Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:08:44 (12500): wrapper (7.7.26015): starting
20:08:44 (12500): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 20:08:44] Arguments: --nthreads 8
[2025-10-12 20:08:44] Threads: 8
[2025-10-12 20:08:44] Checking for CVMFS
[2025-10-12 20:08:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 20:08:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 20:08:44] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 20:08:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 20:08:45] 2.11.2.0 8539 53615 133904 151641 2 57 11640691 18432000 1833 130560 0 50835180 99.975 2289825 37390 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 20:08:45] CVMFS is ok
[2025-10-12 20:08:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 20:08:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 20:08:45] Further information can be found at the LHC@home message board.
[2025-10-12 20:08:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 20:08:45] Checking for apptainer binary...
[2025-10-12 20:08:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 20:08:45] Running /usr/bin/apptainer --version
[2025-10-12 20:08:45] apptainer version 1.3.2-1.el7
[2025-10-12 20:08:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 20:08:45] c-206-1.aglt2.org
[2025-10-12 20:08:45] apptainer works
[2025-10-12 20:08:45] Set ATHENA_PROC_NUMBER=8
[2025-10-12 20:08:45] Set ATHENA_CORE_NUMBER=8
[2025-10-12 20:08:45] Starting ATLAS job with PandaID=6840537539
[2025-10-12 20:08:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 22:59:18]  *** The last 200 lines of the pilot log: ***
[2025-10-12 22:59:18] 2025-10-13 02:58:33,279 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 22:59:18] 2025-10-13 02:58:33,279 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 22:59:18] 2025-10-13 02:58:33,284 | INFO     | fitting pss+swap vs Time
[2025-10-12 22:59:18] 2025-10-13 02:58:33,285 | INFO     | sum of square deviations: 1444149868.0
[2025-10-12 22:59:18] 2025-10-13 02:58:33,286 | INFO     | sum of deviations: 16905908440.0
[2025-10-12 22:59:18] 2025-10-13 02:58:33,286 | INFO     | mean x: 1760319226.0
[2025-10-12 22:59:18] 2025-10-13 02:58:33,286 | INFO     | mean y: 2473508.7005988024
[2025-10-12 22:59:18] 2025-10-13 02:58:33,287 | INFO     | -- intersect: -20604664517.176136
[2025-10-12 22:59:18] 2025-10-13 02:58:33,287 | INFO     | intersect: -20604664517.176136
[2025-10-12 22:59:18] 2025-10-13 02:58:33,287 | INFO     | chi2: 2.1058386988181486
[2025-10-12 22:59:18] 2025-10-13 02:58:33,288 | INFO     | sum of square deviations: 1318277740.5
[2025-10-12 22:59:18] 2025-10-13 02:58:33,289 | INFO     | sum of deviations: 27270143391.0
[2025-10-12 22:59:18] 2025-10-13 02:58:33,289 | INFO     | mean x: 1760319073.5
[2025-10-12 22:59:18] 2025-10-13 02:58:33,289 | INFO     | mean y: 2485739.4320987654
[2025-10-12 22:59:18] 2025-10-13 02:58:33,290 | INFO     | -- intersect: -36411808512.43786
[2025-10-12 22:59:18] 2025-10-13 02:58:33,290 | INFO     | intersect: -36411808512.43786
[2025-10-12 22:59:18] 2025-10-13 02:58:33,290 | INFO     | chi2: 1.3307914230125122
[2025-10-12 22:59:18] 2025-10-13 02:58:33,290 | INFO     | current chi2=1.3307914230125122 (change=36.80468386494241 %)
[2025-10-12 22:59:18] 2025-10-13 02:58:33,291 | INFO     | sum of square deviations: 1199940638.0
