Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:53:24 (3322866): wrapper (7.7.26015): starting
11:53:24 (3322866): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 11:53:24] Arguments: --nthreads 3
[2025-10-13 11:53:24] Threads: 3
[2025-10-13 11:53:24] Checking for CVMFS
[2025-10-13 11:53:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 11:53:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 11:53:24] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 11:53:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 11:53:25] 2.9.2.0 1670520 5421 82264 151656 2 57 30234260 36864001 0 130560 0 4332863 99.991 192212 814 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 11:53:25] CVMFS is ok
[2025-10-13 11:53:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 11:53:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 11:53:25] Further information can be found at the LHC@home message board.
[2025-10-13 11:53:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 11:53:25] Checking for apptainer binary...
[2025-10-13 11:53:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 11:53:25] Running /usr/bin/apptainer --version
[2025-10-13 11:53:25] apptainer version 1.4.1-1.1
[2025-10-13 11:53:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 11:53:25] magicA246
[2025-10-13 11:53:25] apptainer works
[2025-10-13 11:53:25] Set ATHENA_PROC_NUMBER=3
[2025-10-13 11:53:25] Set ATHENA_CORE_NUMBER=3
[2025-10-13 11:53:25] Starting ATLAS job with PandaID=6840715381
[2025-10-13 11:53:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 13:14:44]  *** The last 200 lines of the pilot log: ***
[2025-10-13 13:14:44] 2025-10-13 11:14:14,046 | INFO     | process IDs to be killed: [3333021] (in reverse order)
[2025-10-13 13:14:44] 2025-10-13 11:14:14,072 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 13:14:44] 2025-10-13 11:14:14,072 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 13:14:44] 2025-10-13 11:14:14,074 | INFO     | did not find any defunct processes belonging to 3333021
[2025-10-13 13:14:44] 2025-10-13 11:14:14,075 | INFO     | did not find any defunct processes belonging to 3333021
[2025-10-13 13:14:44] 2025-10-13 11:14:14,075 | INFO     | ready for new job
[2025-10-13 13:14:44] 2025-10-13 11:14:14,075 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 13:14:44] 2025-10-13 11:14:14,075 | INFO     | ***************************************
[2025-10-13 13:14:44] 2025-10-13 11:14:14,075 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 13:14:44] 2025-10-13 11:14:14,076 | INFO     | ***************************************
[2025-10-13 13:14:44] 2025-10-13 11:14:14,076 | INFO     | 
[2025-10-13 13:14:44] 2025-10-13 11:14:14,076 | INFO     | architecture information:
[2025-10-13 13:14:44] 2025-10-13 11:14:14,076 | INFO     | executing command: cat /etc/os-release
[2025-10-13 13:14:44] 2025-10-13 11:14:14,085 | INFO     | cat /etc/os-release:
[2025-10-13 13:14:44] NAME="CentOS Linux"
[2025-10-13 13:14:44] VERSION="7 (Core)"
[2025-10-13 13:14:44] ID="centos"
[2025-10-13 13:14:44] ID_LIKE="rhel fedora"
[2025-10-13 13:14:44] VERSION_ID="7"
[2025-10-13 13:14:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 13:14:44] ANSI_COLOR="0;31"
[2025-10-13 13:14:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 13:14:44] HOME_URL="https://www.centos.org/"
[2025-10-13 13:14:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 13:14:44] 
[2025-10-13 13:14:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 13:14:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 13:14:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 13:14:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 13:14:44] 
[2025-10-13 13:14:44] 2025-10-13 11:14:14,085 | INFO     | ***************************************
[2025-10-13 13:14:44] 2025-10-13 11:14:14,588 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 13:14:44] 2025-10-13 11:14:14,600 | INFO     | sufficient remaining disk space (374851239936 B)
[2025-10-13 13:14:44] 2025-10-13 11:14:14,600 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 13:14:44] 2025-10-13 11:14:14,600 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 13:14:44] 2025-10-13 11:14:14,600 | INFO     | update_server=False
