LIKE="rhel fedora"
[2025-10-12 21:27:24] VERSION_ID="7"
[2025-10-12 21:27:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 21:27:24] ANSI_COLOR="0;31"
[2025-10-12 21:27:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 21:27:24] HOME_URL="https://www.centos.org/"
[2025-10-12 21:27:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 21:27:24] 
[2025-10-12 21:27:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 21:27:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 21:27:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 21:27:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 21:27:24] 
[2025-10-12 21:27:24] 2025-10-13 01:26:17,130 | INFO     | ***************************************
[2025-10-12 21:27:24] 2025-10-13 01:26:17,633 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 21:27:24] 2025-10-13 01:26:17,649 | INFO     | sufficient remaining disk space (29431431168 B)
[2025-10-12 21:27:24] 2025-10-13 01:26:17,649 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 21:27:24] 2025-10-13 01:26:17,650 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 21:27:24] 2025-10-13 01:26:17,650 | INFO     | update_server=False
[2025-10-12 21:27:24] 2025-10-13 01:26:17,650 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 21:27:24] 2025-10-13 01:26:17,650 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:27:24] 2025-10-13 01:26:17,683 | INFO     | all job control threads have been joined
[2025-10-12 21:27:24] 2025-10-13 01:26:17,780 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 21:27:24] 2025-10-13 01:26:17,780 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 21:27:24] 2025-10-13 01:26:17,780 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:27:24] 2025-10-13 01:26:17,781 | INFO     | will abort loop
[2025-10-12 21:27:24] 2025-10-13 01:26:17,809 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 21:27:24] 2025-10-13 01:26:17,885 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 21:27:24] 2025-10-13 01:26:18,121 | INFO     | all payload control threads have been joined
[2025-10-12 21:27:24] 2025-10-13 01:26:18,248 | INFO     | all data control threads have been joined
[2025-10-12 21:27:24] 2025-10-13 01:26:18,656 | INFO     | [job] retrieve thread has finished
[2025-10-12 21:27:24] 2025-10-13 01:26:18,656 | INFO     | [job] queue monitor thread has finished
[2025-10-12 21:27:24] 2025-10-13 01:26:18,688 | INFO     | [job] control thread has finished
[2025-10-12 21:27:24] 2025-10-13 01:26:18,786 | INFO     | [job] job monitor thread has finished
[2025-10-12 21:27:24] 2025-10-13 01:26:18,807 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 21:27:24] 2025-10-13 01:26:18,850 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 21:27:24] 2025-10-13 01:26:18,856 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 21:27:24] 2025-10-13 01:26:18,930 | INFO     | [payload] failed_post thread has finished
[2025-10-12 21:27:24] 2025-10-13 01:26:19,126 | INFO     | [payload] control thread has finished
[2025-10-12 21:27:24] 2025-10-13 01:26:19,177 | INFO     | [data] copytool_in thread has finished
[2025-10-12 21:27:24] 2025-10-13 01:26:19,194 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 21:27:24] 2025-10-13 01:26:19,253 | INFO     | [data] control thread has finished
[2025-10-12 21:27:24] 2025-10-13 01:26:19,689 | INFO     | [payload] validate_post thread has finished