[2025-10-12 22:59:18] 2025-10-13 02:58:33,292 | INFO     | sum of deviations: 26341376667.0
[2025-10-12 22:59:18] 2025-10-13 02:58:33,292 | INFO     | mean x: 1760318921.0
[2025-10-12 22:59:18] 2025-10-13 02:58:33,292 | INFO     | mean y: 2484542.1656050957
[2025-10-12 22:59:18] 2025-10-13 02:58:33,293 | INFO     | -- intersect: -38640446852.66896
[2025-10-12 22:59:18] 2025-10-13 02:58:33,293 | INFO     | intersect: -38640446852.66896
[2025-10-12 22:59:18] 2025-10-13 02:58:33,293 | INFO     | chi2: 1.3313462366878446
[2025-10-12 22:59:18] 2025-10-13 02:58:33,293 | INFO     | current chi2=1.3313462366878446 (change=-0.041690505795149845 %)
[2025-10-12 22:59:18] 2025-10-13 02:58:33,294 | INFO     | right removable region: 156
[2025-10-12 22:59:18] 2025-10-13 02:58:33,294 | INFO     | sum of square deviations: 1318277740.5
[2025-10-12 22:59:18] 2025-10-13 02:58:33,295 | INFO     | sum of deviations: -6029749075.5
[2025-10-12 22:59:18] 2025-10-13 02:58:33,295 | INFO     | mean x: 1760319378.5
[2025-10-12 22:59:18] 2025-10-13 02:58:33,296 | INFO     | mean y: 2500880.3024691357
[2025-10-12 22:59:18] 2025-10-13 02:58:33,296 | INFO     | -- intersect: 8054130532.388755
[2025-10-12 22:59:18] 2025-10-13 02:58:33,296 | INFO     | intersect: 8054130532.388755
[2025-10-12 22:59:18] 2025-10-13 02:58:33,296 | INFO     | chi2: 0.8171521037423404
[2025-10-12 22:59:18] 2025-10-13 02:58:33,297 | INFO     | current chi2=0.8171521037423404 (change=61.19588341685679 %)
[2025-10-12 22:59:18] 2025-10-13 02:58:33,297 | INFO     | sum of square deviations: 1199940638.0
[2025-10-12 22:59:18] 2025-10-13 02:58:33,298 | INFO     | sum of deviations: -4990491678.999999
[2025-10-12 22:59:18] 2025-10-13 02:58:33,298 | INFO     | mean x: 1760319531.0
[2025-10-12 22:59:18] 2025-10-13 02:58:33,299 | INFO     | mean y: 2499471.4777070065
[2025-10-12 22:59:18] 2025-10-13 02:58:33,299 | INFO     | -- intersect: 7323578276.241615
[2025-10-12 22:59:18] 2025-10-13 02:58:33,299 | INFO     | intersect: 7323578276.241615
[2025-10-12 22:59:18] 2025-10-13 02:58:33,299 | INFO     | chi2: 0.8000824720436691
[2025-10-12 22:59:18] 2025-10-13 02:58:33,300 | INFO     | current chi2=0.8000824720436691 (change=2.0889173044402463 %)
[2025-10-12 22:59:18] 2025-10-13 02:58:33,300 | INFO     | left removable region: 20
[2025-10-12 22:59:18] 2025-10-13 02:58:33,300 | INFO     | sum of square deviations: 779958810.0
[2025-10-12 22:59:18] 2025-10-13 02:58:33,301 | INFO     | sum of deviations: 3062186488.5
[2025-10-12 22:59:18] 2025-10-13 02:58:33,301 | INFO     | mean x: 1760319500.5
[2025-10-12 22:59:18] 2025-10-13 02:58:33,302 | INFO     | mean y: 2516307.786764706
[2025-10-12 22:59:18] 2025-10-13 02:58:33,302 | INFO     | -- intersect: -6908651975.41292
[2025-10-12 22:59:18] 2025-10-13 02:58:33,302 | INFO     | intersect: -6908651975.41292
[2025-10-12 22:59:18] 2025-10-13 02:58:33,302 | INFO     | chi2: 0.0011057171647941126
[2025-10-12 22:59:18] 2025-10-13 02:58:33,303 | INFO     | -- intersect: -6908651975.41292
[2025-10-12 22:59:18] 2025-10-13 02:58:33,303 | INFO     | current memory leak: 3.93 B/s (using 136 data points, chi2=0.00)
[2025-10-12 22:59:18] 2025-10-13 02:58:33,303 | INFO     | could have reported an average CPU frequency of 2517 MHz (9 samples)
[2025-10-12 22:59:18] 2025-10-13 02:58:33,303 | INFO     | ..............................