[2025-10-13 13:14:44] 2025-10-13 11:14:14,600 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 13:14:44] 2025-10-13 11:14:14,600 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 13:14:44] 2025-10-13 11:14:14,601 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 13:14:44] 2025-10-13 11:14:14,601 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 13:14:44] 2025-10-13 11:14:14,601 | INFO     | aborting loop
[2025-10-13 13:14:44] 2025-10-13 11:14:15,352 | INFO     | all data control threads have been joined
[2025-10-13 13:14:44] 2025-10-13 11:14:15,457 | INFO     | all job control threads have been joined
[2025-10-13 13:14:44] 2025-10-13 11:14:15,481 | INFO     | all payload control threads have been joined
[2025-10-13 13:14:44] 2025-10-13 11:14:15,606 | INFO     | [job] retrieve thread has finished
[2025-10-13 13:14:44] 2025-10-13 11:14:15,606 | INFO     | [job] queue monitor thread has finished
[2025-10-13 13:14:44] 2025-10-13 11:14:15,607 | INFO     | [job] job monitor thread has finished
[2025-10-13 13:14:44] 2025-10-13 11:14:15,629 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 13:14:44] 2025-10-13 11:14:15,638 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 13:14:44] 2025-10-13 11:14:15,681 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 13:14:44] 2025-10-13 11:14:15,918 | INFO     | [payload] validate_post thread has finished
[2025-10-13 13:14:44] 2025-10-13 11:14:16,355 | INFO     | [data] control thread has finished
[2025-10-13 13:14:44] 2025-10-13 11:14:16,463 | INFO     | [job] control thread has finished
[2025-10-13 13:14:44] 2025-10-13 11:14:16,487 | INFO     | [payload] control thread has finished
[2025-10-13 13:14:44] 2025-10-13 11:14:16,607 | INFO     | [data] copytool_out thread has finished
[2025-10-13 13:14:44] 2025-10-13 11:14:16,689 | INFO     | [payload] failed_post thread has finished
[2025-10-13 13:14:44] 2025-10-13 11:14:16,694 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 13:14:44] 2025-10-13 11:14:16,812 | INFO     | [data] copytool_in thread has finished
[2025-10-13 13:14:44] 2025-10-13 11:14:17,011 | INFO     | [job] validate thread has finished
[2025-10-13 13:14:44] 2025-10-13 11:14:19,688 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 13:14:44] 2025-10-13 11:14:25,452 | INFO     | job.realtimelogging is not enabled
[2025-10-13 13:14:44] 2025-10-13 11:14:26,458 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 13:14:44] 2025-10-13 11:14:36,460 | INFO     | [monitor] cgroup control has ended
[2025-10-13 13:14:44] 2025-10-13 11:14:37,466 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140331290396480)>', '<ExcThread(monitor, started 140330187872000)>']
[2025-10-13 13:14:44] 2025-10-13 11:14:42,492 | INFO     | all workflow threads have been joined
[2025-10-13 13:14:44] 2025-10-13 11:14:42,492 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 13:14:44] 2025-10-13 11:14:42,492 | INFO     | traces error code: 0
[2025-10-13 13:14:44] 2025-10-13 11:14:42,492 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 13:14:44] 2025-10-13 11:14:44,824 | INFO     | PID=3326584 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 13:14:44] 2025-10-13 11:14:44,824 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 13:14:44] 2025-10-13 11:14:44,824 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 13:14:44] 2025-10-13 11:14:44,824 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 13:14:44] 2025-10-13 11:14:44,824 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 13:14:44] 2025-10-13 11:14:44,824 | INFO     | [monitor] control thread has ended
[2025-10-13 13:14:44] 2025-10-13 11:14:44,874 [wrapper] ==== pilot stdout END ====
[2025-10-13 13:14:44] 2025-10-13 11:14:44,877 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 13:14:44] 2025-10-13 11:14:44,879 [wrapper] pilotpid: 3326584
[2025-10-13 13:14:44] 2025-10-13 11:14:44,882 [wrapper] Pilot exit status: 0
[2025-10-13 13:14:44] 2025-10-13 11:14:44,889 [wrapper] pandaids: 6840715381
[2025-10-13 13:14:44] 2025-10-13 11:14:44,907 [wrapper] cleanup supervisor_pilot 3344917 3326585
[2025-10-13 13:14:44] 2025-10-13 11:14:44,909 [wrapper] Test setup, not cleaning
[2025-10-13 13:14:44] 2025-10-13 11:14:44,912 [wrapper] apfmon messages muted
[2025-10-13 13:14:44] 2025-10-13 11:14:44,914 [wrapper] ==== wrapper stdout END ====