[2025-10-12 21:27:24] 2025-10-13 01:26:19,815 | INFO     | [data] copytool_out thread has finished
[2025-10-12 21:27:24] 2025-10-13 01:26:19,868 | INFO     | [job] validate thread has finished
[2025-10-12 21:27:24] 2025-10-13 01:26:21,891 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 21:27:24] 2025-10-13 01:26:48,486 | INFO     | PID=9678 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 21:27:24] 2025-10-13 01:26:48,487 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 21:27:24] 2025-10-13 01:26:48,487 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 21:27:24] 2025-10-13 01:26:48,487 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 21:27:24] 2025-10-13 01:27:08,367 [wrapper] supervise_pilot (15 min periods counter: 6)
[2025-10-12 21:27:24] 2025-10-13 01:27:17,711 | INFO     | [monitor] cgroup control has ended
[2025-10-12 21:27:24] 2025-10-13 01:27:19,662 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140026679949120)>', '<ExcThread(monitor, started 140026235041536)>']
[2025-10-12 21:27:24] 2025-10-13 01:27:20,627 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 21:27:24] 2025-10-13 01:27:20,627 | INFO     | [monitor] control thread has ended
[2025-10-12 21:27:24] 2025-10-13 01:27:24,688 | INFO     | all workflow threads have been joined
[2025-10-12 21:27:24] 2025-10-13 01:27:24,688 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 21:27:24] 2025-10-13 01:27:24,688 | INFO     | traces error code: 0
[2025-10-12 21:27:24] 2025-10-13 01:27:24,688 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 21:27:24] 2025-10-13 01:27:24,777 [wrapper] ==== pilot stdout END ====
[2025-10-12 21:27:24] 2025-10-13 01:27:24,780 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 21:27:24] 2025-10-13 01:27:24,784 [wrapper] pilotpid: 9678
[2025-10-12 21:27:24] 2025-10-13 01:27:24,788 [wrapper] Pilot exit status: 0
[2025-10-12 21:27:24] 2025-10-13 01:27:24,805 [wrapper] pandaids: 6840429428
[2025-10-12 21:27:24] 2025-10-13 01:27:24,851 [wrapper] cleanup supervisor_pilot  8472 9679
[2025-10-12 21:27:24] 2025-10-13 01:27:24,855 [wrapper] Test setup, not cleaning
[2025-10-12 21:27:24] 2025-10-13 01:27:24,859 [wrapper] apfmon messages muted
[2025-10-12 21:27:24] 2025-10-13 01:27:24,862 [wrapper] ==== wrapper stdout END ====
[2025-10-12 21:27:24] 2025-10-13 01:27:24,866 [wrapper] ==== wrapper stderr END ====
[2025-10-12 21:27:24]  *** Error codes and diagnostics ***
[2025-10-12 21:27:24]     "exeErrorCode": 0,
[2025-10-12 21:27:24]     "exeErrorDiag": "",
[2025-10-12 21:27:24]     "pilotErrorCode": 0,
[2025-10-12 21:27:24]     "pilotErrorDiag": "",
[2025-10-12 21:27:24]  *** Listing of results directory ***
[2025-10-12 21:27:25] total 413404
[2025-10-12 21:27:25] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 13:17 pilot3.tar.gz
[2025-10-12 21:27:25] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 13:25 queuedata.json
[2025-10-12 21:27:25] -rwx------ 1 boincer umatlas     36292 Oct 12 13:26 runpilot2-wrapper.sh
[2025-10-12 21:27:25] -rw-r--r-- 1 boincer umatlas       100 Oct 12 20:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 21:27:25] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 20:11 run_atlas
[2025-10-12 21:27:25] -rw-r--r-- 1 boincer umatlas       105 Oct 12 20:11 job.xml