[2025-10-12 22:59:18] 2025-10-13 02:58:33,304 | INFO     | . Timing measurements:
[2025-10-12 22:59:18] 2025-10-13 02:58:33,304 | INFO     | . get job = 0 s
[2025-10-12 22:59:18] 2025-10-13 02:58:33,304 | INFO     | . initial setup = 2 s
[2025-10-12 22:59:18] 2025-10-13 02:58:33,304 | INFO     | . payload setup = 4 s
[2025-10-12 22:59:18] 2025-10-13 02:58:33,304 | INFO     | . stage-in = 0 s
[2025-10-12 22:59:18] 2025-10-13 02:58:33,305 | INFO     | . payload execution = 10141 s
[2025-10-12 22:59:18] 2025-10-13 02:58:33,305 | INFO     | . stage-out = 0 s
[2025-10-12 22:59:18] 2025-10-13 02:58:33,305 | INFO     | . log creation = 0 s
[2025-10-12 22:59:18] 2025-10-13 02:58:33,305 | INFO     | ..............................
[2025-10-12 22:59:18] 2025-10-13 02:58:33,448 | INFO     | 
[2025-10-12 22:59:18] 2025-10-13 02:58:33,448 | INFO     | job summary report
[2025-10-12 22:59:18] 2025-10-13 02:58:33,448 | INFO     | --------------------------------------------------
[2025-10-12 22:59:18] 2025-10-13 02:58:33,448 | INFO     | PanDA job id: 6840537539
[2025-10-12 22:59:18] 2025-10-13 02:58:33,448 | INFO     | task id: 46676269
[2025-10-12 22:59:18] 2025-10-13 02:58:33,449 | INFO     | errors: (none)
[2025-10-12 22:59:18] 2025-10-13 02:58:33,449 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 22:59:18] 2025-10-13 02:58:33,449 | INFO     | pilot state: finished 
[2025-10-12 22:59:18] 2025-10-13 02:58:33,449 | INFO     | transexitcode: 0
[2025-10-12 22:59:18] 2025-10-13 02:58:33,449 | INFO     | exeerrorcode: 0
[2025-10-12 22:59:18] 2025-10-13 02:58:33,449 | INFO     | exeerrordiag: 
[2025-10-12 22:59:18] 2025-10-13 02:58:33,450 | INFO     | exitcode: 0
[2025-10-12 22:59:18] 2025-10-13 02:58:33,450 | INFO     | exitmsg: OK
[2025-10-12 22:59:18] 2025-10-13 02:58:33,450 | INFO     | cpuconsumptiontime: 76255 s
[2025-10-12 22:59:18] 2025-10-13 02:58:33,450 | INFO     | nevents: 400
[2025-10-12 22:59:18] 2025-10-13 02:58:33,450 | INFO     | neventsw: 0
[2025-10-12 22:59:18] 2025-10-13 02:58:33,450 | INFO     | pid: 22793
[2025-10-12 22:59:18] 2025-10-13 02:58:33,451 | INFO     | pgrp: 22793
[2025-10-12 22:59:18] 2025-10-13 02:58:33,451 | INFO     | corecount: 8
[2025-10-12 22:59:18] 2025-10-13 02:58:33,451 | INFO     | event service: False
[2025-10-12 22:59:18] 2025-10-13 02:58:33,451 | INFO     | sizes: {0: 2348686, 1: 2348885, 4: 2349147, 12: 2349175, 10150: 2377864, 10151: 2386862, 10154: 2387074, 10160: 2387332}
[2025-10-12 22:59:18] 2025-10-13 02:58:33,451 | INFO     | --------------------------------------------------
[2025-10-12 22:59:18] 2025-10-13 02:58:33,451 | INFO     | 
[2025-10-12 22:59:18] 2025-10-13 02:58:33,452 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 22:59:18] 2025-10-13 02:58:33,474 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 22:59:18] 2025-10-13 02:58:33,474 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 22:59:18] 2025-10-13 02:58:33,474 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 22:59:18] 2025-10-13 02:58:33,475 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 22:59:18] 2025-10-13 02:58:33,475 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 22:59:18] 2025-10-13 02:58:33,475 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 22:59:18] 2025-10-13 02:58:33,475 