[2025-10-13 13:14:44] 2025-10-13 11:14:44,916 [wrapper] ==== wrapper stderr END ====
[2025-10-13 13:14:44]  *** Error codes and diagnostics ***
[2025-10-13 13:14:44]     "exeErrorCode": 0,
[2025-10-13 13:14:44]     "exeErrorDiag": "",
[2025-10-13 13:14:44]     "pilotErrorCode": 0,
[2025-10-13 13:14:44]     "pilotErrorDiag": "",
[2025-10-13 13:14:44]  *** Listing of results directory ***
[2025-10-13 13:14:44] total 415332
[2025-10-13 13:14:44] -rw-r--r-- 1 boinc boinc    557409 Oct 12 22:08 pilot3.tar.gz
[2025-10-13 13:14:44] -rw-r--r-- 1 boinc boinc      5112 Oct 12 22:12 queuedata.json
[2025-10-13 13:14:44] -rwx------ 1 boinc boinc     36292 Oct 12 22:13 runpilot2-wrapper.sh
[2025-10-13 13:14:44] -rw-r--r-- 1 boinc boinc       100 Oct 13 11:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 13:14:44] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 11:53 run_atlas
[2025-10-13 13:14:44] -rw-r--r-- 1 boinc boinc       105 Oct 13 11:53 job.xml
[2025-10-13 13:14:44] -rw-r--r-- 2 boinc boinc 222560129 Oct 13 11:53 EVNT.46676267._004488.pool.root.1
[2025-10-13 13:14:44] -rw-r--r-- 2 boinc boinc    569676 Oct 13 11:53 input.tar.gz
[2025-10-13 13:14:44] -rw-r--r-- 2 boinc boinc     15120 Oct 13 11:53 start_atlas.sh
[2025-10-13 13:14:44] drwxrwx--x 2 boinc boinc      4096 Oct 13 11:53 shared
[2025-10-13 13:14:44] -rw-r--r-- 1 boinc boinc         0 Oct 13 11:53 boinc_setup_complete
[2025-10-13 13:14:44] -rw-r--r-- 1 boinc boinc      6448 Oct 13 11:53 init_data.xml
[2025-10-13 13:14:44] -rw-r--r-- 1 boinc boinc         0 Oct 13 11:53 boinc_lockfile
[2025-10-13 13:14:44] -rw-r--r-- 1 boinc boinc      2549 Oct 13 11:53 pandaJob.out
[2025-10-13 13:14:44] -rw------- 1 boinc boinc    972849 Oct 13 11:53 agis_schedconf.cvmfs.json
[2025-10-13 13:14:44] -rw------- 1 boinc boinc   1560580 Oct 13 11:53 agis_ddmendpoints.agis.ALL.json
[2025-10-13 13:14:44] drwx------ 5 boinc boinc      4096 Oct 13 11:53 pilot3
[2025-10-13 13:14:44] -rw------- 1 boinc boinc 196946691 Oct 13 13:13 HITS.46676269._088333.pool.root.1
[2025-10-13 13:14:44] -rw-r--r-- 1 boinc boinc       529 Oct 13 13:13 boinc_task_state.xml
[2025-10-13 13:14:44] -rw------- 1 boinc boinc        95 Oct 13 13:13 pilot_heartbeat.json
[2025-10-13 13:14:44] -rw------- 1 boinc boinc      1014 Oct 13 13:14 memory_monitor_summary.json
[2025-10-13 13:14:44] -rw------- 1 boinc boinc    239330 Oct 13 13:14 log.46676269._088333.job.log.tgz.1
[2025-10-13 13:14:44] -rw------- 1 boinc boinc      7749 Oct 13 13:14 heartbeat.json
[2025-10-13 13:14:44] -rw-r--r-- 1 boinc boinc      8192 Oct 13 13:14 boinc_mmap_file
[2025-10-13 13:14:44] -rw-r--r-- 1 boinc boinc        27 Oct 13 13:14 wrapper_checkpoint.txt
[2025-10-13 13:14:44] -rw------- 1 boinc boinc       747 Oct 13 13:14 pilotlog.txt
[2025-10-13 13:14:44] -rw------- 1 boinc boinc    712904 Oct 13 13:14 log.46676269._088333.job.log.1
[2025-10-13 13:14:44] -rw------- 1 boinc boinc       357 Oct 13 13:14 output.list
[2025-10-13 13:14:44] -rw-r--r-- 1 boinc boinc       620 Oct 13 13:14 runtime_log
[2025-10-13 13:14:44] -rw------- 1 boinc boinc    972800 Oct 13 13:14 result.tar.gz
[2025-10-13 13:14:44] -rw------- 1 boinc boinc       661 Oct 13 13:14 wE1NDmxcHS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm3OlNDmcvT95m.diag
[2025-10-13 13:14:44] -rw-r--r-- 1 boinc boinc      8792 Oct 13 13:14 runtime_log.err
[2025-10-13 13:14:44] -rw-r--r-- 1 boinc boinc     10180 Oct 13 13:14 stderr.txt
[2025-10-13 13:14:44] HITS file was successfully produced:
[2025-10-13 13:14:44] -rw------- 1 boinc boinc 196946691 Oct 13 13:13 shared/HITS.pool.root.1
[2025-10-13 13:14:44]  *** Contents of shared directory: ***
[2025-10-13 13:14:44] total 411212
[2025-10-13 13:14:44] -rw-r--r-- 2 boinc boinc 222560129 Oct 13 11:53 ATLAS.root_0
[2025-10-13 13:14:44] -rw-r--r-- 2 boinc boinc    569676 Oct 13 11:53 input.tar.gz
[2025-10-13 13:14:44] -rw-r--r-- 2 boinc boinc     15120 Oct 13 11:53 start_atlas.sh
[2025-10-13 13:14:44] -rw------- 1 boinc boinc 196946691 Oct 13 13:13 HITS.pool.root.1
[2025-10-13 13:14:44] -rw------- 1 boinc boinc    972800 Oct 13 13:14 result.tar.gz
13:14:46 (3322866): run_atlas exited; CPU time 13805.983498
13:14:46 (3322866): called boinc_finish(0)

</stderr_txt>
]]>

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