[2025-10-12 21:27:25] -rw-r--r-- 2 boincer umatlas 221419188 Oct 12 20:11 EVNT.46676267._004816.pool.root.1
[2025-10-12 21:27:25] -rw-r--r-- 2 boincer umatlas    569679 Oct 12 20:11 input.tar.gz
[2025-10-12 21:27:25] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 20:11 start_atlas.sh
[2025-10-12 21:27:25] drwxrwx--x 2 boincer umatlas      4096 Oct 12 20:11 shared
[2025-10-12 21:27:25] -rw-r--r-- 1 boincer umatlas         0 Oct 12 20:11 boinc_lockfile
[2025-10-12 21:27:25] -rw-r--r-- 1 boincer umatlas      2549 Oct 12 20:11 pandaJob.out
[2025-10-12 21:27:25] -rw------- 1 boincer umatlas    975603 Oct 12 20:12 agis_schedconf.cvmfs.json
[2025-10-12 21:27:25] -rw------- 1 boincer umatlas   1560580 Oct 12 20:12 agis_ddmendpoints.agis.ALL.json
[2025-10-12 21:27:25] drwx------ 5 boincer umatlas      4096 Oct 12 20:12 pilot3
[2025-10-12 21:27:25] -rw------- 1 boincer umatlas 195971699 Oct 12 21:25 HITS.46676269._084774.pool.root.1
[2025-10-12 21:27:25] -rw-r--r-- 1 boincer umatlas       530 Oct 12 21:25 boinc_task_state.xml
[2025-10-12 21:27:25] -rw------- 1 boincer umatlas      1050 Oct 12 21:26 memory_monitor_summary.json
[2025-10-12 21:27:25] -rw------- 1 boincer umatlas    370799 Oct 12 21:26 log.46676269._084774.job.log.tgz.1
[2025-10-12 21:27:25] -rw------- 1 boincer umatlas        95 Oct 12 21:26 pilot_heartbeat.json
[2025-10-12 21:27:25] -rw------- 1 boincer umatlas      7849 Oct 12 21:26 heartbeat.json
[2025-10-12 21:27:25] -rw-r--r-- 1 boincer umatlas      5951 Oct 12 21:27 init_data.xml
[2025-10-12 21:27:25] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 21:27 boinc_mmap_file
[2025-10-12 21:27:25] -rw-r--r-- 1 boincer umatlas        27 Oct 12 21:27 wrapper_checkpoint.txt
[2025-10-12 21:27:25] -rw------- 1 boincer umatlas      4931 Oct 12 21:27 pilotlog.txt
[2025-10-12 21:27:25] -rw------- 1 boincer umatlas    646079 Oct 12 21:27 log.46676269._084774.job.log.1
[2025-10-12 21:27:25] -rw------- 1 boincer umatlas       357 Oct 12 21:27 output.list
[2025-10-12 21:27:25] -rw-r--r-- 1 boincer umatlas       620 Oct 12 21:27 runtime_log
[2025-10-12 21:27:25] -rw------- 1 boincer umatlas   1034240 Oct 12 21:27 result.tar.gz
[2025-10-12 21:27:25] -rw-r--r-- 1 boincer umatlas      8700 Oct 12 21:27 runtime_log.err
[2025-10-12 21:27:25] -rw------- 1 boincer umatlas       658 Oct 12 21:27 iWgMDmN1ES8n9Rq4apOajLDm4fhM0noT9bVof3QYDmeVUMDmwhATtn.diag
[2025-10-12 21:27:25] -rw-r--r-- 1 boincer umatlas     22336 Oct 12 21:27 stderr.txt
[2025-10-12 21:27:25] HITS file was successfully produced:
[2025-10-12 21:27:25] -rw------- 1 boincer umatlas 195971699 Oct 12 21:25 shared/HITS.pool.root.1
[2025-10-12 21:27:25]  *** Contents of shared directory: ***
[2025-10-12 21:27:25] total 409204
[2025-10-12 21:27:25] -rw-r--r-- 2 boincer umatlas 221419188 Oct 12 20:11 ATLAS.root_0
[2025-10-12 21:27:25] -rw-r--r-- 2 boincer umatlas    569679 Oct 12 20:11 input.tar.gz
[2025-10-12 21:27:25] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 20:11 start_atlas.sh
[2025-10-12 21:27:25] -rw------- 1 boincer umatlas 195971699 Oct 12 21:25 HITS.pool.root.1
[2025-10-12 21:27:25] -rw------- 1 boincer umatlas   1034240 Oct 12 21:27 result.tar.gz
21:27:26 (5950): run_atlas exited; CPU time 46967.296265
21:27:26 (5950): called boinc_finish(0)

</stderr_txt>
]]>

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