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 22:59:18] 2025-10-13 02:58:33,475 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 22:59:18] 2025-10-13 02:58:33,475 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 22:59:18] 2025-10-13 02:58:33,476 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 22:59:18] 2025-10-13 02:58:33,476 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 22:59:18] 2025-10-13 02:58:33,476 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 22:59:18] 2025-10-13 02:58:33,476 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 22:59:18] 2025-10-13 02:58:33,476 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 22:59:18] 2025-10-13 02:58:33,476 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 22:59:18] 2025-10-13 02:58:33,477 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 22:59:18] 2025-10-13 02:58:33,477 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 22:59:18] 2025-10-13 02:58:33,477 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 22:59:18] 2025-10-13 02:58:33,477 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 22:59:18] 2025-10-13 02:58:33,478 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 22:59:18] 2025-10-13 02:58:33,478 | INFO     | job 6840537539 has completed (purged errors)
[2025-10-12 22:59:18] 2025-10-13 02:58:33,478 | INFO     | overall cleanup function is called
[2025-10-12 22:59:18] 2025-10-13 02:58:34,486 | INFO     | --- collectZombieJob: --- 10, [22793]
[2025-10-12 22:59:18] 2025-10-13 02:58:34,487 | INFO     | zombie collector waiting for pid 22793
[2025-10-12 22:59:18] 2025-10-13 02:58:34,487 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 22:59:18] 2025-10-13 02:58:34,487 | INFO     | collected zombie processes
[2025-10-12 22:59:18] 2025-10-13 02:58:34,487 | INFO     | will attempt to kill all subprocesses of pid=22793
[2025-10-12 22:59:18] 2025-10-13 02:58:34,645 | INFO     | process IDs to be killed: [22793] (in reverse order)
[2025-10-12 22:59:18] 2025-10-13 02:58:34,696 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 22:59:18] 2025-10-13 02:58:34,696 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 22:59:18] 2025-10-13 02:58:34,701 | INFO     | did not find any defunct processes belonging to 22793
[2025-10-12 22:59:18] 2025-10-13 02:58:34,705 | INFO     | did not find any defunct processes belonging to 22793
[2025-10-12 22:59:18] 2025-10-13 02:58:34,706 | INFO     | ready for new job
[2025-10-12 22:59:18] 2025-10-13 02:58:34,706 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 22:59:18] 2025-10-13 02:58:34,708 | INFO     | ***************************************
[2025-10-12 22:59:18] 2025-10-13 02:58:34,708 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 22:59:18] 2025-10-13 02:58:34,708 | INFO     | ***************************************
[2025-10-12 22:59:18] 2025-10-13 02:58:34,708 | INFO     | 
[2025-10-12 22:59:18] 2025-10-13 02:58:34,709 | INFO     | architecture information:
[2025-10-12 22:59:18] 2025-10-13 02:58:34,709 | INFO     | executing command: cat /etc/os-release
[2025-10-12 22:59:18] 2025-10-13 02:58:34,723 | INFO     | cat /etc/os-release:
[2025-10-12 22:59:18] NAME="CentOS Linux"
[2025-10-12 22:59:18] VERSION="7 (Core)"
[2025-10-12 22:59:18] ID="centos"
[2025-10-12 22:59:18] ID_LIKE="rhel fedora"
[2025-10-12 22:59:18] VERSION_ID="7"
[2025-10-12 22:59:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 22:59:18] ANSI_COLOR="0;31"
[2025-10-12 22:59:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 22:59:18] HOME_URL="https://www.centos.org/"
[2025-10-12 22:59:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 22:59:18] 
[2025-10-12 22:59:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 22:59:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 22:59:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 22:59:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 22:59:18] 
[2025-10-12 22:59:18] 2025-10-13 02:58:34,723 | INFO     | ***************************************
[2025-10-12 22:59:18] 2025-10-13 02:58:35,225 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 22:59:18] 2025-10-13 02:58:35,245 | INFO     | sufficient remaining disk space (28280094720 B)
[2025-10-12 22:59:18] 2025-10-13 02:58:35,245 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 22:59:18] 2025-10-13 02:58:35,245 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 22:59:18] 2025-10-13 02:58:35,245 | INFO     | update_server=False
[2025-10-12 22:59:18] 2025-10-13 02:58:35,246 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 22:59:18] 2025-10-13 02:58:35,246 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:59:18] 2025-10-13 02:58:35,367 | INFO     | all payload control threads have been joined
[2025-10-12 22:59:18] 2025-10-13 02:58:35,456 | INFO     | all job control threads have been joined
[2025-10-12 22:59:18] 2025-10-13 02:58:35,508 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 22:59:18] 2025-10-13 02:58:35,510 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:59:18] 2025-10-13 02:58:35,510 | INFO     | aborting loop
[2025-10-12 22:59:18] 2025-10-13 02:58:36,044 | INFO     | all data control threads have been joined
[2025-10-12 22:59:18] 2025-10-13 02:58:36,246 | INFO     | [job] retrieve thread has finished
[2025-10-12 22:59:18] 2025-10-13 02:58:36,251 | INFO     | [job] queue monitor thread has finished
[2025-10-12 22:59:18] 2025-10-13 02:58:36,372 | INFO     | [payload] control thread has finished
[2025-10-12 22:59:18] 2025-10-13 02:58:36,380 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 22:59:18] 2025-10-13 02:58:36,397 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 22:59:18] 2025-10-13 02:58:36,429 | INFO     | [data] copytool_in thread has finished
[2025-10-12 22:59:18] 2025-10-13 02:58:36,462 | INFO     | [job] control thread has finished
[2025-10-12 22:59:18] 2025-10-13 02:58:36,511 | INFO     | [job] job monitor thread has finished
[2025-10-12 22:59:18] 2025-10-13 02:58:36,605 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 22:59:18] 2025-10-13 02:58:37,048 | INFO     | [job] validate thread has finished
[2025-10-12 22:59:18] 2025-10-13 02:58:37,049 | INFO     | [data] control thread has finished
[2025-10-12 22:59:18] 2025-10-13 02:58:37,116 | INFO     | [payload] failed_post thread has finished
[2025-10-12 22:59:18] 2025-10-13 02:58:37,509 | INFO     | [data] copytool_out thread has finished
[2025-10-12 22:59:18] 2025-10-13 02:58:37,711 | INFO     | [payload] validate_post thread has finished
[2025-10-12 22:59:18] 2025-10-13 02:58:38,182 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 22:59:18] 2025-10-13 02:58:42,189 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 22:59:18] 2025-10-13 02:58:46,150 | INFO     | job.realtimelogging is not enabled
[2025-10-12 22:59:18] 2025-10-13 02:58:47,155 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 22:59:18] 2025-10-13 02:59:05,788 | INFO     | PID=16303 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 22:59:18] 2025-10-13 02:59:05,789 | INFO     | .. there are 3 such processes running
[2025-10-12 22:59:18] 2025-10-13 02:59:05,789 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 22:59:18] 2025-10-13 02:59:05,789 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 22:59:18] 2025-10-13 02:59:05,789 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 22:59:18] 2025-10-13 02:59:13,082 | INFO     | [monitor] cgroup control has ended
[2025-10-12 22:59:18] 2025-10-13 02:59:13,148 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140455206274880)>', '<ExcThread(monitor, started 140454548989696)>']
[2025-10-12 22:59:18] 2025-10-13 02:59:13,825 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 22:59:18] 2025-10-13 02:59:13,826 | INFO     | [monitor] control thread has ended
[2025-10-12 22:59:18] 2025-10-13 02:59:18,173 | INFO     | all workflow threads have been joined
[2025-10-12 22:59:18] 2025-10-13 02:59:18,179 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 22:59:18] 2025-10-13 02:59:18,179 | INFO     | traces error code: 0
[2025-10-12 22:59:18] 2025-10-13 02:59:18,180 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 22:59:18] 2025-10-13 02:59:18,297 [wrapper] ==== pilot stdout END ====
[2025-10-12 22:59:18] 2025-10-13 02:59:18,299 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 22:59:18] 2025-10-13 02:59:18,303 [wrapper] pilotpid: 16303
[2025-10-12 22:59:18] 2025-10-13 02:59:18,305 [wrapper] Pilot exit status: 0
[2025-10-12 22:59:18] 2025-10-13 02:59:18,315 [wrapper] pandaids: 6840537539
[2025-10-12 22:59:18] 2025-10-13 02:59:18,356 [wrapper] cleanup supervisor_pilot 26604 16304
[2025-10-12 22:59:18] 2025-10-13 02:59:18,359 [wrapper] Test setup, not cleaning
[2025-10-12 22:59:18] 2025-10-13 02:59:18,361 [wrapper] apfmon messages muted
[2025-10-12 22:59:18] 2025-10-13 02:59:18,363 [wrapper] ==== wrapper stdout END ====
[2025-10-12 22:59:18] 2025-10-13 02:59:18,366 [wrapper] ==== wrapper stderr END ====
[2025-10-12 22:59:18]  *** Error codes and diagnostics ***
[2025-10-12 22:59:18]     "exeErrorCode": 0,
[2025-10-12 22:59:18]     "exeErrorDiag": "",
[2025-10-12 22:59:18]     "pilotErrorCode": 0,
[2025-10-12 22:59:18]     "pilotErrorDiag": "",
[2025-10-12 22:59:18]  *** Listing of results directory ***
[2025-10-12 22:59:18] total 411036
[2025-10-12 22:59:18] -rwx------ 1 boincer umatlas     36292 Oct 12 14:53 runpilot2-wrapper.sh
[2025-10-12 22:59:18] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 14:53 queuedata.json
[2025-10-12 22:59:18] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 14:53 pilot3.tar.gz
[2025-10-12 22:59:18] -rw-r--r-- 1 boincer umatlas       100 Oct 12 20:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 22:59:18] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 20:08 run_atlas
[2025-10-12 22:59:18] -rw-r--r-- 1 boincer umatlas       105 Oct 12 20:08 job.xml
[2025-10-12 22:59:18] -rw-r--r-- 2 boincer umatlas 220369115 Oct 12 20:08 EVNT.46676267._004427.pool.root.1
[2025-10-12 22:59:18] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 20:08 start_atlas.sh
[2025-10-12 22:59:18] drwxrwx--x 2 boincer umatlas      4096 Oct 12 20:08 shared
[2025-10-12 22:59:18] -rw-r--r-- 2 boincer umatlas    569678 Oct 12 20:08 input.tar.gz
[2025-10-12 22:59:18] -rw-r--r-- 1 boincer umatlas         0 Oct 12 20:08 boinc_lockfile
[2025-10-12 22:59:18] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 20:08 pandaJob.out
[2025-10-12 22:59:18] -rw------- 1 boincer umatlas    975603 Oct 12 20:08 agis_schedconf.cvmfs.json
[2025-10-12 22:59:18] -rw------- 1 boincer umatlas   1560580 Oct 12 20:08 agis_ddmendpoints.agis.ALL.json
[2025-10-12 22:59:18] drwx------ 5 boincer umatlas      4096 Oct 12 20:08 pilot3
[2025-10-12 22:59:18] -rw------- 1 boincer umatlas 192942071 Oct 12 22:57 HITS.46676269._086686.pool.root.1
[2025-10-12 22:59:18] -rw-r--r-- 1 boincer umatlas       530 Oct 12 22:57 boinc_task_state.xml
[2025-10-12 22:59:18] -rw------- 1 boincer umatlas      1055 Oct 12 22:58 memory_monitor_summary.json
[2025-10-12 22:59:18] -rw------- 1 boincer umatlas        95 Oct 12 22:58 pilot_heartbeat.json
[2025-10-12 22:59:18] -rw------- 1 boincer umatlas    403536 Oct 12 22:58 log.46676269._086686.job.log.tgz.1
[2025-10-12 22:59:18] -rw------- 1 boincer umatlas      7857 Oct 12 22:58 heartbeat.json
[2025-10-12 22:59:18] -rw-r--r-- 1 boincer umatlas      5950 Oct 12 22:58 init_data.xml
[2025-10-12 22:59:18] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 22:59 boinc_mmap_file
[2025-10-12 22:59:18] -rw-r--r-- 1 boincer umatlas        28 Oct 12 22:59 wrapper_checkpoint.txt
[2025-10-12 22:59:18] -rw------- 1 boincer umatlas      4893 Oct 12 22:59 pilotlog.txt
[2025-10-12 22:59:18] -rw------- 1 boincer umatlas   1441462 Oct 12 22:59 log.46676269._086686.job.log.1
[2025-10-12 22:59:18] -rw------- 1 boincer umatlas       357 Oct 12 22:59 output.list
[2025-10-12 22:59:18] -rw-r--r-- 1 boincer umatlas       620 Oct 12 22:59 runtime_log
[2025-10-12 22:59:18] -rw------- 1 boincer umatlas   1863680 Oct 12 22:59 result.tar.gz
[2025-10-12 22:59:18] -rw-r--r-- 1 boincer umatlas      8699 Oct 12 22:59 runtime_log.err
[2025-10-12 22:59:18] -rw------- 1 boincer umatlas       661 Oct 12 22:59 qqdKDmyMGS8n9Rq4apOajLDm4fhM0noT9bVof3QYDm9iUMDmpefMYn.diag
[2025-10-12 22:59:18] -rw-r--r-- 1 boincer umatlas     20855 Oct 12 22:59 stderr.txt
[2025-10-12 22:59:18] HITS file was successfully produced:
[2025-10-12 22:59:18] -rw------- 1 boincer umatlas 192942071 Oct 12 22:57 shared/HITS.pool.root.1
[2025-10-12 22:59:18]  *** Contents of shared directory: ***
[2025-10-12 22:59:18] total 406028
[2025-10-12 22:59:18] -rw-r--r-- 2 boincer umatlas 220369115 Oct 12 20:08 ATLAS.root_0
[2025-10-12 22:59:18] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 20:08 start_atlas.sh
[2025-10-12 22:59:18] -rw-r--r-- 2 boincer umatlas    569678 Oct 12 20:08 input.tar.gz
[2025-10-12 22:59:18] -rw------- 1 boincer umatlas 192942071 Oct 12 22:57 HITS.pool.root.1
[2025-10-12 22:59:18] -rw------- 1 boincer umatlas   1863680 Oct 12 22:59 result.tar.gz
22:59:20 (12500): run_atlas exited; CPU time 76433.477883
22:59:20 (12500): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN